- Transcript BART1_0-u52598.006
- Transcript IDBART1_0-u52598.006
- Gene IDBART1_0-u52598
Barley RTD
Exon Structure of BART1_0-u52598.006
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 244648196 | 244647984 | + |
| chr7H | 2 | 244649011 | 244648712 | + |
| chr7H | 3 | 244649246 | 244649157 | + |
| chr7H | 4 | 244649454 | 244649354 | + |
| chr7H | 5 | 244649654 | 244649541 | + |
| chr7H | 6 | 244649826 | 244649745 | + |
| chr7H | 7 | 244649975 | 244649908 | + |
| chr7H | 8 | 244650345 | 244650076 | + |
| chr7H | 9 | 244651074 | 244650741 | + |
| chr7H | 10 | 244652881 | 244651173 | + |
| chr7H | 11 | 244653452 | 244653142 | + |
| chr7H | 12 | 244654213 | 244653589 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.473724 | 2.76518 | 2.9008 |
| morex | ETI | 4.8614 | 0.979397 | 2.64334 |
| morex | LEA | 3.32029 | 0.905731 | 1.63779 |
| morex | EPI | 0.498955 | 0.627365 | 0.979466 |
| morex | ROO | 0 | 0.950462 | 0.0119244 |
| morex | ROO2 | 0.547603 | 1.21972 | 0.676541 |
| morex | NOD | 3.86268 | 4.37367 | 0.148556 |
| morex | RAC | 6.53745 | 4.18549 | 5.53575 |
| morex | INF1 | 0.271154 | 2.69983 | 2.4187 |
| morex | INF2 | 6.57866 | 8.91692 | 7.06082 |
| morex | CAR5 | 3.41324 | 1.09018 | 5.03494 |
| morex | CAR15 | 0.500698 | 0 | 0.381252 |
| morex | LEM | 4.79831 | 2.25147 | 3.16368 |
| morex | LOD | 2.43129 | 3.97528 | 2.64269 |
| morex | PAL | 7.72305 | 5.97888 | 9.47439 |
| morex | SEN | 0 | 0.250276 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g43400.4 | +3 | 0.0 | 716 | 378/609 (62%) | protein|kinesin motor domain containing protein, expressed |
| TAIR PP10 | AT3G51150 @ ARAPORT AT3G51150.2 @ TAIR |
+3 | 3e-160 | 336 | 158/226 (70%) | Symbols: | ATP binding microtubule motor family protein | chr3:19002006-19006509 FORWARD LENGTH=1054 |
| BRACH PP3 | Bradi3g42190.1.p | +3 | 0.0 | 825 | 418/603 (69%) | pacid=32814334 transcript=Bradi3g42190.1 locus=Bradi3g42190 ID=Bradi3g42190.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (4217 bp)
