- Transcript BART1_0-u52598.003
- Transcript IDBART1_0-u52598.003
- Gene IDBART1_0-u52598
Barley RTD
Exon Structure of BART1_0-u52598.003
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 244648196 | 244647902 | + |
| chr7H | 2 | 244649011 | 244648793 | + |
| chr7H | 3 | 244649246 | 244649157 | + |
| chr7H | 4 | 244649454 | 244649354 | + |
| chr7H | 5 | 244649654 | 244649541 | + |
| chr7H | 6 | 244649826 | 244649745 | + |
| chr7H | 7 | 244649975 | 244649908 | + |
| chr7H | 8 | 244650141 | 244650076 | + |
| chr7H | 9 | 244650345 | 244650221 | + |
| chr7H | 10 | 244651074 | 244650741 | + |
| chr7H | 11 | 244651289 | 244651173 | + |
| chr7H | 12 | 244652881 | 244651667 | + |
| chr7H | 13 | 244653452 | 244653148 | + |
| chr7H | 14 | 244654364 | 244653589 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0.00000000995499 | 0.000568899 |
| morex | ETI | 1.64479 | 0.26272 | 1.30358 |
| morex | LEA | 5.47422 | 0.000103047 | 0 |
| morex | EPI | 0 | 0 | 0.177483 |
| morex | ROO | 0.391249 | 0.267634 | 0.0000839569 |
| morex | ROO2 | 1.1771 | 1.25715 | 0.20508 |
| morex | NOD | 2.44525 | 0 | 0 |
| morex | RAC | 5.09492 | 3.5822 | 2.57754 |
| morex | INF1 | 9.59646 | 4.2187 | 9.97721 |
| morex | INF2 | 27.166 | 12.4053 | 16.8438 |
| morex | CAR5 | 0.802877 | 0.920057 | 2.91481 |
| morex | CAR15 | 0 | 0 | 0 |
| morex | LEM | 3.99234 | 1.94375 | 2.59004 |
| morex | LOD | 0.904738 | 3.08914 | 2.62115 |
| morex | PAL | 1.92135 | 3.2125 | 3.25117 |
| morex | SEN | 0 | 0 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g43400.3 | +1 | 0.0 | 1492 | 747/1021 (73%) | protein|kinesin motor domain containing protein, expressed |
| TAIR PP10 | AT5G66310 @ ARAPORT AT5G66310.1 @ TAIR |
+1 | 0.0 | 720 | 455/1088 (42%) | Symbols: | ATP binding microtubule motor family protein | chr5:26485786-26490304 REVERSE LENGTH=1063 |
| BRACH PP3 | Bradi3g42190.2.p | +1 | 0.0 | 1570 | 790/1016 (78%) | pacid=32814335 transcript=Bradi3g42190.2 locus=Bradi3g42190 ID=Bradi3g42190.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3907 bp)
>BART1_0-u52598.003 3907 150831_barley_pseudomolecules CTGTGATTGGCCGATGGGCCGTCCTATCTGCTACGGGTAGAAAAGTCTCCCTGTACCCGC AAGAACACCTGTTCCTTTACACCTTTTCCCTTCATTTTTTTTTCTACCAAAACCACTATA GTCCTCTCCCTTTCCCTTTCCCTTTCCCTTCCCCTCCTCCTCCTCCTATTCTTCTTCTCG GCACCAACAAGGAGGAGCAGAAGAGGAGAGGGGGCGACACAGTCTTGCCACTAGCTGCAT TTCTCTCCTCTCGCATTGGTCGTCTTCTAGTTCCACCGTCCACCAGGGTGCGCAGGGCTG