- Transcript BART1_0-u52598.013
- Transcript IDBART1_0-u52598.013
- Gene IDBART1_0-u52598
Barley RTD
Exon Structure of BART1_0-u52598.013
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 244648196 | 244648065 | + |
| chr7H | 2 | 244649011 | 244648303 | + |
| chr7H | 3 | 244649246 | 244649157 | + |
| chr7H | 4 | 244649454 | 244649354 | + |
| chr7H | 5 | 244649654 | 244649541 | + |
| chr7H | 6 | 244649826 | 244649745 | + |
| chr7H | 7 | 244649975 | 244649908 | + |
| chr7H | 8 | 244650141 | 244650076 | + |
| chr7H | 9 | 244650345 | 244650221 | + |
| chr7H | 10 | 244651074 | 244650741 | + |
| chr7H | 11 | 244651289 | 244651173 | + |
| chr7H | 12 | 244652881 | 244651667 | + |
| chr7H | 13 | 244653452 | 244653145 | + |
| chr7H | 14 | 244654243 | 244653589 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.935757 | 5.20088 | 4.8961 |
| morex | ETI | 2.75157 | 1.12822 | 0.352023 |
| morex | LEA | 8.7381 | 2.2837 | 1.97144 |
| morex | EPI | 0.118123 | 0.592573 | 0.771141 |
| morex | ROO | 0.274718 | 1.66603 | 0.037901 |
| morex | ROO2 | 1.16866 | 1.27851 | 0.133234 |
| morex | NOD | 4.53596 | 1.08463 | 0.162095 |
| morex | RAC | 4.37881 | 0.368374 | 0.175813 |
| morex | INF1 | 7.51083 | 5.12185 | 4.61035 |
| morex | INF2 | 15.6255 | 15.9545 | 13.0406 |
| morex | CAR5 | 11.6144 | 10.1405 | 13.01 |
| morex | CAR15 | 0.41841 | 0.745575 | 1.80965 |
| morex | LEM | 0.953503 | 1.56185 | 1.48919 |
| morex | LOD | 1.969 | 3.41574 | 1.70559 |
| morex | PAL | 2.49024 | 3.27398 | 3.13655 |
| morex | SEN | 0.124853 | 0.103251 | 0.202068 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g43400.2 | +1 | 0.0 | 1496 | 748/1022 (73%) | protein|kinesin motor domain containing protein, expressed |
| TAIR PP10 | AT5G66310 @ ARAPORT AT5G66310.1 @ TAIR |
+1 | 0.0 | 718 | 459/1092 (42%) | Symbols: | ATP binding microtubule motor family protein | chr5:26485786-26490304 REVERSE LENGTH=1063 |
| BRACH PP3 | Bradi3g42190.2.p | +1 | 0.0 | 1576 | 791/1016 (78%) | pacid=32814335 transcript=Bradi3g42190.2 locus=Bradi3g42190 ID=Bradi3g42190.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (4116 bp)
>BART1_0-u52598.013 4116 150831_barley_pseudomolecules TCCTATTCTTCTTCTCGGCACCAACAAGGAGGAGCAGAAGAGGAGAGGGGGCGACACAGT CTTGCCACTAGCTGCATTTCTCTCCTCTCGCATTGGTCGTCTTCTAGTTCCACCGTCCAC CAGGGTGCGCAGAAAAACAAAGTCTTGATACTCCACTGTCTCCCCCTCTATCCTCTCCTA CCCCCCATGTGAGGTGCGTAAACAAAATTGAAGAGAGTGGCCGGGAGCGTGGCGGGGACC ATGGTCCGTCCCTTCCTCTCGCGACAACAGCGCAAAACTCCAACCCAGCAAGCGGCGGCG