- Transcript BART1_0-u52598.009
- Transcript IDBART1_0-u52598.009
- Gene IDBART1_0-u52598
Barley RTD
Exon Structure of BART1_0-u52598.009
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 244648196 | 244647988 | + |
| chr7H | 2 | 244649246 | 244649157 | + |
| chr7H | 3 | 244649454 | 244649354 | + |
| chr7H | 4 | 244649654 | 244649541 | + |
| chr7H | 5 | 244649826 | 244649745 | + |
| chr7H | 6 | 244649975 | 244649908 | + |
| chr7H | 7 | 244650141 | 244650076 | + |
| chr7H | 8 | 244650345 | 244650221 | + |
| chr7H | 9 | 244651074 | 244650741 | + |
| chr7H | 10 | 244651289 | 244651173 | + |
| chr7H | 11 | 244652881 | 244651667 | + |
| chr7H | 12 | 244653452 | 244653142 | + |
| chr7H | 13 | 244654280 | 244653589 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.000000944703 | 0 | 0.0000000015329 |
| morex | ETI | 0.000266113 | 0.000000753528 | 0.452035 |
| morex | LEA | 0 | 0 | 0 |
| morex | EPI | 0 | 0 | 0.000000376896 |
| morex | ROO | 0.010342 | 0 | 0 |
| morex | ROO2 | 3.23935 | 0.00000568024 | 1.83726 |
| morex | NOD | 0 | 0.00000277084 | 0.0000313514 |
| morex | RAC | 0.00014588 | 0.740143 | 2.90409 |
| morex | INF1 | 0 | 0 | 0 |
| morex | INF2 | 0 | 0 | 0 |
| morex | CAR5 | 0 | 0 | 0 |
| morex | CAR15 | 0 | 0 | 0 |
| morex | LEM | 1.30224 | 0.80843 | 0.12703 |
| morex | LOD | 0.000208133 | 0.0000416195 | 0.300151 |
| morex | PAL | 0.0081032 | 0.452213 | 0.0204866 |
| morex | SEN | 0.00539507 | 0.000000000185693 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g43400.2 | +2 | 0.0 | 1396 | 705/975 (72%) | protein|kinesin motor domain containing protein, expressed |
| TAIR PP10 | AT5G66310 @ ARAPORT AT5G66310.1 @ TAIR |
+2 | 0.0 | 664 | 432/1041 (41%) | Symbols: | ATP binding microtubule motor family protein | chr5:26485786-26490304 REVERSE LENGTH=1063 |
| BRACH PP3 | Bradi3g42190.1.p | +2 | 0.0 | 1502 | 754/969 (78%) | pacid=32814334 transcript=Bradi3g42190.1 locus=Bradi3g42190 ID=Bradi3g42190.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3524 bp)