AGAAGGGCGATGGGGGCGGGGGAGGAGGATGCGGCGGCGGCATGGGAGAAGGTGGAGGCC AAGGAGGAGAGGATCATGGTGTCCGTGCGGGTGCGGCCCCTGAACGGCAGGGAGTCCGGC GACAGCTCCGACTGGGAGTGCATTAGCCCCACCACCGTCATGTTCCGGAGTACCGTTCCT GACCGCGCCATGTTCCCCACCGCCTACACCTATGACAGGGTGTTTGGCCCCAATTGCTCT ACCAGACAGGTCTACGAGGAAGGAGCAAAAGAAGTTGCTCTATCAGTTGTCAGTGGAATC AACTCAAGCATATTTGCGTATGGGCAAACAAGCAGCGGAAAGACTTACACAATGACTGGA ATTACTGAGTACAGTGTGATGGACATTTATGACTACATAGAGAAGCACCCTGAAAGAGAA TTCATGCTGAAATTCTCAGCAATAGAGATATATAATGAAGCTGTGAGGGATCTTCTGAGC CATGATACGACACCTCTTAGACTGCTTGACGATCCTGAGAAAGGGACTACTGTTGAAAAG CTTACCGAGGAAACATTGAGGGACAAGGACCATCTTAGGGATCTTCTTGGAATGTGTGAA GCTCAAAGAGAGATTGGAGAAACGGCTTTGAACGAAGCGAGTTCTAGGTCCCACCAAATA CTCAGGCTGACAATCGAAAGTTCTGTTAAGCAGTATTTAGGAAGAAGCAAATCGAGCACC CTGGTGTCTTGTGTGAACTTTGTTGACCTAGCTGGAAGTGAGCGAGCATCTCAGACTGCT TCAGCTGGTATGAGGTTAAAAGAAGGTAGTCATATTAATCGAAGTCTGCTAACACTGGGA AAGGTTGTTCGCCAACTCAGCAAGGGAAGAAATGGTCATATCCCTTATAGAGATTCAAAG CTGACACGCATATTACAGTCCTCTTTGGGAGGCAATGCAAGAACAGCCATTGTCTGCACA ATGAGCCCTGCACACACTCATATTGAGCAATCCAGGAACACACTTCTGTTTGCGACTTGC GCAAAGGAGGTAGTTACAAATGCACAGGTCAATGTAGTGATGTCTGACAAAGCACTACTG AAGCATCTACAGAGAGAGCTCGCAAGATTAGAAAATGAACTGAAATTGCCGGAGTCAGCC TCCTGCACTAGTCATGCTGAAGCTTTAAGAGAGAAGGATGCACAGATTAAAAAGCTGGAA AAACAGCTTAGGGAATTGATAGAAGAAAAGGACACCGTTCAGTCTCAACTTAACTGTTTA CTGAGAAGTGATGGTGACGACCATGACAATGATCGTGCTGCAAAGCGATGGGATGTCCAT AGTCGGTCCTCAGAGTCTCTTGCACGAAATGCATCGGAGGAAGCACTTTCGGTTTCAGAC ACTTATGGAGGTTCTTATCAAGATCAAGGTCACGCAGTGTTTGATGGATCATATGTCTTC AGTGCTGATCATGATGGCTTGTCATCCCCCAATAAACCAATGGATCTTCCTCAGCAAACA AGGGTTCGGCAGCCAGTTTCACCTTGGCACCCTACTAGCAACTATAGCTCTGATGGTGCG GAGTCATATAACATAAAGGAGGTAGCTTTCAGAACTGCATCTGAGGTATCCGAAGAACAT TGTAGGGAAGTGCAATGTATAGAGATACATGAGCATAGAAGAAGCACAAGCCAGGAATTT AACGTATTACTCCATGAGGGCACTAAGCTCCACATACCTGAAGTAGAGGACATCTCTAGA GACGCAGTCCCGCAACCTGATGAAGTGCTAGAAGCAGGGAGCATAACAGAAAAAATGGAA GATCATATGAAGATATACGCTAGCAAAGAGGAGCAGCAGGCCGAGATCATAGCAAATGCA GTAGAAGATCCTATTGAAGTGCATCAATGTGAATCTGATGACTTTGCACACAACTTTGTC AAACTGTACCCATGTGATTCTAACATTTCTCTGGACGTTGGCAAACCTTACCCTCATGAA TGTCTTACTGTAAAGAGGTGTATAACGAGCTCCAAGGATAGTGCATTGGCTAGAAGTCAA AGCTGCAGGGCTAGCTTCATGATCATTCCAAATAGTTGGTTTGATGATTCGGAAAACACC AGGCAGACACCACCTGATGAAATCTTCAGGTATCCTCCCAGAAGGCCTGATAAAGTCAGG AGAAGTCTGTACCAAGGAAATGATGATTGCCAAAACAATAACACTTCAGTAGACCTCTCT GCTGATTCTGGAGAAGTAGTTTGTGATGAAGTAGTTAAGGACACAGGTACCAGTGATGCA GTCAAGGACATGAGCACCAGTGCTGAAGTAGTCAAGGACATGAGTACCAATGATGAAGTA