- Transcript BART1_0-u51812.041
- Transcript IDBART1_0-u51812.041
- Gene IDBART1_0-u51812
Barley RTD
Exon Structure of BART1_0-u51812.041
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 140679678 | 140679506 | + |
| chr7H | 2 | 140680207 | 140680127 | + |
| chr7H | 3 | 140680803 | 140680682 | + |
| chr7H | 4 | 140681781 | 140681165 | + |
| chr7H | 5 | 140683083 | 140681885 | + |
| chr7H | 6 | 140683854 | 140683422 | + |
| chr7H | 7 | 140684053 | 140683958 | + |
| chr7H | 8 | 140684216 | 140684143 | + |
| chr7H | 9 | 140684701 | 140684566 | + |
| chr7H | 10 | 140685311 | 140684971 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0.533933 | 2.5217 |
| morex | ETI | 2.05351 | 3.42533 | 2.57185 |
| morex | LEA | 0 | 0.0000000231659 | 1.45207 |
| morex | EPI | 0.66974 | 2.69241 | 1.01326 |
| morex | ROO | 2.42018 | 0 | 0.619992 |
| morex | ROO2 | 1.86184 | 0.762322 | 0.420209 |
| morex | NOD | 0.000385131 | 1.52725 | 3.37618 |
| morex | RAC | 5.31849 | 2.25746 | 1.71863 |
| morex | INF1 | 0 | 0.967102 | 3.79079 |
| morex | INF2 | 3.88871 | 2.95371 | 6.23273 |
| morex | CAR5 | 0.605317 | 0 | 0.58353 |
| morex | CAR15 | 2.07356 | 2.77198 | 0 |
| morex | LEM | 2.01627 | 3.26507 | 3.99901 |
| morex | LOD | 1.79305 | 3.01004 | 1.19496 |
| morex | PAL | 3.09415 | 1.50647 | 2.3045 |
| morex | SEN | 2.35708 | 2.02449 | 1.00484 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os06g19470.2 | +2 | 0.0 | 683 | 461/718 (64%) | protein|WW domain containing protein, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g43210.1.p | +2 | 0.0 | 822 | 537/724 (74%) | pacid=32799652 transcript=Bradi1g43210.1 locus=Bradi1g43210 ID=Bradi1g43210.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3272 bp)
>BART1_0-u51812.041 3272 150831_barley_pseudomolecules CGTCACCCTCCAAACCCTAACCCTAGAATCTAGAAGACGTCCATCTCCACCCCCGGCGCG CGCCCGACTACTCGGGGCAGCGGCGATGGGGAGGCGGAAGGAGCGCCGCCTGGCGGCCAA GGCGGCCTCGGGCCGTAGGGTCAAGCTCGACCTCTTCCTCGATCCTTCCCCCGGGGAGGC ATCTACTAAAGAGGGAGTAGGGGAGGAAAACCGCGAGCAGCAAACTGGTGTTCCCACTTC ACCATCTTCGTCAGATAAGAAGGAAAATCCTCTAGCGTTGCTTGGGCAATATAGTGATGA TGAAGAAGAGGATGAAGTAGCAACAGATCAACCCAATGGTGAAACTAAGGGAAGTTCAAC TGATGCAAGTGCCAAGGTTTTTAACGATCATGGTGATGTAACTGGGGATAAAGGCGATGC AGATAGTGAACTGCCTGCTTCTGTTAGTGTTCAGCAGGAAGCATCTCAAGCCGATGATGT AAAAACTATCACAGAAAATGTTGCTGAGGAATTTACTGTTGCCCCTGAGCCAACTCTGGA AAATGAGTGTGTGACAGTAATGGAAGCTGTCCCAGATTCATCTGGCATGCAAATCGTGGG TGACATTGGTGGGAATTGGAAGGCTATAATGCATGAACAAAGTAATCAGTGTTACTACTG GAACACAGTTACAGGAGAAACTTCTTGGGAGATTCCTGATGGATTAGCTTCGGGGGTTGC TGGTGATGGAGTCACTTCTGCATCTGTGCCTACTCATATGGGCTACTCTGTAGAAGCTCA AGCACATGTCCTTCCCCACAGCAATGTTGAAGCATATCCTAGTGATGTATCTGTTGGGAA TGGCACAGCAACCTATACTGCTATGGGAACTTATACTCATGATGCTTATGCTTACACTGG AGCCGTCGCTAGTCATGAGTCAGTGGACATTGACCCCTTGCAGCTTGCAAAATATGGTGA GGATTTACTGCAAAGATTGAAGCTGCTGGAAAGGCCACATGTTGCCATTGACAGTCTTGA GTTGATAAAAAGAGAAATTGAGATACGAGTAGCAGACTGTAATGCACTCTCCTCGTATGG ATCTTCTTTACTTCCATTGTGGTTGCATGCTGAGGTGCACCTTAAGCAACTAGAACTTTC