- Transcript BART1_0-u51812.028
- Transcript IDBART1_0-u51812.028
- Gene IDBART1_0-u51812
Barley RTD
Exon Structure of BART1_0-u51812.028
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 140679678 | 140679416 | + |
| chr7H | 2 | 140680478 | 140680127 | + |
| chr7H | 3 | 140680803 | 140680682 | + |
| chr7H | 4 | 140681781 | 140681165 | + |
| chr7H | 5 | 140683083 | 140681885 | + |
| chr7H | 6 | 140683501 | 140683422 | + |
| chr7H | 7 | 140683871 | 140683827 | + |
| chr7H | 8 | 140684053 | 140683958 | + |
| chr7H | 9 | 140684216 | 140684143 | + |
| chr7H | 10 | 140684701 | 140684566 | + |
| chr7H | 11 | 140685390 | 140684971 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.00102299 | 0.0629166 | 0 |
| morex | ETI | 0.00820149 | 0.0251478 | 0 |
| morex | LEA | 0 | 0.297837 | 0 |
| morex | EPI | 0 | 0 | 0.00263701 |
| morex | ROO | 0.318054 | 0 | 0.00000000919129 |
| morex | ROO2 | 0 | 0.201136 | 0.0474364 |
| morex | NOD | 0 | 0.340284 | 0 |
| morex | RAC | 0.0189978 | 0.00187958 | 0.0028674 |
| morex | INF1 | 0.0064723 | 0.0000000239256 | 0.00000000268572 |
| morex | INF2 | 0.000583342 | 0.0257242 | 0.0210351 |
| morex | CAR5 | 0 | 0.00511582 | 0 |
| morex | CAR15 | 0 | 0.0000000166548 | 0 |
| morex | LEM | 0.0276984 | 0 | 0.0435547 |
| morex | LOD | 0.00135453 | 0 | 0.0038427 |
| morex | PAL | 0.231109 | 0.00839474 | 0 |
| morex | SEN | 0 | 0 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os06g19470.2 | +3 | 0.0 | 769 | 532/831 (64%) | protein|WW domain containing protein, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g43210.1.p | +3 | 0.0 | 907 | 611/830 (74%) | pacid=32799652 transcript=Bradi1g43210.1 locus=Bradi1g43210 ID=Bradi1g43210.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3404 bp)
