- Transcript BART1_0-u52598.007
- Transcript IDBART1_0-u52598.007
- Gene IDBART1_0-u52598
Barley RTD
Exon Structure of BART1_0-u52598.007
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 244648196 | 244647984 | + |
| chr7H | 2 | 244649011 | 244648793 | + |
| chr7H | 3 | 244649246 | 244649157 | + |
| chr7H | 4 | 244649462 | 244649354 | + |
| chr7H | 5 | 244649654 | 244649541 | + |
| chr7H | 6 | 244649826 | 244649745 | + |
| chr7H | 7 | 244649975 | 244649908 | + |
| chr7H | 8 | 244650141 | 244650076 | + |
| chr7H | 9 | 244650345 | 244650221 | + |
| chr7H | 10 | 244651074 | 244650741 | + |
| chr7H | 11 | 244651289 | 244651173 | + |
| chr7H | 12 | 244652881 | 244651667 | + |
| chr7H | 13 | 244653452 | 244653142 | + |
| chr7H | 14 | 244654286 | 244653589 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.000000000375848 | 5.07262 | 2.71976 |
| morex | ETI | 0.0000012629 | 0.52391 | 0.0641442 |
| morex | LEA | 1.35701 | 0.615956 | 0 |
| morex | EPI | 0 | 0.501787 | 0.306396 |
| morex | ROO | 0 | 1.24103 | 0.450923 |
| morex | ROO2 | 0 | 0.602836 | 0.147337 |
| morex | NOD | 6.37868 | 3.65273 | 1.31733 |
| morex | RAC | 7.17164 | 7.65664 | 4.2447 |
| morex | INF1 | 6.66569 | 11.8207 | 6.11566 |
| morex | INF2 | 14.47 | 22.8749 | 16.9052 |
| morex | CAR5 | 1.12271 | 1.77083 | 0.696581 |
| morex | CAR15 | 0.0790135 | 1.00709 | 0 |
| morex | LEM | 3.04959 | 2.74178 | 0.000592452 |
| morex | LOD | 2.89019 | 0.162972 | 1.04392 |
| morex | PAL | 2.14431 | 1.75471 | 4.16831 |
| morex | SEN | 0.00000116426 | 0 | 0.0000000242747 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g43400.4 | +2 | 0.0 | 1269 | 644/912 (71%) | protein|kinesin motor domain containing protein, expressed |
| TAIR PP10 | AT5G66310 @ ARAPORT AT5G66310.1 @ TAIR |
+2 | 0.0 | 556 | 384/978 (39%) | Symbols: | ATP binding microtubule motor family protein | chr5:26485786-26490304 REVERSE LENGTH=1063 |
| BRACH PP3 | Bradi3g42190.1.p | +2 | 0.0 | 1373 | 692/906 (76%) | pacid=32814334 transcript=Bradi3g42190.1 locus=Bradi3g42190 ID=Bradi3g42190.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3761 bp)