>BART1_0-u52598.009 3524 150831_barley_pseudomolecules TCCCTTCATTTTTTTTTCTACCAAAACCACTATAGTCCTCTCCCTTTCCCTTTCCCTTTC CCTTCCCCTCCTCCTCCTCCTATTCTTCTTCTCGGCACCAACAAGGAGGAGCAGAAGAGG AGAGGGGGCGACACAGTCTTGCCACTAGCTGCATTTCTCTCCTCTCGCATTGGTCGTCTT CTAGTTCCACCGTCCACCAGGGTGCGCAGACAGGGTGTTTGGCCCCAATTGCTCTACCAG ACAGGTCTACGAGGAAGGAGCAAAAGAAGTTGCTCTATCAGTTGTCAGTGGAATCAACTC AAGCATATTTGCGTATGGGCAAACAAGCAGCGGAAAGACTTACACAATGACTGGAATTAC TGAGTACAGTGTGATGGACATTTATGACTACATAGAGAAGCACCCTGAAAGAGAATTCAT GCTGAAATTCTCAGCAATAGAGATATATAATGAAGCTGTGAGGGATCTTCTGAGCCATGA TACGACACCTCTTAGACTGCTTGACGATCCTGAGAAAGGGACTACTGTTGAAAAGCTTAC CGAGGAAACATTGAGGGACAAGGACCATCTTAGGGATCTTCTTGGAATGTGTGAAGCTCA AAGAGAGATTGGAGAAACGGCTTTGAACGAAGCGAGTTCTAGGTCCCACCAAATACTCAG GCTGACAATCGAAAGTTCTGTTAAGCAGTATTTAGGAAGAAGCAAATCGAGCACCCTGGT GTCTTGTGTGAACTTTGTTGACCTAGCTGGAAGTGAGCGAGCATCTCAGACTGCTTCAGC TGGTATGAGGTTAAAAGAAGGTAGTCATATTAATCGAAGTCTGCTAACACTGGGAAAGGT TGTTCGCCAACTCAGCAAGGGAAGAAATGGTCATATCCCTTATAGAGATTCAAAGCTGAC ACGCATATTACAGTCCTCTTTGGGAGGCAATGCAAGAACAGCCATTGTCTGCACAATGAG CCCTGCACACACTCATATTGAGCAATCCAGGAACACACTTCTGTTTGCGACTTGCGCAAA GGAGGTAGTTACAAATGCACAGGTCAATGTAGTGATGTCTGACAAAGCACTACTGAAGCA TCTACAGAGAGAGCTCGCAAGATTAGAAAATGAACTGAAATTGCCGGAGTCAGCCTCCTG CACTAGTCATGCTGAAGCTTTAAGAGAGAAGGATGCACAGATTAAAAAGCTGGAAAAACA GCTTAGGGAATTGATAGAAGAAAAGGACACCGTTCAGTCTCAACTTAACTGTTTACTGAG AAGTGATGGTGACGACCATGACAATGATCGTGCTGCAAAGCGATGGGATGTCCATAGTCG GTCCTCAGAGTCTCTTGCACGAAATGCATCGGAGGAAGCACTTTCGGTTTCAGACACTTA TGGAGGTTCTTATCAAGATCAAGGTCACGCAGTGTTTGATGGATCATATGTCTTCAGTGC TGATCATGATGGCTTGTCATCCCCCAATAAACCAATGGATCTTCCTCAGCAAACAAGGGT TCGGCAGCCAGTTTCACCTTGGCACCCTACTAGCAACTATAGCTCTGATGGTGCGGAGTC ATATAACATAAAGGAGGTAGCTTTCAGAACTGCATCTGAGGTATCCGAAGAACATTGTAG GGAAGTGCAATGTATAGAGATACATGAGCATAGAAGAAGCACAAGCCAGGAATTTAACGT ATTACTCCATGAGGGCACTAAGCTCCACATACCTGAAGTAGAGGACATCTCTAGAGACGC AGTCCCGCAACCTGATGAAGTGCTAGAAGCAGGGAGCATAACAGAAAAAATGGAAGATCA TATGAAGATATACGCTAGCAAAGAGGAGCAGCAGGCCGAGATCATAGCAAATGCAGTAGA AGATCCTATTGAAGTGCATCAATGTGAATCTGATGACTTTGCACACAACTTTGTCAAACT GTACCCATGTGATTCTAACATTTCTCTGGACGTTGGCAAACCTTACCCTCATGAATGTCT TACTGTAAAGAGGTGTATAACGAGCTCCAAGGATAGTGCATTGGCTAGAAGTCAAAGCTG CAGGGCTAGCTTCATGATCATTCCAAATAGTTGGTTTGATGATTCGGAAAACACCAGGCA GACACCACCTGATGAAATCTTCAGGTATCCTCCCAGAAGGCCTGATAAAGTCAGGAGAAG TCTGTACCAAGGAAATGATGATTGCCAAAACAATAACACTTCAGTAGACCTCTCTGCTGA TTCTGGAGAAGTAGTTTGTGATGAAGTAGTTAAGGACACAGGTACCAGTGATGCAGTCAA GGACATGAGCACCAGTGCTGAAGTAGTCAAGGACATGAGTACCAATGATGAAGTAGTTAA