- Transcript BART1_0-u52598.012
- Transcript IDBART1_0-u52598.012
- Gene IDBART1_0-u52598
Barley RTD
Exon Structure of BART1_0-u52598.012
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 244648196 | 244648025 | + |
| chr7H | 2 | 244649246 | 244649157 | + |
| chr7H | 3 | 244649454 | 244649354 | + |
| chr7H | 4 | 244649654 | 244649541 | + |
| chr7H | 5 | 244649826 | 244649745 | + |
| chr7H | 6 | 244649975 | 244649908 | + |
| chr7H | 7 | 244650141 | 244650076 | + |
| chr7H | 8 | 244650345 | 244650221 | + |
| chr7H | 9 | 244651074 | 244650741 | + |
| chr7H | 10 | 244651289 | 244651173 | + |
| chr7H | 11 | 244652881 | 244651667 | + |
| chr7H | 12 | 244653452 | 244653145 | + |
| chr7H | 13 | 244654235 | 244653589 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 1.93409 | 0 | 0.000000120224 |
| morex | ETI | 9.19557 | 1.75865 | 2.54729 |
| morex | LEA | 0 | 0 | 0 |
| morex | EPI | 0.566627 | 0.407719 | 0.141711 |
| morex | ROO | 0.486791 | 0 | 0 |
| morex | ROO2 | 2.38337 | 4.22822 | 3.01062 |
| morex | NOD | 1.81837 | 7.95043 | 3.22016 |
| morex | RAC | 15.1309 | 16.9199 | 14.1969 |
| morex | INF1 | 0.000186365 | 0 | 0.00014842 |
| morex | INF2 | 0 | 0 | 0.5324 |
| morex | CAR5 | 0 | 0 | 0 |
| morex | CAR15 | 0 | 0 | 0 |
| morex | LEM | 13.6318 | 7.46564 | 11.9355 |
| morex | LOD | 9.27176 | 5.00516 | 6.77836 |
| morex | PAL | 18.0887 | 15.1982 | 20.5645 |
| morex | SEN | 0.391523 | 0.149027 | 0.0447041 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g43400.2 | +1 | 0.0 | 1397 | 704/974 (72%) | protein|kinesin motor domain containing protein, expressed |
| TAIR PP10 | AT5G66310 @ ARAPORT AT5G66310.1 @ TAIR |
+1 | 0.0 | 664 | 433/1040 (42%) | Symbols: | ATP binding microtubule motor family protein | chr5:26485786-26490304 REVERSE LENGTH=1063 |
| BRACH PP3 | Bradi3g42190.2.p | +1 | 0.0 | 1499 | 753/968 (78%) | pacid=32814335 transcript=Bradi3g42190.2 locus=Bradi3g42190 ID=Bradi3g42190.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3439 bp)
