- Transcript BART1_0-u51812.040
- Transcript IDBART1_0-u51812.040
- Gene IDBART1_0-u51812
Barley RTD
Exon Structure of BART1_0-u51812.040
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 140679678 | 140679486 | + |
| chr7H | 2 | 140680403 | 140680127 | + |
| chr7H | 3 | 140680803 | 140680682 | + |
| chr7H | 4 | 140681781 | 140681165 | + |
| chr7H | 5 | 140683083 | 140681885 | + |
| chr7H | 6 | 140684053 | 140683422 | + |
| chr7H | 7 | 140684216 | 140684143 | + |
| chr7H | 8 | 140684701 | 140684566 | + |
| chr7H | 9 | 140685323 | 140684971 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0 | 1.15446 |
| morex | ETI | 0.00000109935 | 0.0000105614 | 0.0000382178 |
| morex | LEA | 0 | 0 | 0 |
| morex | EPI | 4.77848 | 0.0614317 | 0.00147686 |
| morex | ROO | 0 | 0 | 0 |
| morex | ROO2 | 0.00000351667 | 0.00000000104421 | 0 |
| morex | NOD | 0 | 0.000001561 | 0.000000133877 |
| morex | RAC | 0 | 0.0000523716 | 0.366396 |
| morex | INF1 | 0 | 0 | 0 |
| morex | INF2 | 0 | 0 | 0.0115422 |
| morex | CAR5 | 0.00000000050239 | 0.0164977 | 0 |
| morex | CAR15 | 0 | 0.941792 | 0.00246097 |
| morex | LEM | 0.0000000953996 | 0.0000000794294 | 0.00000712318 |
| morex | LOD | 0.000000000676848 | 0.0000000252853 | 0 |
| morex | PAL | 0.000000345468 | 0.434082 | 0.0112108 |
| morex | SEN | 0 | 0.000000170359 | 0.00733174 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os06g19470.2 | +2 | 0.0 | 627 | 432/680 (64%) | protein|WW domain containing protein, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g43210.1.p | +2 | 0.0 | 746 | 500/682 (73%) | pacid=32799652 transcript=Bradi1g43210.1 locus=Bradi1g43210 ID=Bradi1g43210.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3603 bp)
>BART1_0-u51812.040 3603 150831_barley_pseudomolecules CGTAAAACAAAACACCCCGACGTCACCCTCCAAACCCTAACCCTAGAATCTAGAAGACGT CCATCTCCACCCCCGGCGCGCGCCCGACTACTCGGGGCAGCGGCGATGGGGAGGCGGAAG GAGCGCCGCCTGGCGGCCAAGGCGGCCTCGGGCCGTAGGGTCAAGCTCGACCTCTTCCTC GATCCTTCCCCCGGGGAGGCATCTACTAAAGAGGGAGTAGGGGAGGAAAACCGCGAGCAG