- Transcript BART1_0-u51812.030
- Transcript IDBART1_0-u51812.030
- Gene IDBART1_0-u51812
Barley RTD
Exon Structure of BART1_0-u51812.030
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 140679678 | 140679416 | + |
| chr7H | 2 | 140680474 | 140680127 | + |
| chr7H | 3 | 140680803 | 140680682 | + |
| chr7H | 4 | 140681781 | 140681165 | + |
| chr7H | 5 | 140683083 | 140681885 | + |
| chr7H | 6 | 140683501 | 140683179 | + |
| chr7H | 7 | 140683871 | 140683827 | + |
| chr7H | 8 | 140684053 | 140683958 | + |
| chr7H | 9 | 140684216 | 140684143 | + |
| chr7H | 10 | 140684701 | 140684566 | + |
| chr7H | 11 | 140685418 | 140684971 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0 | 0 |
| morex | ETI | 0 | 0.0274762 | 0.0587425 |
| morex | LEA | 0 | 0.0000000098204 | 0.00000180122 |
| morex | EPI | 0 | 0 | 0 |
| morex | ROO | 0 | 0 | 0 |
| morex | ROO2 | 0.615486 | 0 | 0.269293 |
| morex | NOD | 0 | 0 | 0 |
| morex | RAC | 0 | 0 | 0 |
| morex | INF1 | 0 | 0 | 0 |
| morex | INF2 | 0.612986 | 0 | 1.40038 |
| morex | CAR5 | 0 | 0 | 0 |
| morex | CAR15 | 0 | 0 | 0 |
| morex | LEM | 0.0666216 | 0 | 0 |
| morex | LOD | 0 | 0 | 0.0866742 |
| morex | PAL | 0 | 0.0274692 | 0.0684757 |
| morex | SEN | 0 | 0 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os06g19470.2 | +2 | 0.0 | 588 | 415/673 (62%) | protein|WW domain containing protein, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g43210.1.p | +2 | 0.0 | 700 | 479/675 (71%) | pacid=32799652 transcript=Bradi1g43210.1 locus=Bradi1g43210 ID=Bradi1g43210.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3671 bp)
>BART1_0-u51812.030 3671 150831_barley_pseudomolecules CGGACACCCGCCTACCGCCAGCTCCCTCCACTTCGCCTCTCCTCCTGATTCGCACCGCTT CCCTTTTTGCCGTAAAACAAAACACCCCGACGTCACCCTCCAAACCCTAACCCTAGAATC TAGAAGACGTCCATCTCCACCCCCGGCGCGCGCCCGACTACTCGGGGCAGCGGCGATGGG GAGGCGGAAGGAGCGCCGCCTGGCGGCCAAGGCGGCCTCGGGCCGTAGGGTCAAGCTCGA CCTCTTCCTCGATCCTTCCCCCGGGGAGGCATCTACTAAAGAGGGAGTAGGGGAGGAAAA CCGCGAGCAGCAAACTGGTGTTCCCACTTCACCATCTTCGTCAGGTGGGTTCAATCAATT