>BART1_0-u51812.028 3404 150831_barley_pseudomolecules CGGACACCCGCCTACCGCCAGCTCCCTCCACTTCGCCTCTCCTCCTGATTCGCACCGCTT CCCTTTTTGCCGTAAAACAAAACACCCCGACGTCACCCTCCAAACCCTAACCCTAGAATC TAGAAGACGTCCATCTCCACCCCCGGCGCGCGCCCGACTACTCGGGGCAGCGGCGATGGG GAGGCGGAAGGAGCGCCGCCTGGCGGCCAAGGCGGCCTCGGGCCGTAGGGTCAAGCTCGA CCTCTTCCTCGATCCTTCCCCCGGGGAGGCATCTACTAAAGAGGGAGTAGGGGAGGAAAA CCGCGAGCAGCAAACTGGTGTTCCCACTTCACCATCTTCGTCAGGTGGGTTCAATCAATT TCCTTCCAAGGGATATGTAAAGACGGCACATGCCTATGGAATGTAAATTTGGTGGAAATT TGGAATTTTGTTCAAGCATGTGTATGCTCCAAATTTCTGGTTTGAGGCACATGTAGGGTT CCCGGCCTGCAAGGAACACTGAGTAAATTCTTCAGATCAGGCTGCCACTGTCAAAACTGG GTGTGTTCCTACCGGTAATTTCTCTTTTGGCAGCATCTGAGCGTGGGGATTTCAGGATGA TTGTTGCCTCGGTTCATAAGAAGGAAAATCCTCTAGCGTTGCTTGGGCAATATAGTGATG ATGAAGAAGAGGATGAAGTAGCAACAGATCAACCCAATGGTGAAACTAAGGGAAGTTCAA CTGATGCAAGTGCCAAGGTTTTTAACGATCATGGTGATGTAACTGGGGATAAAGGCGATG CAGATAGTGAACTGCCTGCTTCTGTTAGTGTTCAGCAGGAAGCATCTCAAGCCGATGATG TAAAAACTATCACAGAAAATGTTGCTGAGGAATTTACTGTTGCCCCTGAGCCAACTCTGG AAAATGAGTGTGTGACAGTAATGGAAGCTGTCCCAGATTCATCTGGCATGCAAATCGTGG GTGACATTGGTGGGAATTGGAAGGCTATAATGCATGAACAAAGTAATCAGTGTTACTACT GGAACACAGTTACAGGAGAAACTTCTTGGGAGATTCCTGATGGATTAGCTTCGGGGGTTG CTGGTGATGGAGTCACTTCTGCATCTGTGCCTACTCATATGGGCTACTCTGTAGAAGCTC AAGCACATGTCCTTCCCCACAGCAATGTTGAAGCATATCCTAGTGATGTATCTGTTGGGA ATGGCACAGCAACCTATACTGCTATGGGAACTTATACTCATGATGCTTATGCTTACACTG GAGCCGTCGCTAGTCATGAGTCAGTGGACATTGACCCCTTGCAGCTTGCAAAATATGGTG AGGATTTACTGCAAAGATTGAAGCTGCTGGAAAGGCCACATGTTGCCATTGACAGTCTTG AGTTGATAAAAAGAGAAATTGAGATACGAGTAGCAGACTGTAATGCACTCTCCTCGTATG GATCTTCTTTACTTCCATTGTGGTTGCATGCTGAGGTGCACCTTAAGCAACTAGAACTTT CAGTTTCCAAGTTTGAAGCTAGCTACACTACCAGACATGGATATCTGGAGACGGTGGATG CAGGACACAAAGCACCTAATGAAGCTAAAGTTATGGCACCCTCCGAGGGTGAGCATTTGA AAGTTGATGTTAGCACTCTGGGAATTGGTACTGGCGATGAAAATATTAAGGTTGAGGAAC CATGTACAACATCATCTGCTCAGAACTCACAATGTGTGGCAGCAGCTATTTTAAGAGTTG AATCAGACAGTGATGAAGATATGGACGTGGACATGGAGGTCGATGAAGAAGGTGTTGAAG AGCACGGCGGATTCACTTCTATGCCAAATAAGGAGCATCCTTCATCAGAGCAAGTACGAT CACCAGCTTTGTCATCATTGGAAGACTCTGCTCCTCCCCAACAGGATAATGACATTCCTC CTCCACCACCACCACCAGAAGAGGAATGGATTCCACCTCCACCACCGGAGAATGAACCAG CTCCTCCACCTCCTCCTGAGCCTGAAGAGCCTGCTGTGTCATTTGTTCATGCTGATACAC TTCCTCAGCCATACGGAGGTCAAGCAAACTTGGGTTATATGCTTCCAGGAATGGAGTACT ATCCCGCTTCTGGTACAGATGGCACAAATGCCAGCTACTATATGCAAGCGAGCGATTCTC ATATTCTTCAATCGCAGCAGCATTCTTACTACGCACCGTTGTCTGCAAGTGGCGTATCTA