>BART1_0-u52598.012 3439 150831_barley_pseudomolecules CTCTCCCTTTCCCTTTCCCTTTCCCTTCCCCTCCTCCTCCTCCTATTCTTCTTCTCGGCA CCAACAAGGAGGAGCAGAAGAGGAGAGGGGGCGACACAGTCTTGCCACTAGCTGCATTTC TCTCCTCTCGCATTGGTCGTCTTCTAGTTCCACCGTCCACCAGGGTGCGCAGACAGGGTG TTTGGCCCCAATTGCTCTACCAGACAGGTCTACGAGGAAGGAGCAAAAGAAGTTGCTCTA TCAGTTGTCAGTGGAATCAACTCAAGCATATTTGCGTATGGGCAAACAAGCAGCGGAAAG ACTTACACAATGACTGGAATTACTGAGTACAGTGTGATGGACATTTATGACTACATAGAG AAGCACCCTGAAAGAGAATTCATGCTGAAATTCTCAGCAATAGAGATATATAATGAAGCT GTGAGGGATCTTCTGAGCCATGATACGACACCTCTTAGACTGCTTGACGATCCTGAGAAA GGGACTACTGTTGAAAAGCTTACCGAGGAAACATTGAGGGACAAGGACCATCTTAGGGAT CTTCTTGGAATGTGTGAAGCTCAAAGAGAGATTGGAGAAACGGCTTTGAACGAAGCGAGT TCTAGGTCCCACCAAATACTCAGGCTGACAATCGAAAGTTCTGTTAAGCAGTATTTAGGA AGAAGCAAATCGAGCACCCTGGTGTCTTGTGTGAACTTTGTTGACCTAGCTGGAAGTGAG CGAGCATCTCAGACTGCTTCAGCTGGTATGAGGTTAAAAGAAGGTAGTCATATTAATCGA AGTCTGCTAACACTGGGAAAGGTTGTTCGCCAACTCAGCAAGGGAAGAAATGGTCATATC CCTTATAGAGATTCAAAGCTGACACGCATATTACAGTCCTCTTTGGGAGGCAATGCAAGA ACAGCCATTGTCTGCACAATGAGCCCTGCACACACTCATATTGAGCAATCCAGGAACACA CTTCTGTTTGCGACTTGCGCAAAGGAGGTAGTTACAAATGCACAGGTCAATGTAGTGATG TCTGACAAAGCACTACTGAAGCATCTACAGAGAGAGCTCGCAAGATTAGAAAATGAACTG AAATTGCCGGAGTCAGCCTCCTGCACTAGTCATGCTGAAGCTTTAAGAGAGAAGGATGCA CAGATTAAAAAGCTGGAAAAACAGCTTAGGGAATTGATAGAAGAAAAGGACACCGTTCAG TCTCAACTTAACTGTTTACTGAGAAGTGATGGTGACGACCATGACAATGATCGTGCTGCA AAGCGATGGGATGTCCATAGTCGGTCCTCAGAGTCTCTTGCACGAAATGCATCGGAGGAA GCACTTTCGGTTTCAGACACTTATGGAGGTTCTTATCAAGATCAAGGTCACGCAGTGTTT GATGGATCATATGTCTTCAGTGCTGATCATGATGGCTTGTCATCCCCCAATAAACCAATG GATCTTCCTCAGCAAACAAGGGTTCGGCAGCCAGTTTCACCTTGGCACCCTACTAGCAAC TATAGCTCTGATGGTGCGGAGTCATATAACATAAAGGAGGTAGCTTTCAGAACTGCATCT GAGGTATCCGAAGAACATTGTAGGGAAGTGCAATGTATAGAGATACATGAGCATAGAAGA AGCACAAGCCAGGAATTTAACGTATTACTCCATGAGGGCACTAAGCTCCACATACCTGAA GTAGAGGACATCTCTAGAGACGCAGTCCCGCAACCTGATGAAGTGCTAGAAGCAGGGAGC ATAACAGAAAAAATGGAAGATCATATGAAGATATACGCTAGCAAAGAGGAGCAGCAGGCC GAGATCATAGCAAATGCAGTAGAAGATCCTATTGAAGTGCATCAATGTGAATCTGATGAC TTTGCACACAACTTTGTCAAACTGTACCCATGTGATTCTAACATTTCTCTGGACGTTGGC AAACCTTACCCTCATGAATGTCTTACTGTAAAGAGGTGTATAACGAGCTCCAAGGATAGT GCATTGGCTAGAAGTCAAAGCTGCAGGGCTAGCTTCATGATCATTCCAAATAGTTGGTTT GATGATTCGGAAAACACCAGGCAGACACCACCTGATGAAATCTTCAGGTATCCTCCCAGA AGGCCTGATAAAGTCAGGAGAAGTCTGTACCAAGGAAATGATGATTGCCAAAACAATAAC ACTTCAGTAGACCTCTCTGCTGATTCTGGAGAAGTAGTTTGTGATGAAGTAGTTAAGGAC ACAGGTACCAGTGATGCAGTCAAGGACATGAGCACCAGTGCTGAAGTAGTCAAGGACATG