- Transcript BART1_0-u51812.042
- Transcript IDBART1_0-u51812.042
- Gene IDBART1_0-u51812
Barley RTD
Exon Structure of BART1_0-u51812.042
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 140680803 | 140680125 | + |
| chr7H | 2 | 140681744 | 140681165 | + |
| chr7H | 3 | 140683178 | 140681885 | + |
| chr7H | 4 | 140684053 | 140683422 | + |
| chr7H | 5 | 140684216 | 140684143 | + |
| chr7H | 6 | 140684701 | 140684566 | + |
| chr7H | 7 | 140685372 | 140684971 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 1.73093 | 0.357216 | 2.37875 |
| morex | ETI | 1.73416 | 9.41759 | 10.3645 |
| morex | LEA | 7.15196 | 1.84248 | 3.04275 |
| morex | EPI | 4.69469 | 0.00712384 | 6.57367 |
| morex | ROO | 2.39543 | 1.28384 | 0 |
| morex | ROO2 | 1.44003 | 2.33407 | 4.39978 |
| morex | NOD | 2.30528 | 2.57652 | 4.62197 |
| morex | RAC | 2.45534 | 2.69585 | 3.20471 |
| morex | INF1 | 8.41904 | 17.4212 | 24.9507 |
| morex | INF2 | 7.53255 | 22.2274 | 5.32619 |
| morex | CAR5 | 0 | 0.00292825 | 2.91268 |
| morex | CAR15 | 1.59494 | 0.983904 | 0.168055 |
| morex | LEM | 3.0552 | 5.16667 | 2.75528 |
| morex | LOD | 4.56576 | 3.08237 | 4.94593 |
| morex | PAL | 3.15377 | 1.12673 | 1.68166 |
| morex | SEN | 3.86493 | 3.13747 | 5.13526 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os06g19470.1 | +2 | 7e-156 | 291 | 161/241 (67%) | protein|WW domain containing protein, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g43210.1.p | +1 | 0.0 | 352 | 288/402 (72%) | pacid=32799652 transcript=Bradi1g43210.1 locus=Bradi1g43210 ID=Bradi1g43210.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3797 bp)
>BART1_0-u51812.042 3797 150831_barley_pseudomolecules AGGGGAGGCATCTACTAAAGAGGGAGTAGGGGAGGAAAACCGCGAGCAGCAAACTGGTGT TCCCACTTCACCATCTTCGTCAGGTGGGTTCAATCAATTTCCTTCCAAGGGATATGTAAA GACGGCACATGCCTATGGAATGTAAATTTGGTGGAAATTTGGAATTTTGTTCAAGCATGT GTATGCTCCAAATTTCTGGTTTGAGGCACATGTAGGGTTCCCGGCCTGCAAGGAACACTG AGTAAATTCTTCAGATCAGGCTGCCACTGTCAAAACTGGGTGTGTTCCTACCGGTAATTT CTCTTTTGGCAGCATCTGAGCGTGGGGATTTCAGGATGATTGTTGCCTCGGTTCGTATGT CTCTTTCTTTATATTGTAGCTCCTAACCTGGTTTTTTTAATTATTGCTGGGCTGCCATGG CACATTCTAAAGTAATTTTAACAAACTTGTTCTACTTTTATACCTGAGTCGATCTTCACA TATACTTCAGAAAATAGTGCAATATATATTGTCACATGAAAGCTTTCACGTTTCTAATGA TGAATCTGTTTTTTCAGATAAGAAGGAAAATCCTCTAGCGTTGCTTGGGCAATATAGTGA TGATGAAGAAGAGGATGAAGTAGCAACAGATCAACCCAATGGTGAAACTAAGGGAAGTTC AACTGATGCAAGTGCCAAGGTTTTTAACGATCATGGTGATGTAACTGGGGATAAAGGCGA TGCAGATAGTGAACTGCCTGCTTCTGTTAGTGTTCAGCAGGAAGCATCTCAAGCCGATGA TGTAAAAACTATCACAGAAAATGTTGCTGAGGAATTTACTGTTGCCCCTGAGCCAACTCT GGAAAATGAGTGTGTGACAGTAATGGAAGCTGTCCCAGATTCATCTGGCATGCAAATCGT GGGTGACATTGGTGGGAATTGGAAGGCTATAATGCATGAACAAAGTAATCAGTGTTACTA CTGGAACACAGTTACAGGAGAAACTTCTTGGGAGATTCCTGATGGATTAGCTTCGGGGGT TGCTGGTGATGGAGTCACTTCTGCATCTGTGCCTACTCATATGGGCTACTCTGTAGAAGC TCAAGCACATGTCCTTCCCCACAGCAATGTTGAAGCATATCCTAGTGATGTATCTGTTGG GAATGGCACAGCAACCTATACTGCTATGGGAACTTATACTCATGATGCTTATGCTTACAC TGGAGCCGTCGCTAGTCATGAGTCAGTGGACATTGACCCCTTGCAGCTTGCAAAATATGG