- Transcript BART1_0-u52598.008
- Transcript IDBART1_0-u52598.008
- Gene IDBART1_0-u52598
Barley RTD
Exon Structure of BART1_0-u52598.008
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 244648196 | 244647986 | + |
| chr7H | 2 | 244649246 | 244649157 | + |
| chr7H | 3 | 244649454 | 244649354 | + |
| chr7H | 4 | 244649654 | 244649541 | + |
| chr7H | 5 | 244649826 | 244649745 | + |
| chr7H | 6 | 244649975 | 244649908 | + |
| chr7H | 7 | 244650345 | 244650076 | + |
| chr7H | 8 | 244651074 | 244650741 | + |
| chr7H | 9 | 244651289 | 244651173 | + |
| chr7H | 10 | 244652881 | 244651667 | + |
| chr7H | 11 | 244653452 | 244653145 | + |
| chr7H | 12 | 244654280 | 244653589 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0 | 0 |
| morex | ETI | 0 | 0.317998 | 0 |
| morex | LEA | 0 | 0.00119037 | 0 |
| morex | EPI | 0.523741 | 0.21757 | 0 |
| morex | ROO | 0.489371 | 0 | 0 |
| morex | ROO2 | 0 | 0.0000000225648 | 0 |
| morex | NOD | 0 | 0 | 0 |
| morex | RAC | 0 | 0.0000000638184 | 0.00153188 |
| morex | INF1 | 0.366122 | 0.0513851 | 2.524 |
| morex | INF2 | 0 | 0.000000275999 | 0.000000134839 |
| morex | CAR5 | 0 | 0.185517 | 0 |
| morex | CAR15 | 0 | 0 | 0 |
| morex | LEM | 0 | 0.0965614 | 0.000000031458 |
| morex | LOD | 0 | 0.483553 | 0 |
| morex | PAL | 0.000000000276184 | 0 | 0 |
| morex | SEN | 0 | 0 | 0.197697 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g43400.4 | +2 | 0.0 | 1069 | 549/811 (68%) | protein|kinesin motor domain containing protein, expressed |
| TAIR PP10 | AT5G66310 @ ARAPORT AT5G66310.1 @ TAIR |
+2 | 0.0 | 395 | 306/866 (35%) | Symbols: | ATP binding microtubule motor family protein | chr5:26485786-26490304 REVERSE LENGTH=1063 |
| BRACH PP3 | Bradi3g42190.2.p | +2 | 0.0 | 1159 | 589/794 (74%) | pacid=32814335 transcript=Bradi3g42190.2 locus=Bradi3g42190 ID=Bradi3g42190.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3602 bp)