GTTAAGGCCATGAGCACCAGTGATGAAGTAGTCAAGGACATGAGCACCAGTGATGAAGTA GGCAAGGAGTCGAGTACCAGTGAAGCAGAACAAGAAGTTTGTATGGGTGACATCAGTTGT GTCACAGAGCTGGAACAGAAGACAGCAAAACACCATGAGGACCAACCCGAGGAACATGAG GCAGAGACTGTTAGAGATGAGTGTACAGCAGTTAAAACTGTCAAAGATGTTGGCATAGAC GCAGTCCCGAGTACCGCCGAGTCTCCTTCGTGCTGGCCTATTGATTTTGCAAATAGGCAG CGGGAGATCATCGAGTTGTGGCACGACTGCAACGTGTCCCTAGTACACAGGACCTACTTC TTCCTCCTCTTCAAGGGAGATGCTGCAGATAGCGTCTACATGGAAGTGGAGCACAGGAGA CTGTCCTTCATCCTCAGCTCGTTCAGCACCAACTCCGCAGGAGGCGAGCTTAACTCCGCA ATCGCGTCCAGCTTGAAGAATCTGAAACGTGAGAGGGACATGTTCTACAAGCAGATGCTC AAGAAGCTCGCCAACGGGGACAAGGAGGGCATCTACACCAGATGGGGGATCGATCTGGGC TCCAAACAGCGGCGGCTTCAGCTATCTCGCCTCGTATGGACGCGGGCTGACATGGAGCAT GTCCGGGAGAGCGCCTCGCTGGTGGCGAGGCTGATCGACCTGGTTGAGCCAGGGCAGGCT CTCAAGGAGATGTTCAGCCTCAACTTCACACTGGCTCCCAGAACCGAACGGCGGTCTTTC AGCCTGCTACTAGGCGCGTGATCTTTGACGTACGAAGGTAGAAGGGTTTGATTTACCTAG TAAGTACAAGGAGGTTGACTTAACAGGAGAAGAGGACTATGCTGCGTATCATCGATTGGT TTCACGCATGTGTCTCTGCCTTGTTTTTGCTCGTTGTGTGCGTTTGAAAGAATTGTGTGC GCGTGCGTGTGTGATATTTCTGTGTGCAGTCTCACAAAAGTGAATCAATCAGACAGTACA GCTCTCCCTACCTTGCGTCGTATGTTCGTTTGTAAGAGTTTGTTCGTCAACCAAAATTTT GGAAGCCATGCGTGGGAGCATCGCACCATCCGGAATTTCCTATTTGCCCCACTTTGCATG GGCCGGCCTAGTTTTGCCTGGTTTTGTAAACCTTTTAGGAGGCTCTTTGACACGTTTTTT CATTTTGTACAGGTTTTTCTGTTTTCTTTTTTCCTTTTTTAAGGTTATTATATCTTTTTT AAACTTC
Protein Sequence (1043 aa)
>BART1_0-u52598.003 1043 150831_barley_pseudomolecules MGAGEEDAAAAWEKVEAKEERIMVSVRVRPLNGRESGDSSDWECISPTTVMFRSTVPDRA MFPTAYTYDRVFGPNCSTRQVYEEGAKEVALSVVSGINSSIFAYGQTSSGKTYTMTGITE YSVMDIYDYIEKHPEREFMLKFSAIEIYNEAVRDLLSHDTTPLRLLDDPEKGTTVEKLTE ETLRDKDHLRDLLGMCEAQREIGETALNEASSRSHQILRLTIESSVKQYLGRSKSSTLVS CVNFVDLAGSERASQTASAGMRLKEGSHINRSLLTLGKVVRQLSKGRNGHIPYRDSKLTR ILQSSLGGNARTAIVCTMSPAHTHIEQSRNTLLFATCAKEVVTNAQVNVVMSDKALLKHL QRELARLENELKLPESASCTSHAEALREKDAQIKKLEKQLRELIEEKDTVQSQLNCLLRS DGDDHDNDRAAKRWDVHSRSSESLARNASEEALSVSDTYGGSYQDQGHAVFDGSYVFSAD HDGLSSPNKPMDLPQQTRVRQPVSPWHPTSNYSSDGAESYNIKEVAFRTASEVSEEHCRE VQCIEIHEHRRSTSQEFNVLLHEGTKLHIPEVEDISRDAVPQPDEVLEAGSITEKMEDHM KIYASKEEQQAEIIANAVEDPIEVHQCESDDFAHNFVKLYPCDSNISLDVGKPYPHECLT VKRCITSSKDSALARSQSCRASFMIIPNSWFDDSENTRQTPPDEIFRYPPRRPDKVRRSL YQGNDDCQNNNTSVDLSADSGEVVCDEVVKDTGTSDAVKDMSTSAEVVKDMSTNDEVVKA MSTSDEVVKDMSTSDEVGKESSTSEAEQEVCMGDISCVTELEQKTAKHHEDQPEEHEAET VRDECTAVKTVKDVGIDAVPSTAESPSCWPIDFANRQREIIELWHDCNVSLVHRTYFFLL FKGDAADSVYMEVEHRRLSFILSSFSTNSAGGELNSAIASSLKNLKRERDMFYKQMLKKL ANGDKEGIYTRWGIDLGSKQRRLQLSRLVWTRADMEHVRESASLVARLIDLVEPGQALKE MFSLNFTLAPRTERRSFSLLLGA