GCCAAAGATAATCCGTAGCCGCGCAGGCAGCATTAGTACATGTGCGAGTAAGAGGGGGTG CGTCGGGCAGTGTCTAGTGGTACTAGTAGTTGCTGTTGTTACCTTGGGTCTGGGCAGGGT GGTCTCGCCGGATCGCCGTCCACGTCCGGAACCCGGCGACAGACACGGCGCTCTCGGGCA CAAGGACCTGCCACCAGCCGGCCGGCTTTGGATTCTTGCTTACAATGCTGCCTGTTCCCA GGGGAAGGGGGTGTTGGTCGGTGGTGACGGGTGCAGAGGAAGAGGGGCGATTTTGATACT GTTCTTGGGTGGAGGGGTGCAGGGCTGAGAAGGGCGATGGGGGCGGGGGAGGAGGATGCG GCGGCGGCATGGGAGAAGGTGGAGGCCAAGGAGGAGAGGATCATGGTGTCCGTGCGGGTG CGGCCCCTGAACGGCAGGGAGTCCGGCGACAGCTCCGACTGGGAGTGCATTAGCCCCACC ACCGTCATGTTCCGGAGTACCGTTCCTGACCGCGCCATGTTCCCCACCGCCTACACCTAT GACAGGGTGTTTGGCCCCAATTGCTCTACCAGACAGGTCTACGAGGAAGGAGCAAAAGAA GTTGCTCTATCAGTTGTCAGTGGAATCAACTCAAGCATATTTGCGTATGGGCAAACAAGC AGCGGAAAGACTTACACAATGACTGGAATTACTGAGTACAGTGTGATGGACATTTATGAC TACATAGAGAAGCACCCTGAAAGAGAATTCATGCTGAAATTCTCAGCAATAGAGATATAT AATGAAGCTGTGAGGGATCTTCTGAGCCATGATACGACACCTCTTAGACTGCTTGACGAT CCTGAGAAAGGGACTACTGTTGAAAAGCTTACCGAGGAAACATTGAGGGACAAGGACCAT CTTAGGGATCTTCTTGGAATGTGTGAAGCTCAAAGAGAGATTGGAGAAACGGCTTTGAAC GAAGCGAGTTCTAGGTCCCACCAAATACTCAGGCTGACAATCGAAAGTTCTGTTAAGCAG TATTTAGGAAGAAGCAAATCGAGCACCCTGGTGTCTTGTGTGAACTTTGTTGACCTAGCT GGAAGTGAGCGAGCATCTCAGACTGCTTCAGCTGGTATGAGGTTAAAAGAAGGTAGTCAT ATTAATCGAAGTCTGCTAACACTGGGAAAGGTTGTTCGCCAACTCAGCAAGGGAAGAAAT GGTCATATCCCTTATAGAGATTCAAAGCTGACACGCATATTACAGTCCTCTTTGGGAGGC AATGCAAGAACAGCCATTGTCTGCACAATGAGCCCTGCACACACTCATATTGAGCAATCC AGGAACACACTTCTGTTTGCGACTTGCGCAAAGGAGGTAGTTACAAATGCACAGGTCAAT GTAGTGATGTCTGACAAAGCACTACTGAAGCATCTACAGAGAGAGCTCGCAAGATTAGAA AATGAACTGAAATTGCCGGAGTCAGCCTCCTGCACTAGTCATGCTGAAGCTTTAAGAGAG AAGGATGCACAGATTAAAAAGCTGGAAAAACAGCTTAGGGAATTGATAGAAGAAAAGGAC ACCGTTCAGTCTCAACTTAACTGTTTACTGAGAAGTGATGGTGACGACCATGACAATGAT CGTGCTGCAAAGCGATGGGATGTCCATAGTCGGTCCTCAGAGTCTCTTGCACGAAATGCA TCGGAGGAAGCACTTTCGGTTTCAGACACTTATGGAGGTTCTTATCAAGATCAAGGTCAC GCAGTGTTTGATGGATCATATGTCTTCAGTGCTGATCATGATGGCTTGTCATCCCCCAAT AAACCAATGGATCTTCCTCAGCAAACAAGGGTTCGGCAGCCAGTTTCACCTTGGCACCCT ACTAGCAACTATAGCTCTGATGGTGCGGAGTCATATAACATAAAGGAGGTAGCTTTCAGA ACTGCATCTGAGGTATCCGAAGAACATTGTAGGGAAGTGCAATGTATAGAGATACATGAG CATAGAAGAAGCACAAGCCAGGAATTTAACGTATTACTCCATGAGGGCACTAAGCTCCAC ATACCTGAAGTAGAGGACATCTCTAGAGACGCAGTCCCGCAACCTGATGAAGTGCTAGAA GCAGGGAGCATAACAGAAAAAATGGAAGATCATATGAAGATATACGCTAGCAAAGAGGAG CAGCAGGCCGAGATCATAGCAAATGCAGTAGAAGATCCTATTGAAGTGCATCAATGTGAA TCTGATGACTTTGCACACAACTTTGTCAAACTGTACCCATGTGATTCTAACATTTCTCTG GACGTTGGCAAACCTTACCCTCATGAATGTCTTACTGTAAAGAGGTGTATAACGAGCTCC AAGGATAGTGCATTGGCTAGAAGTCAAAGCTGCAGGGCTAGCTTCATGATCATTCCAAAT AGTTGGTTTGATGATTCGGAAAACACCAGGCAGACACCACCTGATGAAATCTTCAGGTAT