- Transcript BART1_0-u52598.011
- Transcript IDBART1_0-u52598.011
- Gene IDBART1_0-u52598
Barley RTD
Exon Structure of BART1_0-u52598.011
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 244648196 | 244647998 | + |
| chr7H | 2 | 244649011 | 244648793 | + |
| chr7H | 3 | 244649246 | 244649157 | + |
| chr7H | 4 | 244649454 | 244649354 | + |
| chr7H | 5 | 244649654 | 244649541 | + |
| chr7H | 6 | 244649826 | 244649745 | + |
| chr7H | 7 | 244650141 | 244649908 | + |
| chr7H | 8 | 244650328 | 244650221 | + |
| chr7H | 9 | 244651074 | 244650741 | + |
| chr7H | 10 | 244652881 | 244651173 | + |
| chr7H | 11 | 244653452 | 244653145 | + |
| chr7H | 12 | 244654394 | 244653589 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.157736 | 2.33624 | 3.76645 |
| morex | ETI | 0.378947 | 0.123384 | 0.684427 |
| morex | LEA | 1.57684 | 0.596697 | 1.56055 |
| morex | EPI | 0 | 0.337341 | 0.365436 |
| morex | ROO | 0.214158 | 0.708021 | 0.271497 |
| morex | ROO2 | 0.204837 | 0 | 0 |
| morex | NOD | 1.25643 | 0 | 0 |
| morex | RAC | 1.92793 | 1.69059 | 1.61197 |
| morex | INF1 | 2.9957 | 5.12955 | 3.01964 |
| morex | INF2 | 7.02291 | 8.09295 | 7.27605 |
| morex | CAR5 | 1.41355 | 1.92645 | 0 |
| morex | CAR15 | 0.209237 | 0 | 0.642119 |
| morex | LEM | 1.34369 | 0.731025 | 0.603577 |
| morex | LOD | 0 | 0.563825 | 0.748184 |
| morex | PAL | 0.843776 | 0.986198 | 2.58845 |
| morex | SEN | 0 | 0 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g43400.4 | +2 | 0.0 | 719 | 377/608 (62%) | protein|kinesin motor domain containing protein, expressed |
| TAIR PP10 | AT3G51150 @ ARAPORT AT3G51150.2 @ TAIR |
+1 | 1e-152 | 313 | 148/204 (73%) | Symbols: | ATP binding microtubule motor family protein | chr3:19002006-19006509 FORWARD LENGTH=1054 |
| BRACH PP3 | Bradi3g42190.2.p | +2 | 0.0 | 821 | 418/602 (69%) | pacid=32814335 transcript=Bradi3g42190.2 locus=Bradi3g42190 ID=Bradi3g42190.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (4304 bp)
>BART1_0-u52598.011 4304 150831_barley_pseudomolecules TTTTTTTCTACCAAAACCACTATAGTCCTCTCCCTTTCCCTTTCCCTTTCCCTTCCCCTC CTCCTCCTCCTATTCTTCTTCTCGGCACCAACAAGGAGGAGCAGAAGAGGAGAGGGGGCG ACACAGTCTTGCCACTAGCTGCATTTCTCTCCTCTCGCATTGGTCGTCTTCTAGTTCCAC CGTCCACCAGGGTGCGCAGGGCTGAGAAGGGCGATGGGGGCGGGGGAGGAGGATGCGGCG GCGGCATGGGAGAAGGTGGAGGCCAAGGAGGAGAGGATCATGGTGTCCGTGCGGGTGCGG