>BART1_0-u52598.006 4217 150831_barley_pseudomolecules CTTTTCCCTTCATTTTTTTTTCTACCAAAACCACTATAGTCCTCTCCCTTTCCCTTTCCC TTTCCCTTCCCCTCCTCCTCCTCCTATTCTTCTTCTCGGCACCAACAAGGAGGAGCAGAA GAGGAGAGGGGGCGACACAGTCTTGCCACTAGCTGCATTTCTCTCCTCTCGCATTGGTCG TCTTCTAGTTCCACCGTCCACCAGGGTGCGCAGGGGAAGGGGGTGTTGGTCGGTGGTGAC GGGTGCAGAGGAAGAGGGGCGATTTTGATACTGTTCTTGGGTGGAGGGGTGCAGGGCTGA GAAGGGCGATGGGGGCGGGGGAGGAGGATGCGGCGGCGGCATGGGAGAAGGTGGAGGCCA AGGAGGAGAGGATCATGGTGTCCGTGCGGGTGCGGCCCCTGAACGGCAGGGAGTCCGGCG ACAGCTCCGACTGGGAGTGCATTAGCCCCACCACCGTCATGTTCCGGAGTACCGTTCCTG ACCGCGCCATGTTCCCCACCGCCTACACCTATGACAGGGTGTTTGGCCCCAATTGCTCTA CCAGACAGGTCTACGAGGAAGGAGCAAAAGAAGTTGCTCTATCAGTTGTCAGTGGAATCA ACTCAAGCATATTTGCGTATGGGCAAACAAGCAGCGGAAAGACTTACACAATGACTGGAA TTACTGAGTACAGTGTGATGGACATTTATGACTACATAGAGAAGCACCCTGAAAGAGAAT TCATGCTGAAATTCTCAGCAATAGAGATATATAATGAAGCTGTGAGGGATCTTCTGAGCC ATGATACGACACCTCTTAGACTGCTTGACGATCCTGAGAAAGGGACTACTGTTGAAAAGC TTACCGAGGAAACATTGAGGGACAAGGACCATCTTAGGGATCTTCTTGGAATGTGTGAAG CTCAAAGAGAGATTGGAGAAACGGCTTTGAACGAAGCGAGTTCTAGGTCCCACCAAATAC TCAGGCTGACAATCGAAAGTTCTGTTAAGCAGTATTTAGGAAGAAGCAAATCGAGCACCC TGGTGTCTTGTGTGGTACGGAATGTCTTTCTATATTCATGATTATTTGGTACTAGCATGT TTCCATCATCTCCGAGGTTCTTCTTCTGGACAGAACTTTGTTGACCTAGCTGGAAGTGAG CGAGCATCTCAGACTGCTTCAGCTGGTATGAGGTTAAAAGAAGGTAGTCATATTAATCGA AGTCTGCTAACACTGGGAAAGGTTGTTCGCCAACTCAGCAAGGGAAGAAATGGTCATATC CCTTATAGAGATTCAAAGCTGACACGCATATTACAGTCCTCTTTGGGAGGCAATGCAAGA ACAGCCATTGTCTGCACAATGAGCCCTGCACACACTCATATTGAGCAATCCAGGAACACA CTTCTGTTTGCGACTTGCGCAAAGGAGGTAGTTACAAATGCACAGGTCAATGTAGTGATG TCTGACAAAGCACTACTGAAGCATCTACAGAGAGAGCTCGCAAGATTAGAAAATGAACTG AAATTGCCGGAGTCAGCCTCCTGCACTAGTCATGCTGAAGCTTTAAGAGAGAAGGATGCA CAGATTAAAAAGCTGGAAAAACAGCTTAGGGAATTGATAGAAGAAAAGGACACCGTTCAG TCTCAACTTAACTGTTTACTGAGAAGTGATGGTGACGACCATGACAATGATCGTGCTGCA AAGCGATGGGTACTATCTCTCTCAGGCTACTCATAGTGGGGGTATCATAGAGTACTATCA TGCATATAGTATCATGCAAAAGTGATAGTACTATTGTATGATACTACCTCCATAATGCAT AGTATCATAAACTAGTATCATAGATGATCTCATTTATTGACATGCATGACACATAGTAGC ATAGCATTTAACATGATACGATATCTACCTATGTTACTCTAACCTTCTCTCTCTTCTTTA ATTGTCTGTCACATCAGCATGTTTGCTAGTCCCAAGTACATGATACTACCTAAGTTACTC TCATTATGACCAGCCTCATACACACGGACTTAATTTTTTACATTATTATAATGTGTGACA TTTAATGATCTGTTGTCCTTTGATAGGATGTCCATAGTCGGTCCTCAGAGTCTCTTGCAC GAAATGCATCGGAGGAAGCACTTTCGGTTTCAGACACTTATGGAGGTTCTTATCAAGATC AAGGTCACGCAGTGTTTGATGGATCATATGTCTTCAGTGCTGATCATGATGGCTTGTCAT CCCCCAATAAACCAATGGATCTTCCTCAGCAAACAAGGGTTCGGCAGCCAGTTTCACCTT GGCACCCTACTAGCAACTATAGCTCTGATGGTGCGGAGTCATATAACATAAAGGAGGTAG CTTTCAGAACTGCATCTGAGGTATCCGAAGAACATTGTAGGGAAGTGCAATGTATAGAGA TACATGAGCATAGAAGAAGCACAAGCCAGGAATTTAACGTATTACTCCATGAGGGCACTA AGCTCCACATACCTGAAGTAGAGGACATCTCTAGAGACGCAGTCCCGCAACCTGATGAAG TGCTAGAAGCAGGGAGCATAACAGAAAAAATGGAAGATCATATGAAGATATACGCTAGCA