CCTCCCAGAAGGCCTGATAAAGTCAGGAGAAGTCTGTACCAAGGAAATGATGATTGCCAA AACAATAACACTTCAGTAGACCTCTCTGCTGATTCTGGAGAAGTAGTTTGTGATGAAGTA GTTAAGGACACAGGTACCAGTGATGCAGTCAAGGACATGAGCACCAGTGCTGAAGTAGTC AAGGACATGAGTACCAATGATGAAGTAGTTAAGGCCATGAGCACCAGTGATGAAGTAGTC AAGGACATGAGCACCAGTGATGAAGTAGGCAAGGAGTCGAGTACCAGTGAAGCAGAACAA GAAGTTTGTATGGGTGACATCAGTTGTGTCACAGAGCTGGAACAGAAGACAGCAAAACAC CATGAGGACCAACCCGAGGAACATGAGGCAGAGCAGACTGTTAGAGATGAGTGTACAGCA GTTAAAACTGTCAAAGATGTTGGCATAGACGCAGTCCCGAGTACCGCCGAGTCTCCTTCG TGCTGGCCTATTGATTTTGCAAATAGGCAGCGGGAGATCATCGAGTTGTGGCACGACTGC AACGTGTCCCTAGTACACAGGACCTACTTCTTCCTCCTCTTCAAGGGAGATGCTGCAGAT AGCGTCTACATGGAAGTGGAGCACAGGAGACTGTCCTTCATCCTCAGCTCGTTCAGCACC AACTCCGCAGGAGGCGAGCTTAACTCCGCAATCGCGTCCAGCTTGAAGAATCTGAAACGT GAGAGGGACATGTTCTACAAGCAGATGCTCAAGAAGCTCGCCAACGGGGACAAGGAGGGC ATCTACACCAGATGGGGGATCGATCTGGGCTCCAAACAGCGGCGGCTTCAGCTATCTCGC CTCGTATGGACGCGGGCTGACATGGAGCATGTCCGGGAGAGCGCCTCGCTGGTGGCGAGG CTGATCGACCTGGTTGAGCCAGGGCAGGCTCTCAAGGAGATGTTCAGCCTCAACTTCACA CTGGCTCCCAGAACCGAACGGCGGTCTTTCAGCCTGCTACTAGGCGCGTGATCTTTGACG TACGAAGGTAGAAGGGTTTGATTTACCTAGTAAGTACAAGGAGGTTGACTTAACAGGAGA AGAGGACTATGCTGCGTATCATCGATTGGTTTCACGCATGTGTCTCTGCCTTGTTTTTGC TCGTTGTGTGCGTTTGAAAGAATTGTGTGCGCGTGCGTGTGTGATATTTCTGTGTGCAGT CTCACAAAAGTGAATCAATCAGACAGTACAGCTCTCCCTACCTTGCGTCGTATGTTCGTT TGTAAGAGTTTGTTCGTCAACCAAAATTTTGGAAGCCATGCGTGGGAGCATCGCACCATC CGGAATTTCCTATTTGCCCCACTTTGCATGGGCCGG
Protein Sequence (1044 aa)
>BART1_0-u52598.013 1044 150831_barley_pseudomolecules MGAGEEDAAAAWEKVEAKEERIMVSVRVRPLNGRESGDSSDWECISPTTVMFRSTVPDRA MFPTAYTYDRVFGPNCSTRQVYEEGAKEVALSVVSGINSSIFAYGQTSSGKTYTMTGITE YSVMDIYDYIEKHPEREFMLKFSAIEIYNEAVRDLLSHDTTPLRLLDDPEKGTTVEKLTE ETLRDKDHLRDLLGMCEAQREIGETALNEASSRSHQILRLTIESSVKQYLGRSKSSTLVS CVNFVDLAGSERASQTASAGMRLKEGSHINRSLLTLGKVVRQLSKGRNGHIPYRDSKLTR ILQSSLGGNARTAIVCTMSPAHTHIEQSRNTLLFATCAKEVVTNAQVNVVMSDKALLKHL QRELARLENELKLPESASCTSHAEALREKDAQIKKLEKQLRELIEEKDTVQSQLNCLLRS DGDDHDNDRAAKRWDVHSRSSESLARNASEEALSVSDTYGGSYQDQGHAVFDGSYVFSAD HDGLSSPNKPMDLPQQTRVRQPVSPWHPTSNYSSDGAESYNIKEVAFRTASEVSEEHCRE VQCIEIHEHRRSTSQEFNVLLHEGTKLHIPEVEDISRDAVPQPDEVLEAGSITEKMEDHM KIYASKEEQQAEIIANAVEDPIEVHQCESDDFAHNFVKLYPCDSNISLDVGKPYPHECLT VKRCITSSKDSALARSQSCRASFMIIPNSWFDDSENTRQTPPDEIFRYPPRRPDKVRRSL YQGNDDCQNNNTSVDLSADSGEVVCDEVVKDTGTSDAVKDMSTSAEVVKDMSTNDEVVKA MSTSDEVVKDMSTSDEVGKESSTSEAEQEVCMGDISCVTELEQKTAKHHEDQPEEHEAEQ TVRDECTAVKTVKDVGIDAVPSTAESPSCWPIDFANRQREIIELWHDCNVSLVHRTYFFL LFKGDAADSVYMEVEHRRLSFILSSFSTNSAGGELNSAIASSLKNLKRERDMFYKQMLKK LANGDKEGIYTRWGIDLGSKQRRLQLSRLVWTRADMEHVRESASLVARLIDLVEPGQALK EMFSLNFTLAPRTERRSFSLLLGA