- Transcript BART1_0-u52598.001
- Transcript IDBART1_0-u52598.001
- Gene IDBART1_0-u52598
Barley RTD
Exon Structure of BART1_0-u52598.001
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 244648196 | 244647728 | + |
| chr7H | 2 | 244649011 | 244648793 | + |
| chr7H | 3 | 244649246 | 244649157 | + |
| chr7H | 4 | 244649454 | 244649354 | + |
| chr7H | 5 | 244649654 | 244649541 | + |
| chr7H | 6 | 244649826 | 244649745 | + |
| chr7H | 7 | 244649975 | 244649908 | + |
| chr7H | 8 | 244650141 | 244650076 | + |
| chr7H | 9 | 244650345 | 244650221 | + |
| chr7H | 10 | 244651074 | 244650741 | + |
| chr7H | 11 | 244651289 | 244651173 | + |
| chr7H | 12 | 244652881 | 244651667 | + |
| chr7H | 13 | 244653452 | 244653142 | + |
| chr7H | 14 | 244654394 | 244653589 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.394873 | 0 | 1.31728 |
| morex | ETI | 0 | 0 | 0 |
| morex | LEA | 0 | 0 | 0 |
| morex | EPI | 0 | 0 | 0 |
| morex | ROO | 0 | 0 | 0 |
| morex | ROO2 | 0 | 0 | 0 |
| morex | NOD | 0.000000339635 | 0 | 0 |
| morex | RAC | 0 | 0 | 0.00000000241358 |
| morex | INF1 | 0 | 0 | 0.00000115315 |
| morex | INF2 | 0 | 0.00000000601979 | 0.00141183 |
| morex | CAR5 | 0.678269 | 0 | 0 |
| morex | CAR15 | 0 | 0 | 0 |
| morex | LEM | 0 | 0 | 0.457602 |
| morex | LOD | 0 | 0 | 0 |
| morex | PAL | 0 | 0.413872 | 0 |
| morex | SEN | 0 | 0 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g43400.2 | +1 | 0.0 | 1494 | 749/1023 (73%) | protein|kinesin motor domain containing protein, expressed |
| TAIR PP10 | AT5G66310 @ ARAPORT AT5G66310.1 @ TAIR |
+1 | 0.0 | 717 | 458/1093 (42%) | Symbols: | ATP binding microtubule motor family protein | chr5:26485786-26490304 REVERSE LENGTH=1063 |
| BRACH PP3 | Bradi3g42190.1.p | +1 | 0.0 | 1578 | 792/1017 (78%) | pacid=32814334 transcript=Bradi3g42190.1 locus=Bradi3g42190 ID=Bradi3g42190.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (4117 bp)
>BART1_0-u52598.001 4117 150831_barley_pseudomolecules CTTGGACTTTGTCGTCGGGACTACATTTTCTTAGTCCCCACTATAACTAAGCTAAATAAC AAATTAGAAACTCTATTTAAGAATGCTGTACCACGTTCAACGGGACACATCACATGGCAT TCAGACAAGGTAGGCCCGCCGGAACTCTCTGTAGGCCCCGCGGGCGCCCCTTGACTGTGA TTGGCCGATGGGCCGTCCTATCTGCTACGGGTAGAAAAGTCTCCCTGTACCCGCAAGAAC ACCTGTTCCTTTACACCTTTTCCCTTCATTTTTTTTTCTACCAAAACCACTATAGTCCTC TCCCTTTCCCTTTCCCTTTCCCTTCCCCTCCTCCTCCTCCTATTCTTCTTCTCGGCACCA ACAAGGAGGAGCAGAAGAGGAGAGGGGGCGACACAGTCTTGCCACTAGCTGCATTTCTCT CCTCTCGCATTGGTCGTCTTCTAGTTCCACCGTCCACCAGGGTGCGCAGGGCTGAGAAGG