- Transcript BART1_0-u51812.043
- Transcript IDBART1_0-u51812.043
- Gene IDBART1_0-u51812
Barley RTD
Exon Structure of BART1_0-u51812.043
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 140680803 | 140680125 | + |
| chr7H | 2 | 140681744 | 140681165 | + |
| chr7H | 3 | 140683083 | 140681885 | + |
| chr7H | 4 | 140684053 | 140683179 | + |
| chr7H | 5 | 140684216 | 140684143 | + |
| chr7H | 6 | 140684701 | 140684566 | + |
| chr7H | 7 | 140685372 | 140684971 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 3.43835 | 6.11593 | 3.4101 |
| morex | ETI | 8.64927 | 6.44661 | 4.20919 |
| morex | LEA | 0.338628 | 2.97164 | 3.04892 |
| morex | EPI | 3.78854 | 6.71923 | 1.79009 |
| morex | ROO | 0 | 0.276185 | 0 |
| morex | ROO2 | 1.64829 | 1.72409 | 0.850402 |
| morex | NOD | 1.27397 | 4.18619 | 3.41271 |
| morex | RAC | 3.68499 | 3.95898 | 2.77712 |
| morex | INF1 | 8.27267 | 7.01206 | 7.36708 |
| morex | INF2 | 32.1579 | 3.09598 | 14.2086 |
| morex | CAR5 | 0 | 0.132562 | 7.51075 |
| morex | CAR15 | 4.59041 | 5.29175 | 2.77488 |
| morex | LEM | 1.73533 | 0.000139832 | 1.48227 |
| morex | LOD | 0.690829 | 0.968346 | 0.559145 |
| morex | PAL | 1.4734 | 4.37177 | 3.50421 |
| morex | SEN | 0.49818 | 4.743 | 1.55703 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os06g19470.2 | +2 | 3e-156 | 291 | 161/241 (67%) | protein|WW domain containing protein, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g43210.1.p | +1 | 0.0 | 352 | 288/402 (72%) | pacid=32799652 transcript=Bradi1g43210.1 locus=Bradi1g43210 ID=Bradi1g43210.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3945 bp)
>BART1_0-u51812.043 3945 150831_barley_pseudomolecules AGGGGAGGCATCTACTAAAGAGGGAGTAGGGGAGGAAAACCGCGAGCAGCAAACTGGTGT TCCCACTTCACCATCTTCGTCAGGTGGGTTCAATCAATTTCCTTCCAAGGGATATGTAAA GACGGCACATGCCTATGGAATGTAAATTTGGTGGAAATTTGGAATTTTGTTCAAGCATGT GTATGCTCCAAATTTCTGGTTTGAGGCACATGTAGGGTTCCCGGCCTGCAAGGAACACTG AGTAAATTCTTCAGATCAGGCTGCCACTGTCAAAACTGGGTGTGTTCCTACCGGTAATTT CTCTTTTGGCAGCATCTGAGCGTGGGGATTTCAGGATGATTGTTGCCTCGGTTCGTATGT