AGTACCAATGATGAAGTAGTTAAGGCCATGAGCACCAGTGATGAAGTAGTCAAGGACATG AGCACCAGTGATGAAGTAGGCAAGGAGTCGAGTACCAGTGAAGCAGAACAAGAAGTTTGT ATGGGTGACATCAGTTGTGTCACAGAGCTGGAACAGAAGACAGCAAAACACCATGAGGAC CAACCCGAGGAACATGAGGCAGAGCAGACTGTTAGAGATGAGTGTACAGCAGTTAAAACT GTCAAAGATGTTGGCATAGACGCAGTCCCGAGTACCGCCGAGTCTCCTTCGTGCTGGCCT ATTGATTTTGCAAATAGGCAGCGGGAGATCATCGAGTTGTGGCACGACTGCAACGTGTCC CTAGTACACAGGACCTACTTCTTCCTCCTCTTCAAGGGAGATGCTGCAGATAGCGTCTAC ATGGAAGTGGAGCACAGGAGACTGTCCTTCATCCTCAGCTCGTTCAGCACCAACTCCGCA GGAGGCGAGCTTAACTCCGCAATCGCGTCCAGCTTGAAGAATCTGAAACGTGAGAGGGAC ATGTTCTACAAGCAGATGCTCAAGAAGCTCGCCAACGGGGACAAGGAGGGCATCTACACC AGATGGGGGATCGATCTGGGCTCCAAACAGCGGCGGCTTCAGCTATCTCGCCTCGTATGG ACGCGGGCTGACATGGAGCATGTCCGGGAGAGCGCCTCGCTGGTGGCGAGGCTGATCGAC CTGGTTGAGCCAGGGCAGGCTCTCAAGGAGATGTTCAGCCTCAACTTCACACTGGCTCCC AGAACCGAACGGCGGTCTTTCAGCCTGCTACTAGGCGCGTGATCTTTGACGTACGAAGGT AGAAGGGTTTGATTTACCTAGTAAGTACAAGGAGGTTGACTTAACAGGAGAAGAGGACTA TGCTGCGTATCATCGATTGGTTTCACGCATGTGTCTCTGCCTTGTTTTTGCTCGTTGTGT GCGTTTGAAAGAATTGTGTGCGCGTGCGTGTGTGATATTTCTGTGTGCAGTCTCACAAAA GTGAATCAATCAGACAGTACAGCTCTCCCTACCTTGCGTCGTATGTTCGTTTGTAAGAGT TTGTTCGTCAACCAAAATTTTGGAAGCCATGCGTGGGAGCATCGCACCATCCGGAATTTC CTATTTGCCCCACTTTGCA
Protein Sequence (930 aa)
>BART1_0-u52598.012 930 150831_barley_pseudomolecules MTGITEYSVMDIYDYIEKHPEREFMLKFSAIEIYNEAVRDLLSHDTTPLRLLDDPEKGTT VEKLTEETLRDKDHLRDLLGMCEAQREIGETALNEASSRSHQILRLTIESSVKQYLGRSK SSTLVSCVNFVDLAGSERASQTASAGMRLKEGSHINRSLLTLGKVVRQLSKGRNGHIPYR DSKLTRILQSSLGGNARTAIVCTMSPAHTHIEQSRNTLLFATCAKEVVTNAQVNVVMSDK ALLKHLQRELARLENELKLPESASCTSHAEALREKDAQIKKLEKQLRELIEEKDTVQSQL NCLLRSDGDDHDNDRAAKRWDVHSRSSESLARNASEEALSVSDTYGGSYQDQGHAVFDGS YVFSADHDGLSSPNKPMDLPQQTRVRQPVSPWHPTSNYSSDGAESYNIKEVAFRTASEVS EEHCREVQCIEIHEHRRSTSQEFNVLLHEGTKLHIPEVEDISRDAVPQPDEVLEAGSITE KMEDHMKIYASKEEQQAEIIANAVEDPIEVHQCESDDFAHNFVKLYPCDSNISLDVGKPY PHECLTVKRCITSSKDSALARSQSCRASFMIIPNSWFDDSENTRQTPPDEIFRYPPRRPD KVRRSLYQGNDDCQNNNTSVDLSADSGEVVCDEVVKDTGTSDAVKDMSTSAEVVKDMSTN DEVVKAMSTSDEVVKDMSTSDEVGKESSTSEAEQEVCMGDISCVTELEQKTAKHHEDQPE EHEAEQTVRDECTAVKTVKDVGIDAVPSTAESPSCWPIDFANRQREIIELWHDCNVSLVH RTYFFLLFKGDAADSVYMEVEHRRLSFILSSFSTNSAGGELNSAIASSLKNLKRERDMFY KQMLKKLANGDKEGIYTRWGIDLGSKQRRLQLSRLVWTRADMEHVRESASLVARLIDLVE PGQALKEMFSLNFTLAPRTERRSFSLLLGA