GCGATGGGGGCGGGGGAGGAGGATGCGGCGGCGGCATGGGAGAAGGTGGAGGCCAAGGAG GAGAGGATCATGGTGTCCGTGCGGGTGCGGCCCCTGAACGGCAGGGAGTCCGGCGACAGC TCCGACTGGGAGTGCATTAGCCCCACCACCGTCATGTTCCGGAGTACCGTTCCTGACCGC GCCATGTTCCCCACCGCCTACACCTATGACAGGGTGTTTGGCCCCAATTGCTCTACCAGA CAGGTCTACGAGGAAGGAGCAAAAGAAGTTGCTCTATCAGTTGTCAGTGGAATCAACTCA AGCATATTTGCGTATGGGCAAACAAGCAGCGGAAAGACTTACACAATGACTGGAATTACT GAGTACAGTGTGATGGACATTTATGACTACATAGAGAAGCACCCTGAAAGAGAATTCATG CTGAAATTCTCAGCAATAGAGATATATAATGAAGCTGTGAGGGATCTTCTGAGCCATGAT ACGACACCTCTTAGACTGCTTGACGATCCTGAGAAAGGGACTACTGTTGAAAAGCTTACC GAGGAAACATTGAGGGACAAGGACCATCTTAGGGATCTTCTTGGAATGTGTGAAGCTCAA AGAGAGATTGGAGAAACGGCTTTGAACGAAGCGAGTTCTAGGTCCCACCAAATACTCAGG CTGACAATCGAAAGTTCTGTTAAGCAGTATTTAGGAAGAAGCAAATCGAGCACCCTGGTG TCTTGTGTGAACTTTGTTGACCTAGCTGGAAGTGAGCGAGCATCTCAGACTGCTTCAGCT GGTATGAGGTTAAAAGAAGGTAGTCATATTAATCGAAGTCTGCTAACACTGGGAAAGGTT GTTCGCCAACTCAGCAAGGGAAGAAATGGTCATATCCCTTATAGAGATTCAAAGCTGACA CGCATATTACAGTCCTCTTTGGGAGGCAATGCAAGAACAGCCATTGTCTGCACAATGAGC CCTGCACACACTCATATTGAGCAATCCAGGAACACACTTCTGTTTGCGACTTGCGCAAAG GAGGTAGTTACAAATGCACAGGTCAATGTAGTGATGTCTGACAAAGCACTACTGAAGCAT CTACAGAGAGAGCTCGCAAGATTAGAAAATGAACTGAAATTGCCGGAGTCAGCCTCCTGC ACTAGTCATGCTGAAGCTTTAAGAGAGAAGGATGCACAGATTAAAAAGCTGGAAAAACAG CTTAGGGAATTGATAGAAGAAAAGGACACCGTTCAGTCTCAACTTAACTGTTTACTGAGA AGTGATGGTGACGACCATGACAATGATCGTGCTGCAAAGCGATGGGATGTCCATAGTCGG TCCTCAGAGTCTCTTGCACGAAATGCATCGGAGGAAGCACTTTCGGTTTCAGACACTTAT GGAGGTTCTTATCAAGATCAAGGTCACGCAGTGTTTGATGGATCATATGTCTTCAGTGCT GATCATGATGGCTTGTCATCCCCCAATAAACCAATGGATCTTCCTCAGCAAACAAGGGTT CGGCAGCCAGTTTCACCTTGGCACCCTACTAGCAACTATAGCTCTGATGGTGCGGAGTCA TATAACATAAAGGAGGTAGCTTTCAGAACTGCATCTGAGGTATCCGAAGAACATTGTAGG GAAGTGCAATGTATAGAGATACATGAGCATAGAAGAAGCACAAGCCAGGAATTTAACGTA TTACTCCATGAGGGCACTAAGCTCCACATACCTGAAGTAGAGGACATCTCTAGAGACGCA GTCCCGCAACCTGATGAAGTGCTAGAAGCAGGGAGCATAACAGAAAAAATGGAAGATCAT ATGAAGATATACGCTAGCAAAGAGGAGCAGCAGGCCGAGATCATAGCAAATGCAGTAGAA GATCCTATTGAAGTGCATCAATGTGAATCTGATGACTTTGCACACAACTTTGTCAAACTG TACCCATGTGATTCTAACATTTCTCTGGACGTTGGCAAACCTTACCCTCATGAATGTCTT ACTGTAAAGAGGTGTATAACGAGCTCCAAGGATAGTGCATTGGCTAGAAGTCAAAGCTGC AGGGCTAGCTTCATGATCATTCCAAATAGTTGGTTTGATGATTCGGAAAACACCAGGCAG ACACCACCTGATGAAATCTTCAGGTATCCTCCCAGAAGGCCTGATAAAGTCAGGAGAAGT CTGTACCAAGGAAATGATGATTGCCAAAACAATAACACTTCAGTAGACCTCTCTGCTGAT TCTGGAGAAGTAGTTTGTGATGAAGTAGTTAAGGACACAGGTACCAGTGATGCAGTCAAG GACATGAGCACCAGTGCTGAAGTAGTCAAGGACATGAGTACCAATGATGAAGTAGTTAAG GCCATGAGCACCAGTGATGAAGTAGTCAAGGACATGAGCACCAGTGATGAAGTAGGCAAG