CCACATGTTGCCATTGACAGTCTTGAGTTGATAAAAAGAGAAATTGAGATACGAGTAGCA GACTGTAATGCACTCTCCTCGTATGGATCTTCTTTACTTCCATTGTGGTTGCATGCTGAG GTGCACCTTAAGCAACTAGAACTTTCAGTTTCCAAGTTTGAAGCTAGCTACACTACCAGA CATGGATATCTGGAGACGGTGGATGCAGGACACAAAGCACCTAATGAAGCTAAAGTTATG GCACCCTCCGAGGGTGAGCATTTGAAAGTTGATGTTAGCACTCTGGGAATTGGTACTGGC GATGAAAATATTAAGGTTGAGGAACCATGTACAACATCATCTGCTCAGAACTCACAATGT GTGGCAGCAGCTATTTTAAGAGTTGAATCAGACAGTGATGAAGATATGGACGTGGACATG GAGGTCGATGAAGAAGGTGTTGAAGAGCACGGCGGATTCACTTCTATGCCAAATAAGGAG CATCCTTCATCAGAGCAAGTACGATCACCAGCTTTGTCATCATTGGAAGACTCTGCTCCT CCCCAACAGGATAATGACATTCCTCCTCCACCACCACCACCAGAAGAGGAATGGATTCCA CCTCCACCACCGGAGAATGAACCAGCTCCTCCACCTCCTCCTGAGCCTGAAGAGCCTGCT GTGTCATTTGTTCATGCTGATACACTTCCTCAGCCATACGGAGGTCAAGCAAACTTGGGT TATATGCTTCCAGGAATGGAGTACTATCCCGCTTCTGGTACAGATGGCACAAATGCCAGC TACTATATGCAAGCGAGCGATTCTCATATTCTTCAATCGCAGCAGCATTCTTACTACGCA CCGTTGTCTGCAAGTGGCGTATCTATTCCTGTTGAGACCACATCGATCCCCCCAGTACCA GGTTCTTATTATAGCTATCCTTCTGTCACTATGGCTGCCACTGAAGTAGCGGCTGAATCT TCTGGATACTATGGTTCATCAACCTCTGCCATTTCTAGCGGTGAATTAGATAACAAAACA AGCTCAGCCTCCCTTGTTTCAAATAGTAATGTGAATCCTGTGGAGTCTGATAAAGTGATA TCCAAGGAGCCTACAGTTGTTTCTTTGAGCCAATCAGTAGGGGCAGCCTCAGCTTCAGCA CCAACAGTACATGGTAGTTCTACTCTAGCTTCTACTAGTACCACTAATCAGACTAAAGGT AATTTATTATTCTTTGCAAGGATACTTAATGTTACTAGCTCGTACATGGTAGTTCTACTC TAGCTTCTACTAGTACCACTAATCAGACTAAAGTTCCTCGTACTAAGAAGCGACCTGTTG CTGTTGCATCATCACTGAGATCTAATAAGAAGGTCTCAAGTCTGGTGGATAAGGTATCTC CCTGACCTCCCAAAGCTGCTGTTAAAATAGTGACCATCTCTGCTCTCTCCTACCCTACCA TCAACTGCTCCCAAGTGTGGTGCTTGACATCAATGAAGAAATTTAACTCACTGCATGATA TGCATTATTGCTAATGGTGTATACTTAGTCGTTGAGACATACTCTTGGTTATGTTATTAG CAAGAGAGCACACTGTCCTCGGCCAGTTTATTTCGTGGTGCACAACATTGGTCCTCCAGA AAAAAAACTCATGCAAGTGGGAGTATGGCCGTGTTTCCTGACTATTTCGTCTCATGTTTA TCATTTCTTATTTTAAAGGCAGAGCAATCTGTTTACATGGTAATTGGTAAGGCTTAAGAC AAGGTGAGTGTTGATGTATAATGATTGTTTCCTTATTAATCTACCTTTACTAAAGCGACC TTTTATTTTATTTTATTTCACTATTACAGTGGAAAGCTGCAAAAGAGGAGCTTTGTGATG AAGAGGAAGAGGAGCCTGAAGATGCTTTGGAGTACCTAGAAAGGAAACGTCGGAAGGAAA TAGATGGGTGGCGTAAGCAACAAATAGCTAGTGGAGAAGCTAAGGAAAATGCTAATTTTG TTCCCCTTGGCGGTAACTGGCGTGACCGTGTAAAACGCAAAAGAGCTGAAGCAAAGAAGG AAGCAAAGACTGAATCTGTTTGTGCAGCTGCCGAACAACACAAAGGAGAGCCTGATCTCT CAGAGCTTTCCAAGGGTCTCCCTTCTGGGTGGCAGGCATACATAGACGAGTCTACGAAGC AAGTGTACTATGGGAACAACCTCACTTCCGAGACTACTTGGGATCGGCCTAGCAAATAAA GATTGAACTAGTTGAAGATGGTCCAGTTTTGCTCTGTAGATATCCTCATACATCTATACG TTGCCTGTCTGGTTATGAGGCTGTATTGTTTCTTTTATTTTCCACTGGGAGATCGTAGCA GGAAGGATACTTCATTTTGGTATATAGAGGCATCCCTTGTAAGAGTGGCAACTTGAGATC GAATTACTGAAGCAAAAAATACTAGTTAGTTGCTGACCAAGGAAAAATGTGCCTTGTTAA GTGGTGGGAGTCTTTACCTCGATCTGATACCATTTGCTTTCAAAACAATGTCAATTATAT TCGATTTTAGGTTGTGC
Protein Sequence (341 aa)
>BART1_0-u51812.042 341 150831_barley_pseudomolecules MAPSEGEHLKVDVSTLGIGTGDENIKVEEPCTTSSAQNSQCVAAAILRVESDSDEDMDVD MEVDEEGVEEHGGFTSMPNKEHPSSEQVRSPALSSLEDSAPPQQDNDIPPPPPPPEEEWI PPPPPENEPAPPPPPEPEEPAVSFVHADTLPQPYGGQANLGYMLPGMEYYPASGTDGTNA SYYMQASDSHILQSQQHSYYAPLSASGVSIPVETTSIPPVPGSYYSYPSVTMAATEVAAE SSGYYGSSTSAISSGELDNKTSSASLVSNSNVNPVESDKVISKEPTVVSLSQSVGAASAS APTVHGSSTLASTSTTNQTKGNLLFFARILNVTSSYMVVLL