>BART1_0-u52598.007 3761 150831_barley_pseudomolecules CTTTTCCCTTCATTTTTTTTTCTACCAAAACCACTATAGTCCTCTCCCTTTCCCTTTCCC TTTCCCTTCCCCTCCTCCTCCTCCTATTCTTCTTCTCGGCACCAACAAGGAGGAGCAGAA GAGGAGAGGGGGCGACACAGTCTTGCCACTAGCTGCATTTCTCTCCTCTCGCATTGGTCG TCTTCTAGTTCCACCGTCCACCAGGGTGCGCAGGGCTGAGAAGGGCGATGGGGGCGGGGG AGGAGGATGCGGCGGCGGCATGGGAGAAGGTGGAGGCCAAGGAGGAGAGGATCATGGTGT CCGTGCGGGTGCGGCCCCTGAACGGCAGGGAGTCCGGCGACAGCTCCGACTGGGAGTGCA TTAGCCCCACCACCGTCATGTTCCGGAGTACCGTTCCTGACCGCGCCATGTTCCCCACCG CCTACACCTATGACAGGGTGTTTGGCCCCAATTGCTCTACCAGACAGGTCTACGAGGAAG GAGCAAAAGAAGTTGCTCTATCAGTTGTCAGTGGAATCAACTCAAGCATATTTGCGTATG GGCAAACAAGCAGCGGAAAGACTTACACAATGACTGGAATTACTGAGTACAGTGTGATGG ACATTTATGACTACATAGAGAAGGTGTGCGTCACCCTGAAAGAGAATTCATGCTGAAATT CTCAGCAATAGAGATATATAATGAAGCTGTGAGGGATCTTCTGAGCCATGATACGACACC TCTTAGACTGCTTGACGATCCTGAGAAAGGGACTACTGTTGAAAAGCTTACCGAGGAAAC ATTGAGGGACAAGGACCATCTTAGGGATCTTCTTGGAATGTGTGAAGCTCAAAGAGAGAT TGGAGAAACGGCTTTGAACGAAGCGAGTTCTAGGTCCCACCAAATACTCAGGCTGACAAT CGAAAGTTCTGTTAAGCAGTATTTAGGAAGAAGCAAATCGAGCACCCTGGTGTCTTGTGT GAACTTTGTTGACCTAGCTGGAAGTGAGCGAGCATCTCAGACTGCTTCAGCTGGTATGAG GTTAAAAGAAGGTAGTCATATTAATCGAAGTCTGCTAACACTGGGAAAGGTTGTTCGCCA ACTCAGCAAGGGAAGAAATGGTCATATCCCTTATAGAGATTCAAAGCTGACACGCATATT ACAGTCCTCTTTGGGAGGCAATGCAAGAACAGCCATTGTCTGCACAATGAGCCCTGCACA CACTCATATTGAGCAATCCAGGAACACACTTCTGTTTGCGACTTGCGCAAAGGAGGTAGT TACAAATGCACAGGTCAATGTAGTGATGTCTGACAAAGCACTACTGAAGCATCTACAGAG AGAGCTCGCAAGATTAGAAAATGAACTGAAATTGCCGGAGTCAGCCTCCTGCACTAGTCA TGCTGAAGCTTTAAGAGAGAAGGATGCACAGATTAAAAAGCTGGAAAAACAGCTTAGGGA ATTGATAGAAGAAAAGGACACCGTTCAGTCTCAACTTAACTGTTTACTGAGAAGTGATGG TGACGACCATGACAATGATCGTGCTGCAAAGCGATGGGATGTCCATAGTCGGTCCTCAGA GTCTCTTGCACGAAATGCATCGGAGGAAGCACTTTCGGTTTCAGACACTTATGGAGGTTC TTATCAAGATCAAGGTCACGCAGTGTTTGATGGATCATATGTCTTCAGTGCTGATCATGA TGGCTTGTCATCCCCCAATAAACCAATGGATCTTCCTCAGCAAACAAGGGTTCGGCAGCC AGTTTCACCTTGGCACCCTACTAGCAACTATAGCTCTGATGGTGCGGAGTCATATAACAT AAAGGAGGTAGCTTTCAGAACTGCATCTGAGGTATCCGAAGAACATTGTAGGGAAGTGCA ATGTATAGAGATACATGAGCATAGAAGAAGCACAAGCCAGGAATTTAACGTATTACTCCA TGAGGGCACTAAGCTCCACATACCTGAAGTAGAGGACATCTCTAGAGACGCAGTCCCGCA ACCTGATGAAGTGCTAGAAGCAGGGAGCATAACAGAAAAAATGGAAGATCATATGAAGAT ATACGCTAGCAAAGAGGAGCAGCAGGCCGAGATCATAGCAAATGCAGTAGAAGATCCTAT TGAAGTGCATCAATGTGAATCTGATGACTTTGCACACAACTTTGTCAAACTGTACCCATG TGATTCTAACATTTCTCTGGACGTTGGCAAACCTTACCCTCATGAATGTCTTACTGTAAA GAGGTGTATAACGAGCTCCAAGGATAGTGCATTGGCTAGAAGTCAAAGCTGCAGGGCTAG CTTCATGATCATTCCAAATAGTTGGTTTGATGATTCGGAAAACACCAGGCAGACACCACC TGATGAAATCTTCAGGTATCCTCCCAGAAGGCCTGATAAAGTCAGGAGAAGTCTGTACCA AGGAAATGATGATTGCCAAAACAATAACACTTCAGTAGACCTCTCTGCTGATTCTGGAGA