GAGTCGAGTACCAGTGAAGCAGAACAAGAAGTTTGTATGGGTGACATCAGTTGTGTCACA GAGCTGGAACAGAAGACAGCAAAACACCATGAGGACCAACCCGAGGAACATGAGGCAGAG CAGCAGACTGTTAGAGATGAGTGTACAGCAGTTAAAACTGTCAAAGATGTTGGCATAGAC GCAGTCCCGAGTACCGCCGAGTCTCCTTCGTGCTGGCCTATTGATTTTGCAAATAGGCAG CGGGAGATCATCGAGTTGTGGCACGACTGCAACGTGTCCCTAGTACACAGGACCTACTTC TTCCTCCTCTTCAAGGGAGATGCTGCAGATAGCGTCTACATGGAAGTGGAGCACAGGAGA CTGTCCTTCATCCTCAGCTCGTTCAGCACCAACTCCGCAGGAGGCGAGCTTAACTCCGCA ATCGCGTCCAGCTTGAAGAATCTGAAACGTGAGAGGGACATGTTCTACAAGCAGATGCTC AAGAAGCTCGCCAACGGGGACAAGGAGGGCATCTACACCAGATGGGGGATCGATCTGGGC TCCAAACAGCGGCGGCTTCAGCTATCTCGCCTCGTATGGACGCGGGCTGACATGGAGCAT GTCCGGGAGAGCGCCTCGCTGGTGGCGAGGCTGATCGACCTGGTTGAGCCAGGGCAGGCT CTCAAGGAGATGTTCAGCCTCAACTTCACACTGGCTCCCAGAACCGAACGGCGGTCTTTC AGCCTGCTACTAGGCGCGTGATCTTTGACGTACGAAGGTAGAAGGGTTTGATTTACCTAG TAAGTACAAGGAGGTTGACTTAACAGGAGAAGAGGACTATGCTGCGTATCATCGATTGGT TTCACGCATGTGTCTCTGCCTTGTTTTTGCTCGTTGTGTGCGTTTGAAAGAATTGTGTGC GCGTGCGTGTGTGATATTTCTGTGTGCAGTCTCACAAAAGTGAATCAATCAGACAGTACA GCTCTCCCTACCTTGCGTCGTATGTTCGTTTGTAAGAGTTTGTTCGTCAACCAAAATTTT GGAAGCCATGCGTGGGAGCATCGCACCATCCGGAATTTCCTATTTGCCCCACTTTGCATG GGCCGGCCTAGTTTTGCCTGGTTTTGTAAACCTTTTAGGAGGCTCTTTGACACGTTTTTT CATTTTGTACAGGTTTTTCTGTTTTCTTTTTTCCTTTTTTAAGGTTATTATATCTTTTTT AAACTTCGTAAAGTTCAAAAAATGTTCTAAATTTTAA
Protein Sequence (1045 aa)
>BART1_0-u52598.001 1045 150831_barley_pseudomolecules MGAGEEDAAAAWEKVEAKEERIMVSVRVRPLNGRESGDSSDWECISPTTVMFRSTVPDRA MFPTAYTYDRVFGPNCSTRQVYEEGAKEVALSVVSGINSSIFAYGQTSSGKTYTMTGITE YSVMDIYDYIEKHPEREFMLKFSAIEIYNEAVRDLLSHDTTPLRLLDDPEKGTTVEKLTE ETLRDKDHLRDLLGMCEAQREIGETALNEASSRSHQILRLTIESSVKQYLGRSKSSTLVS CVNFVDLAGSERASQTASAGMRLKEGSHINRSLLTLGKVVRQLSKGRNGHIPYRDSKLTR ILQSSLGGNARTAIVCTMSPAHTHIEQSRNTLLFATCAKEVVTNAQVNVVMSDKALLKHL QRELARLENELKLPESASCTSHAEALREKDAQIKKLEKQLRELIEEKDTVQSQLNCLLRS DGDDHDNDRAAKRWDVHSRSSESLARNASEEALSVSDTYGGSYQDQGHAVFDGSYVFSAD HDGLSSPNKPMDLPQQTRVRQPVSPWHPTSNYSSDGAESYNIKEVAFRTASEVSEEHCRE VQCIEIHEHRRSTSQEFNVLLHEGTKLHIPEVEDISRDAVPQPDEVLEAGSITEKMEDHM KIYASKEEQQAEIIANAVEDPIEVHQCESDDFAHNFVKLYPCDSNISLDVGKPYPHECLT VKRCITSSKDSALARSQSCRASFMIIPNSWFDDSENTRQTPPDEIFRYPPRRPDKVRRSL YQGNDDCQNNNTSVDLSADSGEVVCDEVVKDTGTSDAVKDMSTSAEVVKDMSTNDEVVKA MSTSDEVVKDMSTSDEVGKESSTSEAEQEVCMGDISCVTELEQKTAKHHEDQPEEHEAEQ QTVRDECTAVKTVKDVGIDAVPSTAESPSCWPIDFANRQREIIELWHDCNVSLVHRTYFF LLFKGDAADSVYMEVEHRRLSFILSSFSTNSAGGELNSAIASSLKNLKRERDMFYKQMLK KLANGDKEGIYTRWGIDLGSKQRRLQLSRLVWTRADMEHVRESASLVARLIDLVEPGQAL KEMFSLNFTLAPRTERRSFSLLLGA