Transcript Data
Barley RTD
Links



Exon Structure of BART1_0-u51812.044

ChromosomeExonStartStopDirection
chr7H1140680403140680151+
chr7H2140680803140680682+
chr7H3140681781140681165+
chr7H4140683083140681885+
chr7H5140683501140683422+
chr7H6140684053140683958+
chr7H7140684216140684143+
chr7H8140684701140684566+
chr7H9140685323140684971+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Salmon TPM Values: sixteensamplesmorex

These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials


SampleTreatmentRep 1Rep 2Rep 3
morexEMB1.229881.854070
morexETI2.717321.158992.22508
morexLEA0.5037612.54731.99576
morexEPI1.021340.1301050.724468
morexROO1.9133300.897557
morexROO24.19843.566864.1729
morexNOD1.911870.4114346.16824
morexRAC3.500122.80872.63929
morexINF17.562668.942656.7664
morexINF22.711943.703486.67741
morexCAR52.1205300
morexCAR1500.001952232.39513
morexLEM7.431937.243533.2485
morexLOD4.568096.268995.7868
morexPAL3.322693.222862.80546
morexSEN2.946893.290612.36467



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os06g19470.2 +1 0.0 794 536/813 (66%) protein|WW domain containing protein, expressed
TAIR PP10 AT3G13225 @ ARAPORT
AT3G13225.1 @ TAIR		 +1 1e-34 142 105/183 (57%) Symbols: | WW domain-containing protein | chr3:4258928-4261728 REVERSE LENGTH=771
BRACH PP3 Bradi1g43210.1.p +1 0.0 932 615/812 (76%) pacid=32799652 transcript=Bradi1g43210.1 locus=Bradi1g43210 ID=Bradi1g43210.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

Click here to see more tracks within GBrowse -->



grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (2930 bp)

