- Transcript BART1_0-u52598.010
- Transcript IDBART1_0-u52598.010
- Gene IDBART1_0-u52598
Barley RTD
Exon Structure of BART1_0-u52598.010
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 244648517 | 244647995 | + |
| chr7H | 2 | 244649011 | 244648793 | + |
| chr7H | 3 | 244649246 | 244649157 | + |
| chr7H | 4 | 244649454 | 244649354 | + |
| chr7H | 5 | 244649654 | 244649541 | + |
| chr7H | 6 | 244649826 | 244649745 | + |
| chr7H | 7 | 244649975 | 244649908 | + |
| chr7H | 8 | 244650141 | 244650076 | + |
| chr7H | 9 | 244650345 | 244650221 | + |
| chr7H | 10 | 244651074 | 244650741 | + |
| chr7H | 11 | 244651289 | 244651173 | + |
| chr7H | 12 | 244652881 | 244651667 | + |
| chr7H | 13 | 244653452 | 244653142 | + |
| chr7H | 14 | 244654213 | 244653589 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.184394 | 0.813109 | 0.838724 |
| morex | ETI | 0.450483 | 0 | 0 |
| morex | LEA | 0.663659 | 0 | 0.534439 |
| morex | EPI | 0.587011 | 1.37842 | 0.703866 |
| morex | ROO | 0 | 0.395531 | 0 |
| morex | ROO2 | 0.506455 | 0.582317 | 0.495538 |
| morex | NOD | 0.923206 | 1.27096 | 0.369171 |
| morex | RAC | 2.58271 | 3.33202 | 3.41341 |
| morex | INF1 | 1.31166 | 0.444222 | 1.04657 |
| morex | INF2 | 2.61768 | 1.8991 | 3.03996 |
| morex | CAR5 | 0.425989 | 0.467275 | 0.455219 |
| morex | CAR15 | 0.122358 | 0.133199 | 0.562925 |
| morex | LEM | 2.3887 | 2.15354 | 1.48502 |
| morex | LOD | 1.08689 | 0.803662 | 0.446992 |
| morex | PAL | 4.67862 | 5.96136 | 6.17993 |
| morex | SEN | 0 | 0.38512 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g43400.2 | +1 | 0.0 | 1494 | 749/1023 (73%) | protein|kinesin motor domain containing protein, expressed |
| TAIR PP10 | AT5G66310 @ ARAPORT AT5G66310.1 @ TAIR |
+1 | 0.0 | 718 | 458/1093 (42%) | Symbols: | ATP binding microtubule motor family protein | chr5:26485786-26490304 REVERSE LENGTH=1063 |
| BRACH PP3 | Bradi3g42190.1.p | +1 | 0.0 | 1578 | 792/1017 (78%) | pacid=32814334 transcript=Bradi3g42190.1 locus=Bradi3g42190 ID=Bradi3g42190.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3990 bp)
>BART1_0-u52598.010 3990 150831_barley_pseudomolecules ATTTTTTTTTCTACCAAAACCACTATAGTCCTCTCCCTTTCCCTTTCCCTTTCCCTTCCC CTCCTCCTCCTCCTATTCTTCTTCTCGGCACCAACAAGGAGGAGCAGAAGAGGAGAGGGG GCGACACAGTCTTGCCACTAGCTGCATTTCTCTCCTCTCGCATTGGTCGTCTTCTAGTTC CACCGTCCACCAGGGTGCGCAGGTAACGTTGCTTCGCCTTCCCTTCTTGGCTTGTTCCTC GCGCGGAATGTGATCAGTGCTTGGTTCTGTTGGATAATGGCTGTTACTACGTGCTCGGGT