- Transcript BART1_0-u52598.005
- Transcript IDBART1_0-u52598.005
- Gene IDBART1_0-u52598
Barley RTD
Exon Structure of BART1_0-u52598.005
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 244648196 | 244647984 | + |
| chr7H | 2 | 244649246 | 244648712 | + |
| chr7H | 3 | 244649454 | 244649354 | + |
| chr7H | 4 | 244649654 | 244649541 | + |
| chr7H | 5 | 244649826 | 244649745 | + |
| chr7H | 6 | 244649975 | 244649908 | + |
| chr7H | 7 | 244651074 | 244650076 | + |
| chr7H | 8 | 244652881 | 244651173 | + |
| chr7H | 9 | 244653452 | 244653145 | + |
| chr7H | 10 | 244654235 | 244653589 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0.627327 | 0.211946 |
| morex | ETI | 0.473952 | 0.309702 | 0.37399 |
| morex | LEA | 0 | 0.168415 | 0 |
| morex | EPI | 0.557413 | 0.286067 | 0.187149 |
| morex | ROO | 0 | 0 | 0 |
| morex | ROO2 | 0.0957751 | 0.0556726 | 0.116576 |
| morex | NOD | 0 | 0.431716 | 0 |
| morex | RAC | 1.15493 | 2.71944 | 1.76095 |
| morex | INF1 | 1.41789 | 0.599621 | 0.275869 |
| morex | INF2 | 1.83978 | 1.24027 | 1.11916 |
| morex | CAR5 | 0.387063 | 0.311506 | 0.264172 |
| morex | CAR15 | 0 | 0 | 0.139136 |
| morex | LEM | 0.368336 | 0.609007 | 0.538419 |
| morex | LOD | 0.373746 | 0 | 0.139909 |
| morex | PAL | 0.320701 | 2.07517 | 0.981685 |
| morex | SEN | 0.192882 | 0.446036 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g43400.4 | +3 | 0.0 | 719 | 377/608 (62%) | protein|kinesin motor domain containing protein, expressed |
| TAIR PP10 | AT3G51150 @ ARAPORT AT3G51150.1 @ TAIR |
+1 | 1e-89 | 280 | 130/174 (75%) | Symbols: | ATP binding microtubule motor family protein | chr3:19002006-19006509 FORWARD LENGTH=1052 |
| BRACH PP3 | Bradi3g42190.2.p | +3 | 0.0 | 821 | 418/602 (69%) | pacid=32814335 transcript=Bradi3g42190.2 locus=Bradi3g42190 ID=Bradi3g42190.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (4776 bp)
>BART1_0-u52598.005 4776 150831_barley_pseudomolecules CTTTTCCCTTCATTTTTTTTTCTACCAAAACCACTATAGTCCTCTCCCTTTCCCTTTCCC TTTCCCTTCCCCTCCTCCTCCTCCTATTCTTCTTCTCGGCACCAACAAGGAGGAGCAGAA GAGGAGAGGGGGCGACACAGTCTTGCCACTAGCTGCATTTCTCTCCTCTCGCATTGGTCG TCTTCTAGTTCCACCGTCCACCAGGGTGCGCAGGGGAAGGGGGTGTTGGTCGGTGGTGAC GGGTGCAGAGGAAGAGGGGCGATTTTGATACTGTTCTTGGGTGGAGGGGTGCAGGGCTGA GAAGGGCGATGGGGGCGGGGGAGGAGGATGCGGCGGCGGCATGGGAGAAGGTGGAGGCCA AGGAGGAGAGGATCATGGTGTCCGTGCGGGTGCGGCCCCTGAACGGCAGGGAGTCCGGCG ACAGCTCCGACTGGGAGTGCATTAGCCCCACCACCGTCATGTTCCGGAGTACCGTTCCTG ACCGCGCCATGTTCCCCACCGCCTACACCTATGGTAAGCACAAGCACCGGCAGAGCTCAA