CCCCTGAACGGCAGGGAGTCCGGCGACAGCTCCGACTGGGAGTGCATTAGCCCCACCACC GTCATGTTCCGGAGTACCGTTCCTGACCGCGCCATGTTCCCCACCGCCTACACCTATGAC AGGGTGTTTGGCCCCAATTGCTCTACCAGACAGGTCTACGAGGAAGGAGCAAAAGAAGTT GCTCTATCAGTTGTCAGTGGAATCAACTCAAGCATATTTGCGTATGGGCAAACAAGCAGC GGAAAGACTTACACAATGACTGGAATTACTGAGTACAGTGTGATGGACATTTATGACTAC ATAGAGAAGCACCCTGAAAGAGAATTCATGCTGAAATTCTCAGCAATAGAGATATATAAT GAAGCTGTGAGGGATCTTCTGAGCCATGATACGACACCTCTTAGACTGCTTGACGATCCT GAGAAAGGGACTACTGTTGAAAAGCTTACCGAGGAAACATTGAGGGACAAGGACCATCTT AGGGATCTTCTTGGAATGTGTGAAGCTCAAAGAGAGATTGGAGAAACGGCTTTGAACGAA GCGAGTTCTAGGTCCCACCAAATACTCAGGCTGGTTGGTGGCTCTCTTATATATTTATTT TACACTACACTTGTGGACCACCCCGCAAAAAAAAAAGATGATGATTTTGTTGACAAGTTT TTGTTACATTCAGACAATCGAAAGTTCTGTTAAGCAGTATTTAGGAAGAAGCAAATCGAG CACCCTGGTGTCTTGTGTGAACTTTGTTGACCTAGCTGGAAGTGAGCGAGCATCTCAGAC TGCTTCAGCTGGTATGAGGTTAAAAGAAGGTAGTCATATTAATCGAAGTCTGCTAACACT GGGAAAGCAAGGGAAGAAATGGTCATATCCCTTATAGAGATTCAAAGCTGACACGCATAT TACAGTCCTCTTTGGGAGGCAATGCAAGAACAGCCATTGTCTGCACAATGAGCCCTGCAC ACACTCATATTGAGCAATCCAGGAACACACTTCTGTTTGCGACTTGCGCAAAGGAGGTAG TTACAAATGCACAGGTCAATGTAGTGATGTCTGACAAAGCACTACTGAAGCATCTACAGA GAGAGCTCGCAAGATTAGAAAATGAACTGAAATTGCCGGAGTCAGCCTCCTGCACTAGTC ATGCTGAAGCTTTAAGAGAGAAGGATGCACAGATTAAAAAGCTGGAAAAACAGCTTAGGG AATTGATAGAAGAAAAGGACACCGTTCAGTCTCAACTTAACTGTTTACTGAGAAGTGATG GTGACGACCATGACAATGATCGTGCTGCAAAGCGATGGGTACTATCTCTCTCAGGCTACT CATAGTGGGGGTATCATAGAGTACTATCATGCATATAGTATCATGCAAAAGTGATAGTAC TATTGTATGATACTACCTCCATAATGCATAGTATCATAAACTAGTATCATAGATGATCTC ATTTATTGACATGCATGACACATAGTAGCATAGCATTTAACATGATACGATATCTACCTA TGTTACTCTAACCTTCTCTCTCTTCTTTAATTGTCTGTCACATCAGCATGTTTGCTAGTC CCAAGTACATGATACTACCTAAGTTACTCTCATTATGACCAGCCTCATACACACGGACTT AATTTTTTACATTATTATAATGTGTGACATTTAATGATCTGTTGTCCTTTGATAGGATGT CCATAGTCGGTCCTCAGAGTCTCTTGCACGAAATGCATCGGAGGAAGCACTTTCGGTTTC AGACACTTATGGAGGTTCTTATCAAGATCAAGGTCACGCAGTGTTTGATGGATCATATGT CTTCAGTGCTGATCATGATGGCTTGTCATCCCCCAATAAACCAATGGATCTTCCTCAGCA AACAAGGGTTCGGCAGCCAGTTTCACCTTGGCACCCTACTAGCAACTATAGCTCTGATGG TGCGGAGTCATATAACATAAAGGAGGTAGCTTTCAGAACTGCATCTGAGGTATCCGAAGA ACATTGTAGGGAAGTGCAATGTATAGAGATACATGAGCATAGAAGAAGCACAAGCCAGGA ATTTAACGTATTACTCCATGAGGGCACTAAGCTCCACATACCTGAAGTAGAGGACATCTC TAGAGACGCAGTCCCGCAACCTGATGAAGTGCTAGAAGCAGGGAGCATAACAGAAAAAAT GGAAGATCATATGAAGATATACGCTAGCAAAGAGGAGCAGCAGGCCGAGATCATAGCAAA TGCAGTAGAAGATCCTATTGAAGTGCATCAATGTGAATCTGATGACTTTGCACACAACTT TGTCAAACTGTACCCATGTGATTCTAACATTTCTCTGGACGTTGGCAAACCTTACCCTCA