ATGCATAGAAAAACAAAGTCTTGATACTCCACTGTCTCCCCCTCTATCCTCTCCTACCCC CCATGTGAGGTGCGTAAACAAAATTGAAGAGAGTGGCCGGGAGCGTGGCGGGGACCATGG TCCGTCCCTTCCTCTCGCGACAACAGCGCAAAACTCCAACCCAGCAAGCGGCGGCGGCCA AAGATAATCCGTAGCCGCGCAGGCAGCATTAGTACATGTGCGAGGCTGAGAAGGGCGATG GGGGCGGGGGAGGAGGATGCGGCGGCGGCATGGGAGAAGGTGGAGGCCAAGGAGGAGAGG ATCATGGTGTCCGTGCGGGTGCGGCCCCTGAACGGCAGGGAGTCCGGCGACAGCTCCGAC TGGGAGTGCATTAGCCCCACCACCGTCATGTTCCGGAGTACCGTTCCTGACCGCGCCATG TTCCCCACCGCCTACACCTATGACAGGGTGTTTGGCCCCAATTGCTCTACCAGACAGGTC TACGAGGAAGGAGCAAAAGAAGTTGCTCTATCAGTTGTCAGTGGAATCAACTCAAGCATA TTTGCGTATGGGCAAACAAGCAGCGGAAAGACTTACACAATGACTGGAATTACTGAGTAC AGTGTGATGGACATTTATGACTACATAGAGAAGCACCCTGAAAGAGAATTCATGCTGAAA TTCTCAGCAATAGAGATATATAATGAAGCTGTGAGGGATCTTCTGAGCCATGATACGACA CCTCTTAGACTGCTTGACGATCCTGAGAAAGGGACTACTGTTGAAAAGCTTACCGAGGAA ACATTGAGGGACAAGGACCATCTTAGGGATCTTCTTGGAATGTGTGAAGCTCAAAGAGAG ATTGGAGAAACGGCTTTGAACGAAGCGAGTTCTAGGTCCCACCAAATACTCAGGCTGACA ATCGAAAGTTCTGTTAAGCAGTATTTAGGAAGAAGCAAATCGAGCACCCTGGTGTCTTGT GTGAACTTTGTTGACCTAGCTGGAAGTGAGCGAGCATCTCAGACTGCTTCAGCTGGTATG AGGTTAAAAGAAGGTAGTCATATTAATCGAAGTCTGCTAACACTGGGAAAGGTTGTTCGC CAACTCAGCAAGGGAAGAAATGGTCATATCCCTTATAGAGATTCAAAGCTGACACGCATA TTACAGTCCTCTTTGGGAGGCAATGCAAGAACAGCCATTGTCTGCACAATGAGCCCTGCA CACACTCATATTGAGCAATCCAGGAACACACTTCTGTTTGCGACTTGCGCAAAGGAGGTA GTTACAAATGCACAGGTCAATGTAGTGATGTCTGACAAAGCACTACTGAAGCATCTACAG AGAGAGCTCGCAAGATTAGAAAATGAACTGAAATTGCCGGAGTCAGCCTCCTGCACTAGT CATGCTGAAGCTTTAAGAGAGAAGGATGCACAGATTAAAAAGCTGGAAAAACAGCTTAGG GAATTGATAGAAGAAAAGGACACCGTTCAGTCTCAACTTAACTGTTTACTGAGAAGTGAT GGTGACGACCATGACAATGATCGTGCTGCAAAGCGATGGGATGTCCATAGTCGGTCCTCA GAGTCTCTTGCACGAAATGCATCGGAGGAAGCACTTTCGGTTTCAGACACTTATGGAGGT TCTTATCAAGATCAAGGTCACGCAGTGTTTGATGGATCATATGTCTTCAGTGCTGATCAT GATGGCTTGTCATCCCCCAATAAACCAATGGATCTTCCTCAGCAAACAAGGGTTCGGCAG CCAGTTTCACCTTGGCACCCTACTAGCAACTATAGCTCTGATGGTGCGGAGTCATATAAC ATAAAGGAGGTAGCTTTCAGAACTGCATCTGAGGTATCCGAAGAACATTGTAGGGAAGTG CAATGTATAGAGATACATGAGCATAGAAGAAGCACAAGCCAGGAATTTAACGTATTACTC CATGAGGGCACTAAGCTCCACATACCTGAAGTAGAGGACATCTCTAGAGACGCAGTCCCG CAACCTGATGAAGTGCTAGAAGCAGGGAGCATAACAGAAAAAATGGAAGATCATATGAAG ATATACGCTAGCAAAGAGGAGCAGCAGGCCGAGATCATAGCAAATGCAGTAGAAGATCCT ATTGAAGTGCATCAATGTGAATCTGATGACTTTGCACACAACTTTGTCAAACTGTACCCA TGTGATTCTAACATTTCTCTGGACGTTGGCAAACCTTACCCTCATGAATGTCTTACTGTA AAGAGGTGTATAACGAGCTCCAAGGATAGTGCATTGGCTAGAAGTCAAAGCTGCAGGGCT AGCTTCATGATCATTCCAAATAGTTGGTTTGATGATTCGGAAAACACCAGGCAGACACCA CCTGATGAAATCTTCAGGTATCCTCCCAGAAGGCCTGATAAAGTCAGGAGAAGTCTGTAC