TCCTTCCAAGGGATATGTAAAGACGGCACATGCCTATGGAATGTAAATTTGGTGGAAATT TGGAATTTTGTTCAAGCATGTGTATGCTCCAAATTTCTGGTTTGAGGCACATGTAGGGTT CCCGGCCTGCAAGGAACACTGAGTAAATTCTTCAGATCAGGCTGCCACTGTCAAAACTGG GTGTGTTCCTACCGGTAATTTCTCTTTTGGCAGCATCTGAGCGTGGGGATTTCAGGATGA TTGTTGCCTCGATAAGAAGGAAAATCCTCTAGCGTTGCTTGGGCAATATAGTGATGATGA AGAAGAGGATGAAGTAGCAACAGATCAACCCAATGGTGAAACTAAGGGAAGTTCAACTGA TGCAAGTGCCAAGGTTTTTAACGATCATGGTGATGTAACTGGGGATAAAGGCGATGCAGA TAGTGAACTGCCTGCTTCTGTTAGTGTTCAGCAGGAAGCATCTCAAGCCGATGATGTAAA AACTATCACAGAAAATGTTGCTGAGGAATTTACTGTTGCCCCTGAGCCAACTCTGGAAAA TGAGTGTGTGACAGTAATGGAAGCTGTCCCAGATTCATCTGGCATGCAAATCGTGGGTGA CATTGGTGGGAATTGGAAGGCTATAATGCATGAACAAAGTAATCAGTGTTACTACTGGAA CACAGTTACAGGAGAAACTTCTTGGGAGATTCCTGATGGATTAGCTTCGGGGGTTGCTGG TGATGGAGTCACTTCTGCATCTGTGCCTACTCATATGGGCTACTCTGTAGAAGCTCAAGC ACATGTCCTTCCCCACAGCAATGTTGAAGCATATCCTAGTGATGTATCTGTTGGGAATGG CACAGCAACCTATACTGCTATGGGAACTTATACTCATGATGCTTATGCTTACACTGGAGC CGTCGCTAGTCATGAGTCAGTGGACATTGACCCCTTGCAGCTTGCAAAATATGGTGAGGA TTTACTGCAAAGATTGAAGCTGCTGGAAAGGCCACATGTTGCCATTGACAGTCTTGAGTT GATAAAAAGAGAAATTGAGATACGAGTAGCAGACTGTAATGCACTCTCCTCGTATGGATC TTCTTTACTTCCATTGTGGTTGCATGCTGAGGTGCACCTTAAGCAACTAGAACTTTCAGT TTCCAAGTTTGAAGCTAGCTACACTACCAGACATGGATATCTGGAGACGGTGGATGCAGG ACACAAAGCACCTAATGAAGCTAAAGTTATGGCACCCTCCGAGGGTGAGCATTTGAAAGT TGATGTTAGCACTCTGGGAATTGGTACTGGCGATGAAAATATTAAGGTTGAGGAACCATG TACAACATCATCTGCTCAGAACTCACAATGTGTGGCAGCAGCTATTTTAAGAGTTGAATC AGACAGTGATGAAGATATGGACGTGGACATGGAGGTCGATGAAGAAGGTGTTGAAGAGCA CGGCGGATTCACTTCTATGCCAAATAAGGAGCATCCTTCATCAGAGCAAGTACGATCACC AGCTTTGTCATCATTGGAAGACTCTGCTCCTCCCCAACAGGATAATGACATTCCTCCTCC ACCACCACCACCAGAAGAGGAATGGATTCCACCTCCACCACCGGAGAATGAACCAGCTCC TCCACCTCCTCCTGAGCCTGAAGAGCCTGCTGTGTCATTTGTTCATGCTGATACACTTCC TCAGCCATACGGAGGTCAAGCAAACTTGGGTTATATGCTTCCAGGAATGGAGTACTATCC CGCTTCTGGTACAGATGGCACAAATGCCAGCTACTATATGCAAGCGAGCGATTCTCATAT TCTTCAATCGCAGCAGCATTCTTACTACGCACCGTTGTCTGCAAGTGGCGTATCTATTCC TGTTGAGACCACATCGATCCCCCCAGTACCAGGTTCTTATTATAGCTATCCTTCTGTCAC TATGGCTGCCACTGAAGTAGCGGCTGAATCTTCTGGATACTATGGTTCATCAACCTCTGC