TGAATGTCTTACTGTAAAGAGGTGTATAACGAGCTCCAAGGATAGTGCATTGGCTAGAAG TCAAAGCTGCAGGGCTAGCTTCATGATCATTCCAAATAGTTGGTTTGATGATTCGGAAAA CACCAGGCAGACACCACCTGATGAAATCTTCAGGTATCCTCCCAGAAGGCCTGATAAAGT CAGGAGAAGTCTGTACCAAGGAAATGATGATTGCCAAAACAATAACACTTCAGTAGACCT CTCTGCTGATTCTGGAGAAGTAGTTTGTGATGAAGTAGTTAAGGACACAGGTACCAGTGA TGCAGTCAAGGACATGAGCACCAGTGCTGAAGTAGTCAAGGACATGAGTACCAATGATGA AGTAGTTAAGGCCATGAGCACCAGTGATGAAGTAGTCAAGGACATGAGCACCAGTGATGA AGTAGGCAAGGAGTCGAGTACCAGTGAAGCAGAACAAGAAGTTTGTATGGGTGACATCAG TTGTGTCACAGAGCTGGAACAGAAGACAGCAAAACACCATGAGGACCAACCCGAGGAACA TGAGGCAGAGCAGACTGTTAGAGATGAGTGTACAGCAGTTAAAACTGTCAAAGATGTTGG CATAGACGCAGTCCCGAGTACCGCCGAGTCTCCTTCGTGCTGGCCTATTGATTTTGCAAA TAGGCAGCGGGAGATCATCGAGTTGTGGCACGACTGCAACGTGTCCCTAGTACACAGGAC CTACTTCTTCCTCCTCTTCAAGGGAGATGCTGCAGATAGCGTCTACATGGAAGTGGAGCA CAGGAGACTGTCCTTCATCCTCAGCTCGTTCAGCACCAACTCCGCAGGAGGCGAGCTTAA CTCCGCAATCGCGTCCAGCTTGAAGAATCTGAAACGTGAGAGGGACATGTTCTACAAGCA GATGCTCAAGAAGCTCGCCAACGGGGACAAGGAGGGCATCTACACCAGATGGGGGATCGA TCTGGGCTCCAAACAGCGGCGGCTTCAGCTATCTCGCCTCGTATGGACGCGGGCTGACAT GGAGCATGTCCGGGAGAGCGCCTCGCTGGTGGCGAGGCTGATCGACCTGGTTGAGCCAGG GCAGGCTCTCAAGGAGATGTTCAGCCTCAACTTCACACTGGCTCCCAGAACCGAACGGCG GTCTTTCAGCCTGCTACTAGGCGCGTGATCTTTGACGTACGAAGGTAGAAGGGTTTGATT TACCTAGTAAGTACAAGGAGGTTGACTTAACAGGAGAAGAGGACTATGCTGCGTATCATC GATTGGTTTCACGCATGTGTCTCTGCCTTGTTTTTGCTCGTTGTGTGCGTTTGAAAGAAT TGTGTGCGCGTGCGTGTGTGATATTTCTGTGTGCAGTCTCACAAAAGTGAATCAATCAGA CAGTACAGCTCTCCCTACCTTGCGTCGTATGTTCGTTTGTAAGAGTTTGTTCGTCAACCA AAATTTTGGAAGCCATGCGTGGGAGCATCGCACCATCCGGAATTTCCTATTTGCCCCACT TTGCATGGGCCGGCCTAGTTTTGCCTGGTTTTGTAAACCTTTTAGGAGGCTCTTTGACAC GTTTTTTCATTTTGTACAGGTTTTTCTGTTTTCTTTTTTCCTTTTTTAAGGTTATTATAT CTTTTTTAAACTTCGTAAAGTTCAAAAAATGTTCTAAATTTTAA
Protein Sequence (554 aa)
>BART1_0-u52598.011 554 150831_barley_pseudomolecules MDLPQQTRVRQPVSPWHPTSNYSSDGAESYNIKEVAFRTASEVSEEHCREVQCIEIHEHR RSTSQEFNVLLHEGTKLHIPEVEDISRDAVPQPDEVLEAGSITEKMEDHMKIYASKEEQQ AEIIANAVEDPIEVHQCESDDFAHNFVKLYPCDSNISLDVGKPYPHECLTVKRCITSSKD SALARSQSCRASFMIIPNSWFDDSENTRQTPPDEIFRYPPRRPDKVRRSLYQGNDDCQNN NTSVDLSADSGEVVCDEVVKDTGTSDAVKDMSTSAEVVKDMSTNDEVVKAMSTSDEVVKD MSTSDEVGKESSTSEAEQEVCMGDISCVTELEQKTAKHHEDQPEEHEAEQTVRDECTAVK TVKDVGIDAVPSTAESPSCWPIDFANRQREIIELWHDCNVSLVHRTYFFLLFKGDAADSV YMEVEHRRLSFILSSFSTNSAGGELNSAIASSLKNLKRERDMFYKQMLKKLANGDKEGIY TRWGIDLGSKQRRLQLSRLVWTRADMEHVRESASLVARLIDLVEPGQALKEMFSLNFTLA PRTERRSFSLLLGA