CAAGGAAATGATGATTGCCAAAACAATAACACTTCAGTAGACCTCTCTGCTGATTCTGGA GAAGTAGTTTGTGATGAAGTAGTTAAGGACACAGGTACCAGTGATGCAGTCAAGGACATG AGCACCAGTGCTGAAGTAGTCAAGGACATGAGTACCAATGATGAAGTAGTTAAGGCCATG AGCACCAGTGATGAAGTAGTCAAGGACATGAGCACCAGTGATGAAGTAGGCAAGGAGTCG AGTACCAGTGAAGCAGAACAAGAAGTTTGTATGGGTGACATCAGTTGTGTCACAGAGCTG GAACAGAAGACAGCAAAACACCATGAGGACCAACCCGAGGAACATGAGGCAGAGCAGCAG ACTGTTAGAGATGAGTGTACAGCAGTTAAAACTGTCAAAGATGTTGGCATAGACGCAGTC CCGAGTACCGCCGAGTCTCCTTCGTGCTGGCCTATTGATTTTGCAAATAGGCAGCGGGAG ATCATCGAGTTGTGGCACGACTGCAACGTGTCCCTAGTACACAGGACCTACTTCTTCCTC CTCTTCAAGGGAGATGCTGCAGATAGCGTCTACATGGAAGTGGAGCACAGGAGACTGTCC TTCATCCTCAGCTCGTTCAGCACCAACTCCGCAGGAGGCGAGCTTAACTCCGCAATCGCG TCCAGCTTGAAGAATCTGAAACGTGAGAGGGACATGTTCTACAAGCAGATGCTCAAGAAG CTCGCCAACGGGGACAAGGAGGGCATCTACACCAGATGGGGGATCGATCTGGGCTCCAAA CAGCGGCGGCTTCAGCTATCTCGCCTCGTATGGACGCGGGCTGACATGGAGCATGTCCGG GAGAGCGCCTCGCTGGTGGCGAGGCTGATCGACCTGGTTGAGCCAGGGCAGGCTCTCAAG GAGATGTTCAGCCTCAACTTCACACTGGCTCCCAGAACCGAACGGCGGTCTTTCAGCCTG CTACTAGGCGCGTGATCTTTGACGTACGAAGGTAGAAGGGTTTGATTTACCTAGTAAGTA CAAGGAGGTTGACTTAACAGGAGAAGAGGACTATGCTGCGTATCATCGATTGGTTTCACG CATGTGTCTCTGCCTTGTTTTTGCTCGTTGTGTGCGTTTGAAAGAATTGTGTGCGCGTGC GTGTGTGATATTTCTGTGTGCAGTCTCACAAAAGTGAATCAATCAGACAGTACAGCTCTC CCTACCTTGCGTCGTATGTTCGTTTGTAAGAGTTTGTTCGTCAACCAAAATTTTGGAAGC CATGCGTGGGAGCATCGCACCATCCGGAAT
Protein Sequence (1045 aa)
>BART1_0-u52598.010 1045 150831_barley_pseudomolecules MGAGEEDAAAAWEKVEAKEERIMVSVRVRPLNGRESGDSSDWECISPTTVMFRSTVPDRA MFPTAYTYDRVFGPNCSTRQVYEEGAKEVALSVVSGINSSIFAYGQTSSGKTYTMTGITE YSVMDIYDYIEKHPEREFMLKFSAIEIYNEAVRDLLSHDTTPLRLLDDPEKGTTVEKLTE ETLRDKDHLRDLLGMCEAQREIGETALNEASSRSHQILRLTIESSVKQYLGRSKSSTLVS CVNFVDLAGSERASQTASAGMRLKEGSHINRSLLTLGKVVRQLSKGRNGHIPYRDSKLTR ILQSSLGGNARTAIVCTMSPAHTHIEQSRNTLLFATCAKEVVTNAQVNVVMSDKALLKHL QRELARLENELKLPESASCTSHAEALREKDAQIKKLEKQLRELIEEKDTVQSQLNCLLRS DGDDHDNDRAAKRWDVHSRSSESLARNASEEALSVSDTYGGSYQDQGHAVFDGSYVFSAD HDGLSSPNKPMDLPQQTRVRQPVSPWHPTSNYSSDGAESYNIKEVAFRTASEVSEEHCRE VQCIEIHEHRRSTSQEFNVLLHEGTKLHIPEVEDISRDAVPQPDEVLEAGSITEKMEDHM KIYASKEEQQAEIIANAVEDPIEVHQCESDDFAHNFVKLYPCDSNISLDVGKPYPHECLT VKRCITSSKDSALARSQSCRASFMIIPNSWFDDSENTRQTPPDEIFRYPPRRPDKVRRSL YQGNDDCQNNNTSVDLSADSGEVVCDEVVKDTGTSDAVKDMSTSAEVVKDMSTNDEVVKA MSTSDEVVKDMSTSDEVGKESSTSEAEQEVCMGDISCVTELEQKTAKHHEDQPEEHEAEQ QTVRDECTAVKTVKDVGIDAVPSTAESPSCWPIDFANRQREIIELWHDCNVSLVHRTYFF LLFKGDAADSVYMEVEHRRLSFILSSFSTNSAGGELNSAIASSLKNLKRERDMFYKQMLK KLANGDKEGIYTRWGIDLGSKQRRLQLSRLVWTRADMEHVRESASLVARLIDLVEPGQAL KEMFSLNFTLAPRTERRSFSLLLGA