Transcript Data
Barley RTD
Links



Exon Structure of BART1_0-u51812.039

ChromosomeExonStartStopDirection
chr7H1140679678140679466+
chr7H2140680474140680127+
chr7H3140680803140680682+
chr7H4140681744140681165+
chr7H5140683083140681885+
chr7H6140684053140683422+
chr7H7140684216140684143+
chr7H8140684701140684566+
chr7H9140685390140684971+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Salmon TPM Values: sixteensamplesmorex

These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials


SampleTreatmentRep 1Rep 2Rep 3
morexEMB0.9735790.000000002380390.00157131
morexETI0.00000001764270.0000000082390.0000250157
morexLEA0.0001142020.00000008722540
morexEPI3.416252.140796.07496
morexROO0.0008345281.018730.0000000028231
morexROO20.05099850.0003571720.0115917
morexNOD2.291561.252784.44594
morexRAC1.578820.0001029250.0768882
morexINF10.1047560.000000007897040.000036847
morexINF20.0000000104940.0000005884851.28676
morexCAR55.326230.000008100350.000000813439
morexCAR150.0004452240.00003594780.000000293568
morexLEM0.005697023.652680.0348283
morexLOD0.00005257722.337690.0032926
morexPAL3.153240.0008488760.00000244441
morexSEN0.000001209150.09816290



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os06g19470.1 +2 2e-167 322 266/430 (62%) protein|WW domain containing protein, expressed
TAIR PP10None-----
BRACH PP3 Bradi1g43210.1.p +2 0.0 400 314/429 (73%) pacid=32799652 transcript=Bradi1g43210.1 locus=Bradi1g43210 ID=Bradi1g43210.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

Click here to see more tracks within GBrowse -->



grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (3724 bp)

