- Transcript BART1_0-u51812.035
- Transcript IDBART1_0-u51812.035
- Gene IDBART1_0-u51812
Barley RTD
Exon Structure of BART1_0-u51812.035
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 140679678 | 140679423 | + |
| chr7H | 2 | 140680207 | 140680127 | + |
| chr7H | 3 | 140680474 | 140680340 | + |
| chr7H | 4 | 140680803 | 140680682 | + |
| chr7H | 5 | 140681781 | 140681165 | + |
| chr7H | 6 | 140683083 | 140681885 | + |
| chr7H | 7 | 140684053 | 140683422 | + |
| chr7H | 8 | 140684216 | 140684143 | + |
| chr7H | 9 | 140684701 | 140684566 | + |
| chr7H | 10 | 140685265 | 140684971 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.580659 | 0 | 0 |
| morex | ETI | 2.25908 | 3.59158 | 8.20811 |
| morex | LEA | 0.834192 | 0.000000113097 | 0.00283973 |
| morex | EPI | 5.29462 | 0.245294 | 2.48163 |
| morex | ROO | 0 | 0.662333 | 0.543467 |
| morex | ROO2 | 0 | 0.00156932 | 1.07076 |
| morex | NOD | 0.46731 | 4.29886 | 0.398519 |
| morex | RAC | 0.137116 | 2.80452 | 1.5305 |
| morex | INF1 | 2.06421 | 0.800033 | 4.37788 |
| morex | INF2 | 11.8167 | 5.11764 | 6.85723 |
| morex | CAR5 | 0.560829 | 3.64982 | 1.93651 |
| morex | CAR15 | 0.317952 | 0.610197 | 0 |
| morex | LEM | 8.15782 | 4.37721 | 5.89906 |
| morex | LOD | 1.23456 | 3.48022 | 1.16266 |
| morex | PAL | 1.61171 | 1.29492 | 3.32346 |
| morex | SEN | 0.00000090465 | 2.50194 | 1.52081 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os06g19470.2 | +1 | 0.0 | 661 | 461/763 (60%) | protein|WW domain containing protein, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g43210.1.p | +1 | 0.0 | 799 | 537/769 (70%) | pacid=32799652 transcript=Bradi1g43210.1 locus=Bradi1g43210 ID=Bradi1g43210.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3547 bp)