AAGAGGAGCAGCAGGCCGAGATCATAGCAAATGCAGTAGAAGATCCTATTGAAGTGCATC AATGTGAATCTGATGACTTTGCACACAACTTTGTCAAACTGTACCCATGTGATTCTAACA TTTCTCTGGACGTTGGCAAACCTTACCCTCATGAATGTCTTACTGTAAAGAGGTGTATAA CGAGCTCCAAGGATAGTGCATTGGCTAGAAGTCAAAGCTGCAGGGCTAGCTTCATGATCA TTCCAAATAGTTGGTTTGATGATTCGGAAAACACCAGGCAGACACCACCTGATGAAATCT TCAGGTATCCTCCCAGAAGGCCTGATAAAGTCAGGAGAAGTCTGTACCAAGGAAATGATG ATTGCCAAAACAATAACACTTCAGTAGACCTCTCTGCTGATTCTGGAGAAGTAGTTTGTG ATGAAGTAGTTAAGGACACAGGTACCAGTGATGCAGTCAAGGACATGAGCACCAGTGCTG AAGTAGTCAAGGACATGAGTACCAATGATGAAGTAGTTAAGGCCATGAGCACCAGTGATG AAGTAGTCAAGGACATGAGCACCAGTGATGAAGTAGGCAAGGAGTCGAGTACCAGTGAAG CAGAACAAGAAGTTTGTATGGGTGACATCAGTTGTGTCACAGAGCTGGAACAGAAGACAG CAAAACACCATGAGGACCAACCCGAGGAACATGAGGCAGAGCAGCAGACTGTTAGAGATG AGTGTACAGCAGTTAAAACTGTCAAAGATGTTGGCATAGACGCAGTCCCGAGTACCGCCG AGTCTCCTTCGTGCTGGCCTATTGATTTTGCAAATAGGCAGCGGGAGATCATCGAGTTGT GGCACGACTGCAACGTGTCCCTAGTACACAGGACCTACTTCTTCCTCCTCTTCAAGGGAG ATGCTGCAGATAGCGTCTACATGGAAGTGGAGCACAGGAGACTGTCCTTCATCCTCAGCT CGTTCAGCACCAACTCCGCAGGAGGCGAGCTTAACTCCGCAATCGCGTCCAGCTTGAAGA ATCTGAAACGTGAGAGGGACATGTTCTACAAGCAGATGCTCAAGAAGCTCGCCAACGGGG ACAAGGAGGGCATCTACACCAGATGGGGGATCGATCTGGGCTCCAAACAGCGGCGGCTTC AGCTATCTCGCCTCGTATGGACGCGGGCTGACATGGAGCATGTCCGGGAGAGCGCCTCGC TGGTGGCGAGGCTGATCGACCTGGTTGAGCCAGGGCAGGCTCTCAAGGAGATGTTCAGCC TCAACTTCACACTGGCTCCCAGAACCGAACGGCGGTCTTTCAGCCTGCTACTAGGCGCGT GATCTTTGACGTACGAAGGTAGAAGGGTTTGATTTACCTAGTAAGTACAAGGAGGTTGAC TTAACAGGAGAAGAGGACTATGCTGCGTATCATCGATTGGTTTCACGCATGTGTCTCTGC CTTGTTTTTGCTCGTTGTGTGCGTTTGAAAGAATTGTGTGCGCGTGCGTGTGTGATATTT CTGTGTGCAGTCTCACAAAAGTGAATCAATCAGACAGTACAGCTCTCCCTACCTTGCGTC GTATGTTCGTTTGTAAGAGTTTGTTCGTCAACCAAAATTTTGGAAGCCATGCGTGGGAGC ATCGCACCATCCGGAAT
Protein Sequence (555 aa)
>BART1_0-u52598.006 555 150831_barley_pseudomolecules MDLPQQTRVRQPVSPWHPTSNYSSDGAESYNIKEVAFRTASEVSEEHCREVQCIEIHEHR RSTSQEFNVLLHEGTKLHIPEVEDISRDAVPQPDEVLEAGSITEKMEDHMKIYASKEEQQ AEIIANAVEDPIEVHQCESDDFAHNFVKLYPCDSNISLDVGKPYPHECLTVKRCITSSKD SALARSQSCRASFMIIPNSWFDDSENTRQTPPDEIFRYPPRRPDKVRRSLYQGNDDCQNN NTSVDLSADSGEVVCDEVVKDTGTSDAVKDMSTSAEVVKDMSTNDEVVKAMSTSDEVVKD MSTSDEVGKESSTSEAEQEVCMGDISCVTELEQKTAKHHEDQPEEHEAEQQTVRDECTAV KTVKDVGIDAVPSTAESPSCWPIDFANRQREIIELWHDCNVSLVHRTYFFLLFKGDAADS VYMEVEHRRLSFILSSFSTNSAGGELNSAIASSLKNLKRERDMFYKQMLKKLANGDKEGI YTRWGIDLGSKQRRLQLSRLVWTRADMEHVRESASLVARLIDLVEPGQALKEMFSLNFTL APRTERRSFSLLLGA