CTCTTTCTTTATATTGTAGCTCCTAACCTGGTTTTTTTAATTATTGCTGGGCTGCCATGG CACATTCTAAAGTAATTTTAACAAACTTGTTCTACTTTTATACCTGAGTCGATCTTCACA TATACTTCAGAAAATAGTGCAATATATATTGTCACATGAAAGCTTTCACGTTTCTAATGA TGAATCTGTTTTTTCAGATAAGAAGGAAAATCCTCTAGCGTTGCTTGGGCAATATAGTGA TGATGAAGAAGAGGATGAAGTAGCAACAGATCAACCCAATGGTGAAACTAAGGGAAGTTC AACTGATGCAAGTGCCAAGGTTTTTAACGATCATGGTGATGTAACTGGGGATAAAGGCGA TGCAGATAGTGAACTGCCTGCTTCTGTTAGTGTTCAGCAGGAAGCATCTCAAGCCGATGA TGTAAAAACTATCACAGAAAATGTTGCTGAGGAATTTACTGTTGCCCCTGAGCCAACTCT GGAAAATGAGTGTGTGACAGTAATGGAAGCTGTCCCAGATTCATCTGGCATGCAAATCGT GGGTGACATTGGTGGGAATTGGAAGGCTATAATGCATGAACAAAGTAATCAGTGTTACTA CTGGAACACAGTTACAGGAGAAACTTCTTGGGAGATTCCTGATGGATTAGCTTCGGGGGT TGCTGGTGATGGAGTCACTTCTGCATCTGTGCCTACTCATATGGGCTACTCTGTAGAAGC TCAAGCACATGTCCTTCCCCACAGCAATGTTGAAGCATATCCTAGTGATGTATCTGTTGG GAATGGCACAGCAACCTATACTGCTATGGGAACTTATACTCATGATGCTTATGCTTACAC TGGAGCCGTCGCTAGTCATGAGTCAGTGGACATTGACCCCTTGCAGCTTGCAAAATATGG CCACATGTTGCCATTGACAGTCTTGAGTTGATAAAAAGAGAAATTGAGATACGAGTAGCA GACTGTAATGCACTCTCCTCGTATGGATCTTCTTTACTTCCATTGTGGTTGCATGCTGAG GTGCACCTTAAGCAACTAGAACTTTCAGTTTCCAAGTTTGAAGCTAGCTACACTACCAGA CATGGATATCTGGAGACGGTGGATGCAGGACACAAAGCACCTAATGAAGCTAAAGTTATG GCACCCTCCGAGGGTGAGCATTTGAAAGTTGATGTTAGCACTCTGGGAATTGGTACTGGC GATGAAAATATTAAGGTTGAGGAACCATGTACAACATCATCTGCTCAGAACTCACAATGT GTGGCAGCAGCTATTTTAAGAGTTGAATCAGACAGTGATGAAGATATGGACGTGGACATG GAGGTCGATGAAGAAGGTGTTGAAGAGCACGGCGGATTCACTTCTATGCCAAATAAGGAG CATCCTTCATCAGAGCAAGTACGATCACCAGCTTTGTCATCATTGGAAGACTCTGCTCCT CCCCAACAGGATAATGACATTCCTCCTCCACCACCACCACCAGAAGAGGAATGGATTCCA CCTCCACCACCGGAGAATGAACCAGCTCCTCCACCTCCTCCTGAGCCTGAAGAGCCTGCT GTGTCATTTGTTCATGCTGATACACTTCCTCAGCCATACGGAGGTCAAGCAAACTTGGGT TATATGCTTCCAGGAATGGAGTACTATCCCGCTTCTGGTACAGATGGCACAAATGCCAGC TACTATATGCAAGCGAGCGATTCTCATATTCTTCAATCGCAGCAGCATTCTTACTACGCA CCGTTGTCTGCAAGTGGCGTATCTATTCCTGTTGAGACCACATCGATCCCCCCAGTACCA GGTTCTTATTATAGCTATCCTTCTGTCACTATGGCTGCCACTGAAGTAGCGGCTGAATCT TCTGGATACTATGGTTCATCAACCTCTGCCATTTCTAGCGGTGAATTAGATAACAAAACA AGCTCAGCCTCCCTTGTTTCAAATAGTAATGTGAATCCTGTGGAGTCTGATAAAGTGATA