>BART1_0-u51812.044 2930 150831_barley_pseudomolecules
TAGGGGAGGAAAACCGCGAGCAGCAAACTGGTGTTCCCACTTCACCATCTTCGTCAGGTG
GGTTCAATCAATTTCCTTCCAAGGGATATGTAAAGACGGCACATGCCTATGGAATGTAAA
TTTGGTGGAAATTTGGAATTTTGTTCAAGCATGTGTATGCTCCAAATTTCTGGTTTGAGG
CACATGTAGGGTTCCCGGCCTGCAAGGAACACTGAGTAAATTCTTCAGATCAGGCTGCCA
CTGTCAAAACTGGATAAGAAGGAAAATCCTCTAGCGTTGCTTGGGCAATATAGTGATGAT
GAAGAAGAGGATGAAGTAGCAACAGATCAACCCAATGGTGAAACTAAGGGAAGTTCAACT
GATGCAAGTGCCAAGGTTTTTAACGATCATGGTGATGTAACTGGGGATAAAGGCGATGCA
GATAGTGAACTGCCTGCTTCTGTTAGTGTTCAGCAGGAAGCATCTCAAGCCGATGATGTA
AAAACTATCACAGAAAATGTTGCTGAGGAATTTACTGTTGCCCCTGAGCCAACTCTGGAA
AATGAGTGTGTGACAGTAATGGAAGCTGTCCCAGATTCATCTGGCATGCAAATCGTGGGT
GACATTGGTGGGAATTGGAAGGCTATAATGCATGAACAAAGTAATCAGTGTTACTACTGG
AACACAGTTACAGGAGAAACTTCTTGGGAGATTCCTGATGGATTAGCTTCGGGGGTTGCT
GGTGATGGAGTCACTTCTGCATCTGTGCCTACTCATATGGGCTACTCTGTAGAAGCTCAA
GCACATGTCCTTCCCCACAGCAATGTTGAAGCATATCCTAGTGATGTATCTGTTGGGAAT
GGCACAGCAACCTATACTGCTATGGGAACTTATACTCATGATGCTTATGCTTACACTGGA
GCCGTCGCTAGTCATGAGTCAGTGGACATTGACCCCTTGCAGCTTGCAAAATATGGTGAG
GATTTACTGCAAAGATTGAAGCTGCTGGAAAGGCCACATGTTGCCATTGACAGTCTTGAG
TTGATAAAAAGAGAAATTGAGATACGAGTAGCAGACTGTAATGCACTCTCCTCGTATGGA
TCTTCTTTACTTCCATTGTGGTTGCATGCTGAGGTGCACCTTAAGCAACTAGAACTTTCA
GTTTCCAAGTTTGAAGCTAGCTACACTACCAGACATGGATATCTGGAGACGGTGGATGCA
GGACACAAAGCACCTAATGAAGCTAAAGTTATGGCACCCTCCGAGGGTGAGCATTTGAAA
GTTGATGTTAGCACTCTGGGAATTGGTACTGGCGATGAAAATATTAAGGTTGAGGAACCA
TGTACAACATCATCTGCTCAGAACTCACAATGTGTGGCAGCAGCTATTTTAAGAGTTGAA
TCAGACAGTGATGAAGATATGGACGTGGACATGGAGGTCGATGAAGAAGGTGTTGAAGAG
CACGGCGGATTCACTTCTATGCCAAATAAGGAGCATCCTTCATCAGAGCAAGTACGATCA
CCAGCTTTGTCATCATTGGAAGACTCTGCTCCTCCCCAACAGGATAATGACATTCCTCCT
CCACCACCACCACCAGAAGAGGAATGGATTCCACCTCCACCACCGGAGAATGAACCAGCT
CCTCCACCTCCTCCTGAGCCTGAAGAGCCTGCTGTGTCATTTGTTCATGCTGATACACTT
CCTCAGCCATACGGAGGTCAAGCAAACTTGGGTTATATGCTTCCAGGAATGGAGTACTAT
CCCGCTTCTGGTACAGATGGCACAAATGCCAGCTACTATATGCAAGCGAGCGATTCTCAT
ATTCTTCAATCGCAGCAGCATTCTTACTACGCACCGTTGTCTGCAAGTGGCGTATCTATT
CCTGTTGAGACCACATCGATCCCCCCAGTACCAGGTTCTTATTATAGCTATCCTTCTGTC
ACTATGGCTGCCACTGAAGTAGCGGCTGAATCTTCTGGATACTATGGTTCATCAACCTCT
GCCATTTCTAGCGGTGAATTAGATAACAAAACAAGCTCAGCCTCCCTTGTTTCAAATAGT
AATGTGAATCCTGTGGAGTCTGATAAAGTGATATCCAAGGAGCCTACAGTTGTTTCTTTG
AGCCAATCAGTAGGGGCAGCCTCAGCTTCAGCACCAACAGTACATGGTAGTTCTACTCTA
GCTTCTACTAGTACCACTAATCAGACTAAAGTTCCTCGTACTAAGAAGCGACCTGTTGCT
GTTGCATCATCACTGAGATCTAATAAGAAGGTCTCAAGTCTGGTGGATAAGTGGAAAGCT
GCAAAAGAGGAGCTTTGTGATGAAGAGGAAGAGGAGCCTGAAGATGCTTTGGAGTACCTA
GAAAGGAAACGTCGGAAGGAAATAGATGGGTGGCGTAAGCAACAAATAGCTAGTGGAGAA
GCTAAGGAAAATGCTAATTTTGTTCCCCTTGGCGGTAACTGGCGTGACCGTGTAAAACGC
AAAAGAGCTGAAGCAAAGAAGGAAGCAAAGACTGAATCTGTTTGTGCAGCTGCCGAACAA
CACAAAGGAGAGCCTGATCTCTCAGAGCTTTCCAAGGGTCTCCCTTCTGGGTGGCAGGCA
TACATAGACGAGTCTACGAAGCAAGTGTACTATGGGAACAACCTCACTTCCGAGACTACT
TGGGATCGGCCTAGCAAATAAAGATTGAACTAGTTGAAGATGGTCCAGTTTTGCTCTGTA
GATATCCTCATACATCTATACGTTGCCTGTCTGGTTATGAGGCTGTATTGTTTCTTTTAT
TTTCCACTGGGAGATCGTAGCAGGAAGGATACTTCATTTTGGTATATAGAGGCATCCCTT
GTAAGAGTGGCAACTTGAGATCGAATTACTGAAGCAAAAAATACTAGTTAGTTGCTGACC
AAGGAAAAATGTGCCTTGTTAAGTGGTGGGAGTCTTTACCTCGATCTGAT



Protein Sequence (700 aa)

>BART1_0-u51812.044 700 150831_barley_pseudomolecules
MEAVPDSSGMQIVGDIGGNWKAIMHEQSNQCYYWNTVTGETSWEIPDGLASGVAGDGVTS
ASVPTHMGYSVEAQAHVLPHSNVEAYPSDVSVGNGTATYTAMGTYTHDAYAYTGAVASHE
SVDIDPLQLAKYGEDLLQRLKLLERPHVAIDSLELIKREIEIRVADCNALSSYGSSLLPL
WLHAEVHLKQLELSVSKFEASYTTRHGYLETVDAGHKAPNEAKVMAPSEGEHLKVDVSTL
GIGTGDENIKVEEPCTTSSAQNSQCVAAAILRVESDSDEDMDVDMEVDEEGVEEHGGFTS
MPNKEHPSSEQVRSPALSSLEDSAPPQQDNDIPPPPPPPEEEWIPPPPPENEPAPPPPPE
PEEPAVSFVHADTLPQPYGGQANLGYMLPGMEYYPASGTDGTNASYYMQASDSHILQSQQ
HSYYAPLSASGVSIPVETTSIPPVPGSYYSYPSVTMAATEVAAESSGYYGSSTSAISSGE
LDNKTSSASLVSNSNVNPVESDKVISKEPTVVSLSQSVGAASASAPTVHGSSTLASTSTT
NQTKVPRTKKRPVAVASSLRSNKKVSSLVDKWKAAKEELCDEEEEEPEDALEYLERKRRK
EIDGWRKQQIASGEAKENANFVPLGGNWRDRVKRKRAEAKKEAKTESVCAAAEQHKGEPD
LSELSKGLPSGWQAYIDESTKQVYYGNNLTSETTWDRPSK