CATTTCTAGCGGTGAATTAGATAACAAAACAAGCTCAGCCTCCCTTGTTTCAAATAGTAA TGTGAATCCTGTGGAGTCTGATAAAGTGATATCCAAGGAGCCTACAGTTGTTTCTTTGAG CCAATCAGTAGGGGCAGCCTCAGCTTCAGCACCAACAGTACATGGTAGTTCTACTCTAGC TTCTACTAGTACCACTAATCAGACTAAAGGTAATTTATTATTCTTTGCAAGGATACTTAA TGTTACTAGCTCGTACTCCCTCCGTTCCTAAATATAAGTCCTTTTAGAGGTTCTACTAGG GGATTACATACGAATGTATATAGACATACTTTAGAGTGTAGATTCTTTCATTTTGCTCCG TATGTAGTCCTCTAATGAAATCTTTAAAAAGACTTATATTTAGGAACGGAGGGAGTAGTT GTTTTAGTTTTGACATTTGCACTGATTTGCAGTTCCTCGTACTAAGAAGCGACCTGTTGC TGTTGCATCATCACTGAGATCTAATAAGAAGGTCTCAAGTCTGGTGGATAAGGCAGAGCA ATCTGTTTACATGGTAATTGGTAAGGCTTAAGACAAGTGGAAAGCTGCAAAAGAGGAGCT TTGTGATGAAGAGGAAGAGGAGCCTGAAGATGCTTTGGAGTACCTAGAAAGGAAACGTCG GAAGGAAATAGATGGGTGGCGTAAGCAACAAATAGCTAGTGGAGAAGCTAAGGAAAATGC TAATTTTGTTCCCCTTGGCGGTAACTGGCGTGACCGTGTAAAACGCAAAAGAGCTGAAGC AAAGAAGGAAGCAAAGACTGAATCTGTTTGTGCAGCTGCCGAACAACACAAAGGAGAGCC TGATCTCTCAGAGCTTTCCAAGGGTCTCCCTTCTGGGTGGCAGGCATACATAGACGAGTC TACGAAGCAAGTGTACTATGGGAACAACCTCACTTCCGAGACTACTTGGGATCGGCCTAG CAAATAAAGATTGAACTAGTTGAAGATGGTCCAGTTTTGCTCTGTAGATATCCTCATACA TCTATACGTTGCCTGTCTGGTTATGAGGCTGTATTGTTTCTTTTATTTTCCACTGGGAGA TCGTAGCAGGAAGGATACTTCATTTTGGTATATAGAGGCATCCCTTGTAAGAGTGGCAAC TTGAGATCGAATTACTGAAGCAAAAAATACTAGTTAGTTGCTGACCAAGGAAAAATGTGC CTTGTTAAGTGGTGGGAGTCTTTACCTCGATCTGATACCATTTGCTTTCAAAACAATGTC AATTATATTCGATTTTAGGTTGTGCTAAATTCTAGACTTCTCCAATTATTTAACATTAGA AAGAAAGATGA
Protein Sequence (564 aa)
>BART1_0-u51812.030 564 150831_barley_pseudomolecules MEAVPDSSGMQIVGDIGGNWKAIMHEQSNQCYYWNTVTGETSWEIPDGLASGVAGDGVTS ASVPTHMGYSVEAQAHVLPHSNVEAYPSDVSVGNGTATYTAMGTYTHDAYAYTGAVASHE SVDIDPLQLAKYGEDLLQRLKLLERPHVAIDSLELIKREIEIRVADCNALSSYGSSLLPL WLHAEVHLKQLELSVSKFEASYTTRHGYLETVDAGHKAPNEAKVMAPSEGEHLKVDVSTL GIGTGDENIKVEEPCTTSSAQNSQCVAAAILRVESDSDEDMDVDMEVDEEGVEEHGGFTS MPNKEHPSSEQVRSPALSSLEDSAPPQQDNDIPPPPPPPEEEWIPPPPPENEPAPPPPPE PEEPAVSFVHADTLPQPYGGQANLGYMLPGMEYYPASGTDGTNASYYMQASDSHILQSQQ HSYYAPLSASGVSIPVETTSIPPVPGSYYSYPSVTMAATEVAAESSGYYGSSTSAISSGE LDNKTSSASLVSNSNVNPVESDKVISKEPTVVSLSQSVGAASASAPTVHGSSTLASTSTT NQTKGNLLFFARILNVTSSYSLRS