AGTTTCCAAGTTTGAAGCTAGCTACACTACCAGACATGGATATCTGGAGACGGTGGATGC AGGACACAAAGCACCTAATGAAGCTAAAGTTATGGCACCCTCCGAGGGTGAGCATTTGAA AGTTGATGTTAGCACTCTGGGAATTGGTACTGGCGATGAAAATATTAAGGTTGAGGAACC ATGTACAACATCATCTGCTCAGAACTCACAATGTGTGGCAGCAGCTATTTTAAGAGTTGA ATCAGACAGTGATGAAGATATGGACGTGGACATGGAGGTCGATGAAGAAGGTGTTGAAGA GCACGGCGGATTCACTTCTATGCCAAATAAGGAGCATCCTTCATCAGAGCAAGTACGATC ACCAGCTTTGTCATCATTGGAAGACTCTGCTCCTCCCCAACAGGATAATGACATTCCTCC TCCACCACCACCACCAGAAGAGGAATGGATTCCACCTCCACCACCGGAGAATGAACCAGC TCCTCCACCTCCTCCTGAGCCTGAAGAGCCTGCTGTGTCATTTGTTCATGCTGATACACT TCCTCAGCCATACGGAGGTCAAGCAAACTTGGGTTATATGCTTCCAGGAATGGAGTACTA TCCCGCTTCTGGTACAGATGGCACAAATGCCAGCTACTATATGCAAGCGAGCGATTCTCA TATTCTTCAATCGCAGCAGCATTCTTACTACGCACCGTTGTCTGCAAGTGGCGTATCTAT TCCTGTTGAGACCACATCGATCCCCCCAGTACCAGGTTCTTATTATAGCTATCCTTCTGT CACTATGGCTGCCACTGAAGTAGCGGCTGAATCTTCTGGATACTATGGTTCATCAACCTC TGCCATTTCTAGCGGTGAATTAGATAACAAAACAAGCTCAGCCTCCCTTGTTTCAAATAG TAATGTGAATCCTGTGGAGTCTGATAAAGTGATATCCAAGGAGCCTACAGTTGTTTCTTT GAGCCAATCAGTAGGGGCAGCCTCAGCTTCAGCACCAACAGTACATGGTAGTTCTACTCT AGCTTCTACTAGTACCACTAATCAGACTAAAGTTCCTCGTACTAAGAAGCGACCTGTTGC TGTTGCATCATCACTGAGATCTAATAAGAAGGTCTCAAGTCTGGTGGATAAGGTATCTCC CTGACCTCCCAAAGCTGCTGTTAAAATAGTGACCATCTCTGCTCTCTCCTACCCTACCAT CAACTGCTCCCAAGTGTGGTGCTTGACATCAATGAAGAAATTTAACTCACTGCATGATAT GCATTATTGCTAATGGTGTATACTTAGTCGTTGAGACATACTCTTGGTTATGTTATTAGC AAGAGAGCACACTGTCCTCGGCCAGTTTATTTCGTGGTGCACAACATTGGTCCTCCAGAA AAAAAACTCATGCAAGTGGGAGTATGGCCGTGTTTCCTGACTATTTCGTCTCATGTTTAT CATTTCTTATTTTAAAGGCAGAGCAATCTGTTTACATGGTAATTGTGGAAAGCTGCAAAA GAGGAGCTTTGTGATGAAGAGGAAGAGGAGCCTGAAGATGCTTTGGAGTACCTAGAAAGG AAACGTCGGAAGGAAATAGATGGGTGGCGTAAGCAACAAATAGCTAGTGGAGAAGCTAAG GAAAATGCTAATTTTGTTCCCCTTGGCGGTAACTGGCGTGACCGTGTAAAACGCAAAAGA GCTGAAGCAAAGAAGGAAGCAAAGACTGAATCTGTTTGTGCAGCTGCCGAACAACACAAA GGAGAGCCTGATCTCTCAGAGCTTTCCAAGGGTCTCCCTTCTGGGTGGCAGGCATACATA GACGAGTCTACGAAGCAAGTGTACTATGGGAACAACCTCACTTCCGAGACTACTTGGGAT CGGCCTAGCAAATAAAGATTGAACTAGTTGAAGATGGTCCAGTTTTGCTCTGTAGATATC CTCATACATCTATACGTTGCCTGTCTGGTTATGAGGCTGTATTGTTTCTTTTATTTTCCA CTGGGAGATCGTAGCAGGAAGGATACTTCATTTTGGTATATAGAGGCATCCCTTGTAAGA GTGGCAACTTGAGATCGAATTACTGAAGCAAAAAATACTAGTTAGTTGCTGACCAAGGAA AAATGTGCCTTGTTAAGTGGTGGGAGTCTTTA
Protein Sequence (732 aa)
>BART1_0-u51812.041 732 150831_barley_pseudomolecules MGRRKERRLAAKAASGRRVKLDLFLDPSPGEASTKEGVGEENREQQTGVPTSPSSSDKKE NPLALLGQYSDDEEEDEVATDQPNGETKGSSTDASAKVFNDHGDVTGDKGDADSELPASV SVQQEASQADDVKTITENVAEEFTVAPEPTLENECVTVMEAVPDSSGMQIVGDIGGNWKA IMHEQSNQCYYWNTVTGETSWEIPDGLASGVAGDGVTSASVPTHMGYSVEAQAHVLPHSN VEAYPSDVSVGNGTATYTAMGTYTHDAYAYTGAVASHESVDIDPLQLAKYGEDLLQRLKL LERPHVAIDSLELIKREIEIRVADCNALSSYGSSLLPLWLHAEVHLKQLELSVSKFEASY TTRHGYLETVDAGHKAPNEAKVMAPSEGEHLKVDVSTLGIGTGDENIKVEEPCTTSSAQN SQCVAAAILRVESDSDEDMDVDMEVDEEGVEEHGGFTSMPNKEHPSSEQVRSPALSSLED SAPPQQDNDIPPPPPPPEEEWIPPPPPENEPAPPPPPEPEEPAVSFVHADTLPQPYGGQA NLGYMLPGMEYYPASGTDGTNASYYMQASDSHILQSQQHSYYAPLSASGVSIPVETTSIP PVPGSYYSYPSVTMAATEVAAESSGYYGSSTSAISSGELDNKTSSASLVSNSNVNPVESD KVISKEPTVVSLSQSVGAASASAPTVHGSSTLASTSTTNQTKVPRTKKRPVAVASSLRSN KKVSSLVDKVSP