>BART1_0-u52598.008 3602 150831_barley_pseudomolecules TTTCCCTTCATTTTTTTTTCTACCAAAACCACTATAGTCCTCTCCCTTTCCCTTTCCCTT TCCCTTCCCCTCCTCCTCCTCCTATTCTTCTTCTCGGCACCAACAAGGAGGAGCAGAAGA GGAGAGGGGGCGACACAGTCTTGCCACTAGCTGCATTTCTCTCCTCTCGCATTGGTCGTC TTCTAGTTCCACCGTCCACCAGGGTGCGCAGACAGGGTGTTTGGCCCCAATTGCTCTACC AGACAGGTCTACGAGGAAGGAGCAAAAGAAGTTGCTCTATCAGTTGTCAGTGGAATCAAC TCAAGCATATTTGCGTATGGGCAAACAAGCAGCGGAAAGACTTACACAATGACTGGAATT ACTGAGTACAGTGTGATGGACATTTATGACTACATAGAGAAGCACCCTGAAAGAGAATTC ATGCTGAAATTCTCAGCAATAGAGATATATAATGAAGCTGTGAGGGATCTTCTGAGCCAT GATACGACACCTCTTAGACTGCTTGACGATCCTGAGAAAGGGACTACTGTTGAAAAGCTT ACCGAGGAAACATTGAGGGACAAGGACCATCTTAGGGATCTTCTTGGAATGTGTGAAGCT CAAAGAGAGATTGGAGAAACGGCTTTGAACGAAGCGAGTTCTAGGTCCCACCAAATACTC AGGCTGACAATCGAAAGTTCTGTTAAGCAGTATTTAGGAAGAAGCAAATCGAGCACCCTG GTGTCTTGTGTGGTACGGAATGTCTTTCTATATTCATGATTATTTGGTACTAGCATGTTT CCATCATCTCCGAGGTTCTTCTTCTGGACAGAACTTTGTTGACCTAGCTGGAAGTGAGCG AGCATCTCAGACTGCTTCAGCTGGTATGAGGTTAAAAGAAGGTAGTCATATTAATCGAAG TCTGCTAACACTGGGAAAGGTTGTTCGCCAACTCAGCAAGGGAAGAAATGGTCATATCCC TTATAGAGATTCAAAGCTGACACGCATATTACAGTCCTCTTTGGGAGGCAATGCAAGAAC AGCCATTGTCTGCACAATGAGCCCTGCACACACTCATATTGAGCAATCCAGGAACACACT TCTGTTTGCGACTTGCGCAAAGGAGGTAGTTACAAATGCACAGGTCAATGTAGTGATGTC TGACAAAGCACTACTGAAGCATCTACAGAGAGAGCTCGCAAGATTAGAAAATGAACTGAA ATTGCCGGAGTCAGCCTCCTGCACTAGTCATGCTGAAGCTTTAAGAGAGAAGGATGCACA GATTAAAAAGCTGGAAAAACAGCTTAGGGAATTGATAGAAGAAAAGGACACCGTTCAGTC TCAACTTAACTGTTTACTGAGAAGTGATGGTGACGACCATGACAATGATCGTGCTGCAAA GCGATGGGATGTCCATAGTCGGTCCTCAGAGTCTCTTGCACGAAATGCATCGGAGGAAGC ACTTTCGGTTTCAGACACTTATGGAGGTTCTTATCAAGATCAAGGTCACGCAGTGTTTGA TGGATCATATGTCTTCAGTGCTGATCATGATGGCTTGTCATCCCCCAATAAACCAATGGA TCTTCCTCAGCAAACAAGGGTTCGGCAGCCAGTTTCACCTTGGCACCCTACTAGCAACTA TAGCTCTGATGGTGCGGAGTCATATAACATAAAGGAGGTAGCTTTCAGAACTGCATCTGA GGTATCCGAAGAACATTGTAGGGAAGTGCAATGTATAGAGATACATGAGCATAGAAGAAG CACAAGCCAGGAATTTAACGTATTACTCCATGAGGGCACTAAGCTCCACATACCTGAAGT AGAGGACATCTCTAGAGACGCAGTCCCGCAACCTGATGAAGTGCTAGAAGCAGGGAGCAT AACAGAAAAAATGGAAGATCATATGAAGATATACGCTAGCAAAGAGGAGCAGCAGGCCGA GATCATAGCAAATGCAGTAGAAGATCCTATTGAAGTGCATCAATGTGAATCTGATGACTT TGCACACAACTTTGTCAAACTGTACCCATGTGATTCTAACATTTCTCTGGACGTTGGCAA ACCTTACCCTCATGAATGTCTTACTGTAAAGAGGTGTATAACGAGCTCCAAGGATAGTGC ATTGGCTAGAAGTCAAAGCTGCAGGGCTAGCTTCATGATCATTCCAAATAGTTGGTTTGA TGATTCGGAAAACACCAGGCAGACACCACCTGATGAAATCTTCAGGTATCCTCCCAGAAG GCCTGATAAAGTCAGGAGAAGTCTGTACCAAGGAAATGATGATTGCCAAAACAATAACAC TTCAGTAGACCTCTCTGCTGATTCTGGAGAAGTAGTTTGTGATGAAGTAGTTAAGGACAC