TCCAAGGAGCCTACAGTTGTTTCTTTGAGCCAATCAGTAGGGGCAGCCTCAGCTTCAGCA CCAACAGTACATGGTAGTTCTACTCTAGCTTCTACTAGTACCACTAATCAGACTAAAGGT AATTTATTATTCTTTGCAAGGATACTTAATGTTACTAGCTCGTACTCCCTCCGTTCCTAA ATATAAGTCCTTTTAGAGGTTCTACTAGGGGATTACATACGAATGTATATAGACATACTT TAGAGTGTAGATTCTTTCATTTTGCTCCGTATGTAGTCCTCTAATGAAATCTTTAAAAAG ACTTATATTTAGGAACGGAGGGAGTAGTTGTTTTAGTTTTGACATTTGCACTGATTTGCA GTTCCTCGTACTAAGAAGCGACCTGTTGCTGTTGCATCATCACTGAGATCTAATAAGAAG GTCTCAAGTCTGGTGGATAAGGTATCTCCCTGACCTCCCAAAGCTGCTGTTAAAATAGTG ACCATCTCTGCTCTCTCCTACCCTACCATCAACTGCTCCCAAGTGTGGTGCTTGACATCA ATGAAGAAATTTAACTCACTGCATGATATGCATTATTGCTAATGGTGTATACTTAGTCGT TGAGACATACTCTTGGTTATGTTATTAGCAAGAGAGCACACTGTCCTCGGCCAGTTTATT TCGTGGTGCACAACATTGGTCCTCCAGAAAAAAAACTCATGCAAGTGGGAGTATGGCCGT GTTTCCTGACTATTTCGTCTCATGTTTATCATTTCTTATTTTAAAGGCAGAGCAATCTGT TTACATGGTAATTGGTAAGGCTTAAGACAAGGTGAGTGTTGATGTATAATGATTGTTTCC TTATTAATCTACCTTTACTAAAGCGACCTTTTATTTTATTTTATTTCACTATTACAGTGG AAAGCTGCAAAAGAGGAGCTTTGTGATGAAGAGGAAGAGGAGCCTGAAGATGCTTTGGAG TACCTAGAAAGGAAACGTCGGAAGGAAATAGATGGGTGGCGTAAGCAACAAATAGCTAGT GGAGAAGCTAAGGAAAATGCTAATTTTGTTCCCCTTGGCGGTAACTGGCGTGACCGTGTA AAACGCAAAAGAGCTGAAGCAAAGAAGGAAGCAAAGACTGAATCTGTTTGTGCAGCTGCC GAACAACACAAAGGAGAGCCTGATCTCTCAGAGCTTTCCAAGGGTCTCCCTTCTGGGTGG CAGGCATACATAGACGAGTCTACGAAGCAAGTGTACTATGGGAACAACCTCACTTCCGAG ACTACTTGGGATCGGCCTAGCAAATAAAGATTGAACTAGTTGAAGATGGTCCAGTTTTGC TCTGTAGATATCCTCATACATCTATACGTTGCCTGTCTGGTTATGAGGCTGTATTGTTTC TTTTATTTTCCACTGGGAGATCGTAGCAGGAAGGATACTTCATTTTGGTATATAGAGGCA TCCCTTGTAAGAGTGGCAACTTGAGATCGAATTACTGAAGCAAAAAATACTAGTTAGTTG CTGACCAAGGAAAAATGTGCCTTGTTAAGTGGTGGGAGTCTTTACCTCGATCTGATACCA TTTGCTTTCAAAACAATGTCAATTATATTCGATTTTAGGTTGTGC
Protein Sequence (340 aa)
>BART1_0-u51812.043 340 150831_barley_pseudomolecules MAPSEGEHLKVDVSTLGIGTGDENIKVEEPCTTSSAQNSQCVAAAILRVESDSDEDMDVD MEVDEEGVEEHGGFTSMPNKEHPSSEQVRSPALSSLEDSAPPQQDNDIPPPPPPPEEEWI PPPPPENEPAPPPPPEPEEPAVSFVHADTLPQPYGGQANLGYMLPGMEYYPASGTDGTNA SYYMQASDSHILQSQQHSYYAPLSASGVSIPVETTSIPPVPGSYYSYPSVTMAATEVAAE SSGYYGSSTSAISSGELDNKTSSASLVSNSNVNPVESDKVISKEPTVVSLSQSVGAASAS APTVHGSSTLASTSTTNQTKGNLLFFARILNVTSSYSLRS