CAAACTGGTGTTCCCACTTCACCATCTTCGTCAGGTGGGTTCAATCAATTTCCTTCCAAG GGATATGTAAAGACGGCACATGCCTATGGAATGTAAATTTGGTGGAAATTTGGAATTTTG TTCAAGCATGTGTATGCTCCAAATTTCTGGTTTGAGGCACATGTAGGGTTCCCGGCCTGC AAGGAACACTGAGTAAATTCTTCAGATCAGGCTGCCACTGTCAAAACTGGATAAGAAGGA AAATCCTCTAGCGTTGCTTGGGCAATATAGTGATGATGAAGAAGAGGATGAAGTAGCAAC AGATCAACCCAATGGTGAAACTAAGGGAAGTTCAACTGATGCAAGTGCCAAGGTTTTTAA CGATCATGGTGATGTAACTGGGGATAAAGGCGATGCAGATAGTGAACTGCCTGCTTCTGT TAGTGTTCAGCAGGAAGCATCTCAAGCCGATGATGTAAAAACTATCACAGAAAATGTTGC TGAGGAATTTACTGTTGCCCCTGAGCCAACTCTGGAAAATGAGTGTGTGACAGTAATGGA AGCTGTCCCAGATTCATCTGGCATGCAAATCGTGGGTGACATTGGTGGGAATTGGAAGGC TATAATGCATGAACAAAGTAATCAGTGTTACTACTGGAACACAGTTACAGGAGAAACTTC TTGGGAGATTCCTGATGGATTAGCTTCGGGGGTTGCTGGTGATGGAGTCACTTCTGCATC TGTGCCTACTCATATGGGCTACTCTGTAGAAGCTCAAGCACATGTCCTTCCCCACAGCAA TGTTGAAGCATATCCTAGTGATGTATCTGTTGGGAATGGCACAGCAACCTATACTGCTAT GGGAACTTATACTCATGATGCTTATGCTTACACTGGAGCCGTCGCTAGTCATGAGTCAGT GGACATTGACCCCTTGCAGCTTGCAAAATATGGTGAGGATTTACTGCAAAGATTGAAGCT GCTGGAAAGGCCACATGTTGCCATTGACAGTCTTGAGTTGATAAAAAGAGAAATTGAGAT ACGAGTAGCAGACTGTAATGCACTCTCCTCGTATGGATCTTCTTTACTTCCATTGTGGTT GCATGCTGAGGTGCACCTTAAGCAACTAGAACTTTCAGTTTCCAAGTTTGAAGCTAGCTA CACTACCAGACATGGATATCTGGAGACGGTGGATGCAGGACACAAAGCACCTAATGAAGC TAAAGTTATGGCACCCTCCGAGGGTGAGCATTTGAAAGTTGATGTTAGCACTCTGGGAAT TGGTACTGGCGATGAAAATATTAAGGTTGAGGAACCATGTACAACATCATCTGCTCAGAA CTCACAATGTGTGGCAGCAGCTATTTTAAGAGTTGAATCAGACAGTGATGAAGATATGGA CGTGGACATGGAGGTCGATGAAGAAGGTGTTGAAGAGCACGGCGGATTCACTTCTATGCC AAATAAGGAGCATCCTTCATCAGAGCAAGTACGATCACCAGCTTTGTCATCATTGGAAGA CTCTGCTCCTCCCCAACAGGATAATGACATTCCTCCTCCACCACCACCACCAGAAGAGGA ATGGATTCCACCTCCACCACCGGAGAATGAACCAGCTCCTCCACCTCCTCCTGAGCCTGA AGAGCCTGCTGTGTCATTTGTTCATGCTGATACACTTCCTCAGCCATACGGAGGTCAAGC AAACTTGGGTTATATGCTTCCAGGAATGGAGTACTATCCCGCTTCTGGTACAGATGGCAC AAATGCCAGCTACTATATGCAAGCGAGCGATTCTCATATTCTTCAATCGCAGCAGCATTC TTACTACGCACCGTTGTCTGCAAGTGGCGTATCTATTCCTGTTGAGACCACATCGATCCC CCCAGTACCAGGTTCTTATTATAGCTATCCTTCTGTCACTATGGCTGCCACTGAAGTAGC GGCTGAATCTTCTGGATACTATGGTTCATCAACCTCTGCCATTTCTAGCGGTGAATTAGA TAACAAAACAAGCTCAGCCTCCCTTGTTTCAAATAGTAATGTGAATCCTGTGGAGTCTGA