>BART1_0-u51812.039 3724 150831_barley_pseudomolecules
CGCACCGCTTCCCTTTTTGCCGTAAAACAAAACACCCCGACGTCACCCTCCAAACCCTAA
CCCTAGAATCTAGAAGACGTCCATCTCCACCCCCGGCGCGCGCCCGACTACTCGGGGCAG
CGGCGATGGGGAGGCGGAAGGAGCGCCGCCTGGCGGCCAAGGCGGCCTCGGGCCGTAGGG
TCAAGCTCGACCTCTTCCTCGATCCTTCCCCCGGGGAGGCATCTACTAAAGAGGGAGTAG
GGGAGGAAAACCGCGAGCAGCAAACTGGTGTTCCCACTTCACCATCTTCGTCAGGTGGGT
TCAATCAATTTCCTTCCAAGGGATATGTAAAGACGGCACATGCCTATGGAATGTAAATTT
GGTGGAAATTTGGAATTTTGTTCAAGCATGTGTATGCTCCAAATTTCTGGTTTGAGGCAC
ATGTAGGGTTCCCGGCCTGCAAGGAACACTGAGTAAATTCTTCAGATCAGGCTGCCACTG
TCAAAACTGGGTGTGTTCCTACCGGTAATTTCTCTTTTGGCAGCATCTGAGCGTGGGGAT
TTCAGGATGATTGTTGCCTCGATAAGAAGGAAAATCCTCTAGCGTTGCTTGGGCAATATA
GTGATGATGAAGAAGAGGATGAAGTAGCAACAGATCAACCCAATGGTGAAACTAAGGGAA
GTTCAACTGATGCAAGTGCCAAGGTTTTTAACGATCATGGTGATGTAACTGGGGATAAAG
GCGATGCAGATAGTGAACTGCCTGCTTCTGTTAGTGTTCAGCAGGAAGCATCTCAAGCCG
ATGATGTAAAAACTATCACAGAAAATGTTGCTGAGGAATTTACTGTTGCCCCTGAGCCAA
CTCTGGAAAATGAGTGTGTGACAGTAATGGAAGCTGTCCCAGATTCATCTGGCATGCAAA
TCGTGGGTGACATTGGTGGGAATTGGAAGGCTATAATGCATGAACAAAGTAATCAGTGTT
ACTACTGGAACACAGTTACAGGAGAAACTTCTTGGGAGATTCCTGATGGATTAGCTTCGG
GGGTTGCTGGTGATGGAGTCACTTCTGCATCTGTGCCTACTCATATGGGCTACTCTGTAG
AAGCTCAAGCACATGTCCTTCCCCACAGCAATGTTGAAGCATATCCTAGTGATGTATCTG
TTGGGAATGGCACAGCAACCTATACTGCTATGGGAACTTATACTCATGATGCTTATGCTT
ACACTGGAGCCGTCGCTAGTCATGAGTCAGTGGACATTGACCCCTTGCAGCTTGCAAAAT
ATGGCCACATGTTGCCATTGACAGTCTTGAGTTGATAAAAAGAGAAATTGAGATACGAGT
AGCAGACTGTAATGCACTCTCCTCGTATGGATCTTCTTTACTTCCATTGTGGTTGCATGC
TGAGGTGCACCTTAAGCAACTAGAACTTTCAGTTTCCAAGTTTGAAGCTAGCTACACTAC
CAGACATGGATATCTGGAGACGGTGGATGCAGGACACAAAGCACCTAATGAAGCTAAAGT
TATGGCACCCTCCGAGGGTGAGCATTTGAAAGTTGATGTTAGCACTCTGGGAATTGGTAC
TGGCGATGAAAATATTAAGGTTGAGGAACCATGTACAACATCATCTGCTCAGAACTCACA
ATGTGTGGCAGCAGCTATTTTAAGAGTTGAATCAGACAGTGATGAAGATATGGACGTGGA
CATGGAGGTCGATGAAGAAGGTGTTGAAGAGCACGGCGGATTCACTTCTATGCCAAATAA
GGAGCATCCTTCATCAGAGCAAGTACGATCACCAGCTTTGTCATCATTGGAAGACTCTGC
TCCTCCCCAACAGGATAATGACATTCCTCCTCCACCACCACCACCAGAAGAGGAATGGAT
TCCACCTCCACCACCGGAGAATGAACCAGCTCCTCCACCTCCTCCTGAGCCTGAAGAGCC
TGCTGTGTCATTTGTTCATGCTGATACACTTCCTCAGCCATACGGAGGTCAAGCAAACTT
GGGTTATATGCTTCCAGGAATGGAGTACTATCCCGCTTCTGGTACAGATGGCACAAATGC
CAGCTACTATATGCAAGCGAGCGATTCTCATATTCTTCAATCGCAGCAGCATTCTTACTA
CGCACCGTTGTCTGCAAGTGGCGTATCTATTCCTGTTGAGACCACATCGATCCCCCCAGT
ACCAGGTTCTTATTATAGCTATCCTTCTGTCACTATGGCTGCCACTGAAGTAGCGGCTGA
ATCTTCTGGATACTATGGTTCATCAACCTCTGCCATTTCTAGCGGTGAATTAGATAACAA
AACAAGCTCAGCCTCCCTTGTTTCAAATAGTAATGTGAATCCTGTGGAGTCTGATAAAGT
GATATCCAAGGAGCCTACAGTTGTTTCTTTGAGCCAATCAGTAGGGGCAGCCTCAGCTTC
AGCACCAACAGTACATGGTAGTTCTACTCTAGCTTCTACTAGTACCACTAATCAGACTAA
AGTTCCTCGTACTAAGAAGCGACCTGTTGCTGTTGCATCATCACTGAGATCTAATAAGAA
GGTCTCAAGTCTGGTGGATAAGGTATCTCCCTGACCTCCCAAAGCTGCTGTTAAAATAGT
GACCATCTCTGCTCTCTCCTACCCTACCATCAACTGCTCCCAAGTGTGGTGCTTGACATC
AATGAAGAAATTTAACTCACTGCATGATATGCATTATTGCTAATGGTGTATACTTAGTCG
TTGAGACATACTCTTGGTTATGTTATTAGCAAGAGAGCACACTGTCCTCGGCCAGTTTAT
TTCGTGGTGCACAACATTGGTCCTCCAGAAAAAAAACTCATGCAAGTGGGAGTATGGCCG
TGTTTCCTGACTATTTCGTCTCATGTTTATCATTTCTTATTTTAAAGGCAGAGCAATCTG
TTTACATGGTAATTGGTAAGGCTTAAGACAAGGTGAGTGTTGATGTATAATGATTGTTTC
CTTATTAATCTACCTTTACTAAAGCGACCTTTTATTTTATTTTATTTCACTATTACAGTG
GAAAGCTGCAAAAGAGGAGCTTTGTGATGAAGAGGAAGAGGAGCCTGAAGATGCTTTGGA
GTACCTAGAAAGGAAACGTCGGAAGGAAATAGATGGGTGGCGTAAGCAACAAATAGCTAG
TGGAGAAGCTAAGGAAAATGCTAATTTTGTTCCCCTTGGCGGTAACTGGCGTGACCGTGT
AAAACGCAAAAGAGCTGAAGCAAAGAAGGAAGCAAAGACTGAATCTGTTTGTGCAGCTGC
CGAACAACACAAAGGAGAGCCTGATCTCTCAGAGCTTTCCAAGGGTCTCCCTTCTGGGTG
GCAGGCATACATAGACGAGTCTACGAAGCAAGTGTACTATGGGAACAACCTCACTTCCGA
GACTACTTGGGATCGGCCTAGCAAATAAAGATTGAACTAGTTGAAGATGGTCCAGTTTTG
CTCTGTAGATATCCTCATACATCTATACGTTGCCTGTCTGGTTATGAGGCTGTATTGTTT
CTTTTATTTTCCACTGGGAGATCGTAGCAGGAAGGATACTTCATTTTGGTATATAGAGGC
ATCCCTTGTAAGAGTGGCAACTTGAGATCGAATTACTGAAGCAAAAAATACTAGTTAGTT
GCTGACCAAGGAAAAATGTGCCTTGTTAAGTGGTGGGAGTCTTTACCTCGATCTGATACC
ATTTGCTTTCAAAACAATGTCAATTATATTCGATTTTAGGTTGTGCTAAATTCTAGACTT
CTCC



Protein Sequence (350 aa)

>BART1_0-u51812.039 350 150831_barley_pseudomolecules
MAPSEGEHLKVDVSTLGIGTGDENIKVEEPCTTSSAQNSQCVAAAILRVESDSDEDMDVD
MEVDEEGVEEHGGFTSMPNKEHPSSEQVRSPALSSLEDSAPPQQDNDIPPPPPPPEEEWI
PPPPPENEPAPPPPPEPEEPAVSFVHADTLPQPYGGQANLGYMLPGMEYYPASGTDGTNA
SYYMQASDSHILQSQQHSYYAPLSASGVSIPVETTSIPPVPGSYYSYPSVTMAATEVAAE
SSGYYGSSTSAISSGELDNKTSSASLVSNSNVNPVESDKVISKEPTVVSLSQSVGAASAS
APTVHGSSTLASTSTTNQTKVPRTKKRPVAVASSLRSNKKVSSLVDKVSP