GGCCATGAGCACCAGTGATGAAGTAGTCAAGGACATGAGCACCAGTGATGAAGTAGGCAA GGAGTCGAGTACCAGTGAAGCAGAACAAGAAGTTTGTATGGGTGACATCAGTTGTGTCAC AGAGCTGGAACAGAAGACAGCAAAACACCATGAGGACCAACCCGAGGAACATGAGGCAGA GCAGCAGACTGTTAGAGATGAGTGTACAGCAGTTAAAACTGTCAAAGATGTTGGCATAGA CGCAGTCCCGAGTACCGCCGAGTCTCCTTCGTGCTGGCCTATTGATTTTGCAAATAGGCA GCGGGAGATCATCGAGTTGTGGCACGACTGCAACGTGTCCCTAGTACACAGGACCTACTT CTTCCTCCTCTTCAAGGGAGATGCTGCAGATAGCGTCTACATGGAAGTGGAGCACAGGAG ACTGTCCTTCATCCTCAGCTCGTTCAGCACCAACTCCGCAGGAGGCGAGCTTAACTCCGC AATCGCGTCCAGCTTGAAGAATCTGAAACGTGAGAGGGACATGTTCTACAAGCAGATGCT CAAGAAGCTCGCCAACGGGGACAAGGAGGGCATCTACACCAGATGGGGGATCGATCTGGG CTCCAAACAGCGGCGGCTTCAGCTATCTCGCCTCGTATGGACGCGGGCTGACATGGAGCA TGTCCGGGAGAGCGCCTCGCTGGTGGCGAGGCTGATCGACCTGGTTGAGCCAGGGCAGGC TCTCAAGGAGATGTTCAGCCTCAACTTCACACTGGCTCCCAGAACCGAACGGCGGTCTTT CAGCCTGCTACTAGGCGCGTGATCTTTGACGTACGAAGGTAGAAGGGTTTGATTTACCTA GTAAGTACAAGGAGGTTGACTTAACAGGAGAAGAGGACTATGCTGCGTATCATCGATTGG TTTCACGCATGTGTCTCTGCCTTGTTTTTGCTCGTTGTGTGCGTTTGAAAGAATTGTGTG CGCGTGCGTGTGTGATATTTCTGTGTGCAGTCTCACAAAAGTGAATCAATCAGACAGTAC AGCTCTCCCTACCTTGCGTCGTATGTTCGTTTGTAAGAGTTTGTTCGTCAACCAAAATTT TGGAAGCCATGCGTGGGAGCATCGCACCATCCGGAATTTCCTATTTGCCCCACTTTGCAT GGGCCGGCCTAGTTTTGCCTGGTTTTGTAAACCTTTTAGGAGGC
Protein Sequence (931 aa)
>BART1_0-u52598.009 931 150831_barley_pseudomolecules MTGITEYSVMDIYDYIEKHPEREFMLKFSAIEIYNEAVRDLLSHDTTPLRLLDDPEKGTT VEKLTEETLRDKDHLRDLLGMCEAQREIGETALNEASSRSHQILRLTIESSVKQYLGRSK SSTLVSCVNFVDLAGSERASQTASAGMRLKEGSHINRSLLTLGKVVRQLSKGRNGHIPYR DSKLTRILQSSLGGNARTAIVCTMSPAHTHIEQSRNTLLFATCAKEVVTNAQVNVVMSDK ALLKHLQRELARLENELKLPESASCTSHAEALREKDAQIKKLEKQLRELIEEKDTVQSQL NCLLRSDGDDHDNDRAAKRWDVHSRSSESLARNASEEALSVSDTYGGSYQDQGHAVFDGS YVFSADHDGLSSPNKPMDLPQQTRVRQPVSPWHPTSNYSSDGAESYNIKEVAFRTASEVS EEHCREVQCIEIHEHRRSTSQEFNVLLHEGTKLHIPEVEDISRDAVPQPDEVLEAGSITE KMEDHMKIYASKEEQQAEIIANAVEDPIEVHQCESDDFAHNFVKLYPCDSNISLDVGKPY PHECLTVKRCITSSKDSALARSQSCRASFMIIPNSWFDDSENTRQTPPDEIFRYPPRRPD KVRRSLYQGNDDCQNNNTSVDLSADSGEVVCDEVVKDTGTSDAVKDMSTSAEVVKDMSTN DEVVKAMSTSDEVVKDMSTSDEVGKESSTSEAEQEVCMGDISCVTELEQKTAKHHEDQPE EHEAEQQTVRDECTAVKTVKDVGIDAVPSTAESPSCWPIDFANRQREIIELWHDCNVSLV HRTYFFLLFKGDAADSVYMEVEHRRLSFILSSFSTNSAGGELNSAIASSLKNLKRERDMF YKQMLKKLANGDKEGIYTRWGIDLGSKQRRLQLSRLVWTRADMEHVRESASLVARLIDLV EPGQALKEMFSLNFTLAPRTERRSFSLLLGA