TAAAGTGATATCCAAGGAGCCTACAGTTGTTTCTTTGAGCCAATCAGTAGGGGCAGCCTC AGCTTCAGCACCAACAGTACATGGTAGTTCTACTCTAGCTTCTACTAGTACCACTAATCA GACTAAAGTTCCTCGTACTAAGAAGCGACCTGTTGCTGTTGCATCATCACTGAGATCTAA TAAGAAGGTCTCAAGTCTGGTGGATAAGGTATCTCCCTGACCTCCCAAAGCTGCTGTTAA AATAGTGACCATCTCTGCTCTCTCCTACCCTACCATCAACTGCTCCCAAGTGTGGTGCTT GACATCAATGAAGAAATTTAACTCACTGCATGATATGCATTATTGCTAATGGTGTATACT TAGTCGTTGAGACATACTCTTGGTTATGTTATTAGCAAGAGAGCACACTGTCCTCGGCCA GTTTATTTCGTGGTGCACAACATTGGTCCTCCAGAAAAAAAACTCATGCAAGTGGGAGTA TGGCCGTGTTTCCTGACTATTTCGTCTCATGTTTATCATTTCTTATTTTAAAGGCAGAGC AATCTGTTTACATGGTAATTGGTAAGGCTTAAGACAAGGTGAGTGTTGATGTATAATGAT TGTTTCCTTATTAATCTACCTTTACTAAAGCGACCTTTTATTTTATTTTATTTCACTATT ACAGTGGAAAGCTGCAAAAGAGGAGCTTTGTGATGAAGAGGAAGAGGAGCCTGAAGATGC TTTGGAGTACCTAGAAAGGAAACGTCGGAAGGAAATAGATGGGTGGCGTAAGCAACAAAT AGCTAGTGGAGAAGCTAAGGAAAATGCTAATTTTGTTCCCCTTGGCGGTAACTGGCGTGA CCGTGTAAAACGCAAAAGAGCTGAAGCAAAGAAGGAAGCAAAGACTGAATCTGTTTGTGC AGCTGCCGAACAACACAAAGGAGAGCCTGATCTCTCAGAGCTTTCCAAGGGTCTCCCTTC TGGGTGGCAGGCATACATAGACGAGTCTACGAAGCAAGTGTACTATGGGAACAACCTCAC TTCCGAGACTACTTGGGATCGGCCTAGCAAATAAAGATTGAACTAGTTGAAGATGGTCCA GTTTTGCTCTGTAGATATCCTCATACATCTATACGTTGCCTGTCTGGTTATGAGGCTGTA TTGTTTCTTTTATTTTCCACTGGGAGATCGTAGCAGGAAGGATACTTCATTTTGGTATAT AGAGGCATCCCTTGTAAGAGTGGCAACTTGAGATCGAATTACTGAAGCAAAAAATACTAG TTAGTTGCTGACCAAGGAAAAATGTGCCTTGTTAAGTGGTGGGAGTCTTTACCTCGATCT GAT
Protein Sequence (574 aa)
>BART1_0-u51812.040 574 150831_barley_pseudomolecules MEAVPDSSGMQIVGDIGGNWKAIMHEQSNQCYYWNTVTGETSWEIPDGLASGVAGDGVTS ASVPTHMGYSVEAQAHVLPHSNVEAYPSDVSVGNGTATYTAMGTYTHDAYAYTGAVASHE SVDIDPLQLAKYGEDLLQRLKLLERPHVAIDSLELIKREIEIRVADCNALSSYGSSLLPL WLHAEVHLKQLELSVSKFEASYTTRHGYLETVDAGHKAPNEAKVMAPSEGEHLKVDVSTL GIGTGDENIKVEEPCTTSSAQNSQCVAAAILRVESDSDEDMDVDMEVDEEGVEEHGGFTS MPNKEHPSSEQVRSPALSSLEDSAPPQQDNDIPPPPPPPEEEWIPPPPPENEPAPPPPPE PEEPAVSFVHADTLPQPYGGQANLGYMLPGMEYYPASGTDGTNASYYMQASDSHILQSQQ HSYYAPLSASGVSIPVETTSIPPVPGSYYSYPSVTMAATEVAAESSGYYGSSTSAISSGE LDNKTSSASLVSNSNVNPVESDKVISKEPTVVSLSQSVGAASASAPTVHGSSTLASTSTT NQTKVPRTKKRPVAVASSLRSNKKVSSLVDKVSP