TTTTGCAAATAATGCATGGCAATGTTGGCCACAATTGCTGTTCTTGATGTTGAAACCTCG CAGGGATTTCATTCGGCAGTCGATTTCTCAGTTTGTTCTTCTTTCTTGTCCTTTTCAGAC AGGGTGTTTGGCCCCAATTGCTCTACCAGACAGGTCTACGAGGAAGGAGCAAAAGAAGTT GCTCTATCAGTTGTCAGTGGAATCAACTCAAGCATATTTGCGTATGGGCAAACAAGCAGC GGAAAGACTTACACAATGACTGGAATTACTGAGTACAGTGTGATGGACATTTATGACTAC ATAGAGAAGCACCCTGAAAGAGAATTCATGCTGAAATTCTCAGCAATAGAGATATATAAT GAAGCTGTGAGGGATCTTCTGAGCCATGATACGACACCTCTTAGACTGCTTGACGATCCT GAGAAAGGGACTACTGTTGAAAAGCTTACCGAGGAAACATTGAGGGACAAGGACCATCTT AGGGATCTTCTTGGAATGTGTGAAGCTCAAAGAGAGATTGGAGAAACGGCTTTGAACGAA GCGAGTTCTAGGTCCCACCAAATACTCAGGCTGACAATCGAAAGTTCTGTTAAGCAGTAT TTAGGAAGAAGCAAATCGAGCACCCTGGTGTCTTGTGTGGTACGGAATGTCTTTCTATAT TCATGATTATTTGGTACTAGCATGTTTCCATCATCTCCGAGGTTCTTCTTCTGGACAGAA CTTTGTTGACCTAGCTGGAAGTGAGCGAGCATCTCAGACTGCTTCAGCTGGTATGAGGTT AAAAGAAGGTAGTCATATTAATCGAAGTCTGCTAACACTGGGAAAGGTTGTTCGCCAACT CAGGTTTGTTTGGTTTATTTTCTTCTTGCAAGAACTTGTAATCCCAGTGGTTTAGTTCTT ATGTAAATAGAGTCCGGTCATAAAAATTATCAGAGTTTGCACATATATTTCCTCTTTCTT TTGTATTCACTAGATAAAGTTATTTTGAATTCCATTTTCTGTTACAGTTTGACGTTTCTC CTTTCTGCTCATTTTGTCTGCTCTTTGAAAAAATGACCATTACAGCTGTTTGCACATATA TTTCCTCTTTGTTTTGTATTCACTGTATACCTTTTCTCGACAAAGGGTAGTAAATAATTT TTCCGACAAAGGGTAAAAAAAGAAGACAAAGGGTAATATATTAACATGAAAATGATATCA ATCACACCTTAGTCTGAACTACTATGTTCCTCTTGCAGCAAGGGAAGAAATGGTCATATC CCTTATAGAGATTCAAAGCTGACACGCATATTACAGTCCTCTTTGGGAGGCAATGCAAGA ACAGCCATTGTCTGCACAATGAGCCCTGCACACACTCATATTGAGCAATCCAGGAACACA CTTCTGTTTGCGACTTGCGCAAAGGAGGTAGTTACAAATGCACAGGTCAATGTAGTGATG TCTGACAAAGCACTACTGAAGCATCTACAGAGAGAGCTCGCAAGATTAGAAAATGAACTG AAATTGCCGGAGTCAGCCTCCTGCACTAGTCATGCTGAAGCTTTAAGAGAGAAGGATGCA CAGATTAAAAAGCTGGAAAAACAGCTTAGGGAATTGATAGAAGAAAAGGACACCGTTCAG TCTCAACTTAACTGTTTACTGAGAAGTGATGGTGACGACCATGACAATGATCGTGCTGCA AAGCGATGGGTACTATCTCTCTCAGGCTACTCATAGTGGGGGTATCATAGAGTACTATCA TGCATATAGTATCATGCAAAAGTGATAGTACTATTGTATGATACTACCTCCATAATGCAT AGTATCATAAACTAGTATCATAGATGATCTCATTTATTGACATGCATGACACATAGTAGC ATAGCATTTAACATGATACGATATCTACCTATGTTACTCTAACCTTCTCTCTCTTCTTTA ATTGTCTGTCACATCAGCATGTTTGCTAGTCCCAAGTACATGATACTACCTAAGTTACTC TCATTATGACCAGCCTCATACACACGGACTTAATTTTTTACATTATTATAATGTGTGACA TTTAATGATCTGTTGTCCTTTGATAGGATGTCCATAGTCGGTCCTCAGAGTCTCTTGCAC GAAATGCATCGGAGGAAGCACTTTCGGTTTCAGACACTTATGGAGGTTCTTATCAAGATC AAGGTCACGCAGTGTTTGATGGATCATATGTCTTCAGTGCTGATCATGATGGCTTGTCAT CCCCCAATAAACCAATGGATCTTCCTCAGCAAACAAGGGTTCGGCAGCCAGTTTCACCTT GGCACCCTACTAGCAACTATAGCTCTGATGGTGCGGAGTCATATAACATAAAGGAGGTAG CTTTCAGAACTGCATCTGAGGTATCCGAAGAACATTGTAGGGAAGTGCAATGTATAGAGA TACATGAGCATAGAAGAAGCACAAGCCAGGAATTTAACGTATTACTCCATGAGGGCACTA