>BART1_0-u51812.035 3547 150831_barley_pseudomolecules CCGCCTACCGCCAGCTCCCTCCACTTCGCCTCTCCTCCTGATTCGCACCGCTTCCCTTTT TGCCGTAAAACAAAACACCCCGACGTCACCCTCCAAACCCTAACCCTAGAATCTAGAAGA CGTCCATCTCCACCCCCGGCGCGCGCCCGACTACTCGGGGCAGCGGCGATGGGGAGGCGG AAGGAGCGCCGCCTGGCGGCCAAGGCGGCCTCGGGCCGTAGGGTCAAGCTCGACCTCTTC CTCGATCCTTCCCCCGGGGAGGCATCTACTAAAGAGGGAGTAGGGGAGGAAAACCGCGAG CAGCAAACTGGTGTTCCCACTTCACCATCTTCGTCAGGGTTCCCGGCCTGCAAGGAACAC TGAGTAAATTCTTCAGATCAGGCTGCCACTGTCAAAACTGGGTGTGTTCCTACCGGTAAT TTCTCTTTTGGCAGCATCTGAGCGTGGGGATTTCAGGATGATTGTTGCCTCGATAAGAAG GAAAATCCTCTAGCGTTGCTTGGGCAATATAGTGATGATGAAGAAGAGGATGAAGTAGCA ACAGATCAACCCAATGGTGAAACTAAGGGAAGTTCAACTGATGCAAGTGCCAAGGTTTTT AACGATCATGGTGATGTAACTGGGGATAAAGGCGATGCAGATAGTGAACTGCCTGCTTCT GTTAGTGTTCAGCAGGAAGCATCTCAAGCCGATGATGTAAAAACTATCACAGAAAATGTT GCTGAGGAATTTACTGTTGCCCCTGAGCCAACTCTGGAAAATGAGTGTGTGACAGTAATG GAAGCTGTCCCAGATTCATCTGGCATGCAAATCGTGGGTGACATTGGTGGGAATTGGAAG GCTATAATGCATGAACAAAGTAATCAGTGTTACTACTGGAACACAGTTACAGGAGAAACT TCTTGGGAGATTCCTGATGGATTAGCTTCGGGGGTTGCTGGTGATGGAGTCACTTCTGCA TCTGTGCCTACTCATATGGGCTACTCTGTAGAAGCTCAAGCACATGTCCTTCCCCACAGC AATGTTGAAGCATATCCTAGTGATGTATCTGTTGGGAATGGCACAGCAACCTATACTGCT ATGGGAACTTATACTCATGATGCTTATGCTTACACTGGAGCCGTCGCTAGTCATGAGTCA GTGGACATTGACCCCTTGCAGCTTGCAAAATATGGTGAGGATTTACTGCAAAGATTGAAG CTGCTGGAAAGGCCACATGTTGCCATTGACAGTCTTGAGTTGATAAAAAGAGAAATTGAG ATACGAGTAGCAGACTGTAATGCACTCTCCTCGTATGGATCTTCTTTACTTCCATTGTGG TTGCATGCTGAGGTGCACCTTAAGCAACTAGAACTTTCAGTTTCCAAGTTTGAAGCTAGC TACACTACCAGACATGGATATCTGGAGACGGTGGATGCAGGACACAAAGCACCTAATGAA GCTAAAGTTATGGCACCCTCCGAGGGTGAGCATTTGAAAGTTGATGTTAGCACTCTGGGA ATTGGTACTGGCGATGAAAATATTAAGGTTGAGGAACCATGTACAACATCATCTGCTCAG AACTCACAATGTGTGGCAGCAGCTATTTTAAGAGTTGAATCAGACAGTGATGAAGATATG GACGTGGACATGGAGGTCGATGAAGAAGGTGTTGAAGAGCACGGCGGATTCACTTCTATG CCAAATAAGGAGCATCCTTCATCAGAGCAAGTACGATCACCAGCTTTGTCATCATTGGAA GACTCTGCTCCTCCCCAACAGGATAATGACATTCCTCCTCCACCACCACCACCAGAAGAG GAATGGATTCCACCTCCACCACCGGAGAATGAACCAGCTCCTCCACCTCCTCCTGAGCCT GAAGAGCCTGCTGTGTCATTTGTTCATGCTGATACACTTCCTCAGCCATACGGAGGTCAA GCAAACTTGGGTTATATGCTTCCAGGAATGGAGTACTATCCCGCTTCTGGTACAGATGGC ACAAATGCCAGCTACTATATGCAAGCGAGCGATTCTCATATTCTTCAATCGCAGCAGCAT TCTTACTACGCACCGTTGTCTGCAAGTGGCGTATCTATTCCTGTTGAGACCACATCGATC CCCCCAGTACCAGGTTCTTATTATAGCTATCCTTCTGTCACTATGGCTGCCACTGAAGTA GCGGCTGAATCTTCTGGATACTATGGTTCATCAACCTCTGCCATTTCTAGCGGTGAATTA