TTCCTGTTGAGACCACATCGATCCCCCCAGTACCAGGTTCTTATTATAGCTATCCTTCTG TCACTATGGCTGCCACTGAAGTAGCGGCTGAATCTTCTGGATACTATGGTTCATCAACCT CTGCCATTTCTAGCGGTGAATTAGATAACAAAACAAGCTCAGCCTCCCTTGTTTCAAATA GTAATGTGAATCCTGTGGAGTCTGATAAAGTGATATCCAAGGAGCCTACAGTTGTTTCTT TGAGCCAATCAGTAGGGGCAGCCTCAGCTTCAGCACCAACAGTACATGGTAGTTCTACTC TAGCTTCTACTAGTACCACTAATCAGACTAAAGTTCCTCGTACTAAGAAGCGACCTGTTG CTGTTGCATCATCACTGAGATCTAATAAGAAGGTCTCAAGTCTGGTGGATAAGGCAGAGC AATCTGTTTACATGGTAATTGGTAAGGCTTAAGACAAGTGGAAAGCTGCAAAAGAGGAGC TTTGTGATGAAGAGGAAGAGGAGCCTGAAGATGCTTTGGAGTACCTAGAAAGGAAACGTC GGAAGGAAATAGATGGGTGGCGTAAGCAACAAATAGCTAGTGGAGAAGCTAAGGAAAATG CTAATTTTGTTCCCCTTGGCGGTAACTGGCGTGACCGTGTAAAACGCAAAAGAGCTGAAG CAAAGAAGGAAGCAAAGACTGAATCTGTTTGTGCAGCTGCCGAACAACACAAAGGAGAGC CTGATCTCTCAGAGCTTTCCAAGGGTCTCCCTTCTGGGTGGCAGGCATACATAGACGAGT CTACGAAGCAAGTGTACTATGGGAACAACCTCACTTCCGAGACTACTTGGGATCGGCCTA GCAAATAAAGATTGAACTAGTTGAAGATGGTCCAGTTTTGCTCTGTAGATATCCTCATAC ATCTATACGTTGCCTGTCTGGTTATGAGGCTGTATTGTTTCTTTTATTTTCCACTGGGAG ATCGTAGCAGGAAGGATACTTCATTTTGGTATATAGAGGCATCCCTTGTAAGAGTGGCAA CTTGAGATCGAATTACTGAAGCAAAAAATACTAGTTAGTTGCTGACCAAGGAAAAATGTG CCTTGTTAAGTGGTGGGAGTCTTTACCTCGATCTGATACCATTTGCTTTCAAAACAATGT CAATTATATTCGATTTTAGGTTGTGCTAAATTCTAGACTTCTCC
Protein Sequence (691 aa)
>BART1_0-u51812.028 691 150831_barley_pseudomolecules MIVASVHKKENPLALLGQYSDDEEEDEVATDQPNGETKGSSTDASAKVFNDHGDVTGDKG DADSELPASVSVQQEASQADDVKTITENVAEEFTVAPEPTLENECVTVMEAVPDSSGMQI VGDIGGNWKAIMHEQSNQCYYWNTVTGETSWEIPDGLASGVAGDGVTSASVPTHMGYSVE AQAHVLPHSNVEAYPSDVSVGNGTATYTAMGTYTHDAYAYTGAVASHESVDIDPLQLAKY GEDLLQRLKLLERPHVAIDSLELIKREIEIRVADCNALSSYGSSLLPLWLHAEVHLKQLE LSVSKFEASYTTRHGYLETVDAGHKAPNEAKVMAPSEGEHLKVDVSTLGIGTGDENIKVE EPCTTSSAQNSQCVAAAILRVESDSDEDMDVDMEVDEEGVEEHGGFTSMPNKEHPSSEQV RSPALSSLEDSAPPQQDNDIPPPPPPPEEEWIPPPPPENEPAPPPPPEPEEPAVSFVHAD TLPQPYGGQANLGYMLPGMEYYPASGTDGTNASYYMQASDSHILQSQQHSYYAPLSASGV SIPVETTSIPPVPGSYYSYPSVTMAATEVAAESSGYYGSSTSAISSGELDNKTSSASLVS NSNVNPVESDKVISKEPTVVSLSQSVGAASASAPTVHGSSTLASTSTTNQTKVPRTKKRP VAVASSLRSNKKVSSLVDKAEQSVYMVIGKA