AGCTCCACATACCTGAAGTAGAGGACATCTCTAGAGACGCAGTCCCGCAACCTGATGAAG TGCTAGAAGCAGGGAGCATAACAGAAAAAATGGAAGATCATATGAAGATATACGCTAGCA AAGAGGAGCAGCAGGCCGAGATCATAGCAAATGCAGTAGAAGATCCTATTGAAGTGCATC AATGTGAATCTGATGACTTTGCACACAACTTTGTCAAACTGTACCCATGTGATTCTAACA TTTCTCTGGACGTTGGCAAACCTTACCCTCATGAATGTCTTACTGTAAAGAGGTGTATAA CGAGCTCCAAGGATAGTGCATTGGCTAGAAGTCAAAGCTGCAGGGCTAGCTTCATGATCA TTCCAAATAGTTGGTTTGATGATTCGGAAAACACCAGGCAGACACCACCTGATGAAATCT TCAGGTATCCTCCCAGAAGGCCTGATAAAGTCAGGAGAAGTCTGTACCAAGGAAATGATG ATTGCCAAAACAATAACACTTCAGTAGACCTCTCTGCTGATTCTGGAGAAGTAGTTTGTG ATGAAGTAGTTAAGGACACAGGTACCAGTGATGCAGTCAAGGACATGAGCACCAGTGCTG AAGTAGTCAAGGACATGAGTACCAATGATGAAGTAGTTAAGGCCATGAGCACCAGTGATG AAGTAGTCAAGGACATGAGCACCAGTGATGAAGTAGGCAAGGAGTCGAGTACCAGTGAAG CAGAACAAGAAGTTTGTATGGGTGACATCAGTTGTGTCACAGAGCTGGAACAGAAGACAG CAAAACACCATGAGGACCAACCCGAGGAACATGAGGCAGAGCAGACTGTTAGAGATGAGT GTACAGCAGTTAAAACTGTCAAAGATGTTGGCATAGACGCAGTCCCGAGTACCGCCGAGT CTCCTTCGTGCTGGCCTATTGATTTTGCAAATAGGCAGCGGGAGATCATCGAGTTGTGGC ACGACTGCAACGTGTCCCTAGTACACAGGACCTACTTCTTCCTCCTCTTCAAGGGAGATG CTGCAGATAGCGTCTACATGGAAGTGGAGCACAGGAGACTGTCCTTCATCCTCAGCTCGT TCAGCACCAACTCCGCAGGAGGCGAGCTTAACTCCGCAATCGCGTCCAGCTTGAAGAATC TGAAACGTGAGAGGGACATGTTCTACAAGCAGATGCTCAAGAAGCTCGCCAACGGGGACA AGGAGGGCATCTACACCAGATGGGGGATCGATCTGGGCTCCAAACAGCGGCGGCTTCAGC TATCTCGCCTCGTATGGACGCGGGCTGACATGGAGCATGTCCGGGAGAGCGCCTCGCTGG TGGCGAGGCTGATCGACCTGGTTGAGCCAGGGCAGGCTCTCAAGGAGATGTTCAGCCTCA ACTTCACACTGGCTCCCAGAACCGAACGGCGGTCTTTCAGCCTGCTACTAGGCGCGTGAT CTTTGACGTACGAAGGTAGAAGGGTTTGATTTACCTAGTAAGTACAAGGAGGTTGACTTA ACAGGAGAAGAGGACTATGCTGCGTATCATCGATTGGTTTCACGCATGTGTCTCTGCCTT GTTTTTGCTCGTTGTGTGCGTTTGAAAGAATTGTGTGCGCGTGCGTGTGTGATATTTCTG TGTGCAGTCTCACAAAAGTGAATCAATCAGACAGTACAGCTCTCCCTACCTTGCGTCGTA TGTTCGTTTGTAAGAGTTTGTTCGTCAACCAAAATTTTGGAAGCCATGCGTGGGAGCATC GCACCATCCGGAATTTCCTATTTGCCCCACTTTGCA
Protein Sequence (554 aa)
>BART1_0-u52598.005 554 150831_barley_pseudomolecules MDLPQQTRVRQPVSPWHPTSNYSSDGAESYNIKEVAFRTASEVSEEHCREVQCIEIHEHR RSTSQEFNVLLHEGTKLHIPEVEDISRDAVPQPDEVLEAGSITEKMEDHMKIYASKEEQQ AEIIANAVEDPIEVHQCESDDFAHNFVKLYPCDSNISLDVGKPYPHECLTVKRCITSSKD SALARSQSCRASFMIIPNSWFDDSENTRQTPPDEIFRYPPRRPDKVRRSLYQGNDDCQNN NTSVDLSADSGEVVCDEVVKDTGTSDAVKDMSTSAEVVKDMSTNDEVVKAMSTSDEVVKD MSTSDEVGKESSTSEAEQEVCMGDISCVTELEQKTAKHHEDQPEEHEAEQTVRDECTAVK TVKDVGIDAVPSTAESPSCWPIDFANRQREIIELWHDCNVSLVHRTYFFLLFKGDAADSV YMEVEHRRLSFILSSFSTNSAGGELNSAIASSLKNLKRERDMFYKQMLKKLANGDKEGIY TRWGIDLGSKQRRLQLSRLVWTRADMEHVRESASLVARLIDLVEPGQALKEMFSLNFTLA PRTERRSFSLLLGA