GATAACAAAACAAGCTCAGCCTCCCTTGTTTCAAATAGTAATGTGAATCCTGTGGAGTCT GATAAAGTGATATCCAAGGAGCCTACAGTTGTTTCTTTGAGCCAATCAGTAGGGGCAGCC TCAGCTTCAGCACCAACAGTACATGGTAGTTCTACTCTAGCTTCTACTAGTACCACTAAT CAGACTAAAGTTCCTCGTACTAAGAAGCGACCTGTTGCTGTTGCATCATCACTGAGATCT AATAAGAAGGTCTCAAGTCTGGTGGATAAGGTATCTCCCTGACCTCCCAAAGCTGCTGTT AAAATAGTGACCATCTCTGCTCTCTCCTACCCTACCATCAACTGCTCCCAAGTGTGGTGC TTGACATCAATGAAGAAATTTAACTCACTGCATGATATGCATTATTGCTAATGGTGTATA CTTAGTCGTTGAGACATACTCTTGGTTATGTTATTAGCAAGAGAGCACACTGTCCTCGGC CAGTTTATTTCGTGGTGCACAACATTGGTCCTCCAGAAAAAAAACTCATGCAAGTGGGAG TATGGCCGTGTTTCCTGACTATTTCGTCTCATGTTTATCATTTCTTATTTTAAAGGCAGA GCAATCTGTTTACATGGTAATTGGTAAGGCTTAAGACAAGGTGAGTGTTGATGTATAATG ATTGTTTCCTTATTAATCTACCTTTACTAAAGCGACCTTTTATTTTATTTTATTTCACTA TTACAGTGGAAAGCTGCAAAAGAGGAGCTTTGTGATGAAGAGGAAGAGGAGCCTGAAGAT GCTTTGGAGTACCTAGAAAGGAAACGTCGGAAGGAAATAGATGGGTGGCGTAAGCAACAA ATAGCTAGTGGAGAAGCTAAGGAAAATGCTAATTTTGTTCCCCTTGGCGGTAACTGGCGT GACCGTGTAAAACGCAAAAGAGCTGAAGCAAAGAAGGAAGCAAAGACTGAATCTGTTTGT GCAGCTGCCGAACAACACAAAGGAGAGCCTGATCTCTCAGAGCTTTCCAAGGGTCTCCCT TCTGGGTGGCAGGCATACATAGACGAGTCTACGAAGCAAGTGTACTATGGGAACAACCTC ACTTCCGAGACTACTTGGGATCGGCCTAGCAAATAAAGATTGAACTAGTTGAAGATGGTC CAGTTTTGCTCTGTAGATATCCTCATACATCTATACGTTGCCTGTCTGGTTATGAGGCTG TATTGTTTCTTTTATTTTCCACTGGGAGATCGTAGCAGGAAGGATACTTCATTTTGGTAT ATAGAGGCATCCCTTGTAAGAGTGGCAACTTGAGATCGAATTACTGAAGCAAAAAATACT AGTTAGT
Protein Sequence (574 aa)
>BART1_0-u51812.035 574 150831_barley_pseudomolecules MEAVPDSSGMQIVGDIGGNWKAIMHEQSNQCYYWNTVTGETSWEIPDGLASGVAGDGVTS ASVPTHMGYSVEAQAHVLPHSNVEAYPSDVSVGNGTATYTAMGTYTHDAYAYTGAVASHE SVDIDPLQLAKYGEDLLQRLKLLERPHVAIDSLELIKREIEIRVADCNALSSYGSSLLPL WLHAEVHLKQLELSVSKFEASYTTRHGYLETVDAGHKAPNEAKVMAPSEGEHLKVDVSTL GIGTGDENIKVEEPCTTSSAQNSQCVAAAILRVESDSDEDMDVDMEVDEEGVEEHGGFTS MPNKEHPSSEQVRSPALSSLEDSAPPQQDNDIPPPPPPPEEEWIPPPPPENEPAPPPPPE PEEPAVSFVHADTLPQPYGGQANLGYMLPGMEYYPASGTDGTNASYYMQASDSHILQSQQ HSYYAPLSASGVSIPVETTSIPPVPGSYYSYPSVTMAATEVAAESSGYYGSSTSAISSGE LDNKTSSASLVSNSNVNPVESDKVISKEPTVVSLSQSVGAASASAPTVHGSSTLASTSTT NQTKVPRTKKRPVAVASSLRSNKKVSSLVDKVSP