AGTAGTTTGTGATGAAGTAGTTAAGGACACAGGTACCAGTGATGCAGTCAAGGACATGAG CACCAGTGCTGAAGTAGTCAAGGACATGAGTACCAATGATGAAGTAGTTAAGGCCATGAG CACCAGTGATGAAGTAGTCAAGGACATGAGCACCAGTGATGAAGTAGGCAAGGAGTCGAG TACCAGTGAAGCAGAACAAGAAGTTTGTATGGGTGACATCAGTTGTGTCACAGAGCTGGA ACAGAAGACAGCAAAACACCATGAGGACCAACCCGAGGAACATGAGGCAGAGCAGCAGAC TGTTAGAGATGAGTGTACAGCAGTTAAAACTGTCAAAGATGTTGGCATAGACGCAGTCCC GAGTACCGCCGAGTCTCCTTCGTGCTGGCCTATTGATTTTGCAAATAGGCAGCGGGAGAT CATCGAGTTGTGGCACGACTGCAACGTGTCCCTAGTACACAGGACCTACTTCTTCCTCCT CTTCAAGGGAGATGCTGCAGATAGCGTCTACATGGAAGTGGAGCACAGGAGACTGTCCTT CATCCTCAGCTCGTTCAGCACCAACTCCGCAGGAGGCGAGCTTAACTCCGCAATCGCGTC CAGCTTGAAGAATCTGAAACGTGAGAGGGACATGTTCTACAAGCAGATGCTCAAGAAGCT CGCCAACGGGGACAAGGAGGGCATCTACACCAGATGGGGGATCGATCTGGGCTCCAAACA GCGGCGGCTTCAGCTATCTCGCCTCGTATGGACGCGGGCTGACATGGAGCATGTCCGGGA GAGCGCCTCGCTGGTGGCGAGGCTGATCGACCTGGTTGAGCCAGGGCAGGCTCTCAAGGA GATGTTCAGCCTCAACTTCACACTGGCTCCCAGAACCGAACGGCGGTCTTTCAGCCTGCT ACTAGGCGCGTGATCTTTGACGTACGAAGGTAGAAGGGTTTGATTTACCTAGTAAGTACA AGGAGGTTGACTTAACAGGAGAAGAGGACTATGCTGCGTATCATCGATTGGTTTCACGCA TGTGTCTCTGCCTTGTTTTTGCTCGTTGTGTGCGTTTGAAAGAATTGTGTGCGCGTGCGT GTGTGATATTTCTGTGTGCAGTCTCACAAAAGTGAATCAATCAGACAGTACAGCTCTCCC TACCTTGCGTCGTATGTTCGTTTGTAAGAGTTTGTTCGTCAACCAAAATTTTGGAAGCCA TGCGTGGGAGCATCGCACCATCCGGAATTTCCTATTTGCCCCACTTTGCATGGGCCGGCC TAGTTTTGCCTGGTTTTGTAAACCTTTTAGGAGGCTCTTTG
Protein Sequence (907 aa)
>BART1_0-u52598.007 907 150831_barley_pseudomolecules MLKFSAIEIYNEAVRDLLSHDTTPLRLLDDPEKGTTVEKLTEETLRDKDHLRDLLGMCEA QREIGETALNEASSRSHQILRLTIESSVKQYLGRSKSSTLVSCVNFVDLAGSERASQTAS AGMRLKEGSHINRSLLTLGKVVRQLSKGRNGHIPYRDSKLTRILQSSLGGNARTAIVCTM SPAHTHIEQSRNTLLFATCAKEVVTNAQVNVVMSDKALLKHLQRELARLENELKLPESAS CTSHAEALREKDAQIKKLEKQLRELIEEKDTVQSQLNCLLRSDGDDHDNDRAAKRWDVHS RSSESLARNASEEALSVSDTYGGSYQDQGHAVFDGSYVFSADHDGLSSPNKPMDLPQQTR VRQPVSPWHPTSNYSSDGAESYNIKEVAFRTASEVSEEHCREVQCIEIHEHRRSTSQEFN VLLHEGTKLHIPEVEDISRDAVPQPDEVLEAGSITEKMEDHMKIYASKEEQQAEIIANAV EDPIEVHQCESDDFAHNFVKLYPCDSNISLDVGKPYPHECLTVKRCITSSKDSALARSQS CRASFMIIPNSWFDDSENTRQTPPDEIFRYPPRRPDKVRRSLYQGNDDCQNNNTSVDLSA DSGEVVCDEVVKDTGTSDAVKDMSTSAEVVKDMSTNDEVVKAMSTSDEVVKDMSTSDEVG KESSTSEAEQEVCMGDISCVTELEQKTAKHHEDQPEEHEAEQQTVRDECTAVKTVKDVGI DAVPSTAESPSCWPIDFANRQREIIELWHDCNVSLVHRTYFFLLFKGDAADSVYMEVEHR RLSFILSSFSTNSAGGELNSAIASSLKNLKRERDMFYKQMLKKLANGDKEGIYTRWGIDL GSKQRRLQLSRLVWTRADMEHVRESASLVARLIDLVEPGQALKEMFSLNFTLAPRTERRS FSLLLGA