AGGTACCAGTGATGCAGTCAAGGACATGAGCACCAGTGCTGAAGTAGTCAAGGACATGAG TACCAATGATGAAGTAGTTAAGGCCATGAGCACCAGTGATGAAGTAGTCAAGGACATGAG CACCAGTGATGAAGTAGGCAAGGAGTCGAGTACCAGTGAAGCAGAACAAGAAGTTTGTAT GGGTGACATCAGTTGTGTCACAGAGCTGGAACAGAAGACAGCAAAACACCATGAGGACCA ACCCGAGGAACATGAGGCAGAGCAGACTGTTAGAGATGAGTGTACAGCAGTTAAAACTGT CAAAGATGTTGGCATAGACGCAGTCCCGAGTACCGCCGAGTCTCCTTCGTGCTGGCCTAT TGATTTTGCAAATAGGCAGCGGGAGATCATCGAGTTGTGGCACGACTGCAACGTGTCCCT AGTACACAGGACCTACTTCTTCCTCCTCTTCAAGGGAGATGCTGCAGATAGCGTCTACAT GGAAGTGGAGCACAGGAGACTGTCCTTCATCCTCAGCTCGTTCAGCACCAACTCCGCAGG AGGCGAGCTTAACTCCGCAATCGCGTCCAGCTTGAAGAATCTGAAACGTGAGAGGGACAT GTTCTACAAGCAGATGCTCAAGAAGCTCGCCAACGGGGACAAGGAGGGCATCTACACCAG ATGGGGGATCGATCTGGGCTCCAAACAGCGGCGGCTTCAGCTATCTCGCCTCGTATGGAC GCGGGCTGACATGGAGCATGTCCGGGAGAGCGCCTCGCTGGTGGCGAGGCTGATCGACCT GGTTGAGCCAGGGCAGGCTCTCAAGGAGATGTTCAGCCTCAACTTCACACTGGCTCCCAG AACCGAACGGCGGTCTTTCAGCCTGCTACTAGGCGCGTGATCTTTGACGTACGAAGGTAG AAGGGTTTGATTTACCTAGTAAGTACAAGGAGGTTGACTTAACAGGAGAAGAGGACTATG CTGCGTATCATCGATTGGTTTCACGCATGTGTCTCTGCCTTGTTTTTGCTCGTTGTGTGC GTTTGAAAGAATTGTGTGCGCGTGCGTGTGTGATATTTCTGTGTGCAGTCTCACAAAAGT GAATCAATCAGACAGTACAGCTCTCCCTACCTTGCGTCGTATGTTCGTTTGTAAGAGTTT GTTCGTCAACCAAAATTTTGGAAGCCATGCGTGGGAGCATCGCACCATCCGGAATTTCCT ATTTGCCCCACTTTGCATGGGCCGGCCTAGTTTTGCCTGGTTTTGTAAACCTTTTAGGAG GC
Protein Sequence (826 aa)
>BART1_0-u52598.008 826 150831_barley_pseudomolecules MSFYIHDYLVLACFHHLRGSSSGQNFVDLAGSERASQTASAGMRLKEGSHINRSLLTLGK VVRQLSKGRNGHIPYRDSKLTRILQSSLGGNARTAIVCTMSPAHTHIEQSRNTLLFATCA KEVVTNAQVNVVMSDKALLKHLQRELARLENELKLPESASCTSHAEALREKDAQIKKLEK QLRELIEEKDTVQSQLNCLLRSDGDDHDNDRAAKRWDVHSRSSESLARNASEEALSVSDT YGGSYQDQGHAVFDGSYVFSADHDGLSSPNKPMDLPQQTRVRQPVSPWHPTSNYSSDGAE SYNIKEVAFRTASEVSEEHCREVQCIEIHEHRRSTSQEFNVLLHEGTKLHIPEVEDISRD AVPQPDEVLEAGSITEKMEDHMKIYASKEEQQAEIIANAVEDPIEVHQCESDDFAHNFVK LYPCDSNISLDVGKPYPHECLTVKRCITSSKDSALARSQSCRASFMIIPNSWFDDSENTR QTPPDEIFRYPPRRPDKVRRSLYQGNDDCQNNNTSVDLSADSGEVVCDEVVKDTGTSDAV KDMSTSAEVVKDMSTNDEVVKAMSTSDEVVKDMSTSDEVGKESSTSEAEQEVCMGDISCV TELEQKTAKHHEDQPEEHEAEQTVRDECTAVKTVKDVGIDAVPSTAESPSCWPIDFANRQ REIIELWHDCNVSLVHRTYFFLLFKGDAADSVYMEVEHRRLSFILSSFSTNSAGGELNSA IASSLKNLKRERDMFYKQMLKKLANGDKEGIYTRWGIDLGSKQRRLQLSRLVWTRADMEH VRESASLVARLIDLVEPGQALKEMFSLNFTLAPRTERRSFSLLLGA