- Transcript BART1_0-u51812.026
- Transcript IDBART1_0-u51812.026
- Gene IDBART1_0-u51812
Barley RTD
Exon Structure of BART1_0-u51812.026
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 140679678 | 140679416 | + |
| chr7H | 2 | 140680417 | 140680127 | + |
| chr7H | 3 | 140680803 | 140680682 | + |
| chr7H | 4 | 140681781 | 140681165 | + |
| chr7H | 5 | 140683178 | 140681885 | + |
| chr7H | 6 | 140684053 | 140683422 | + |
| chr7H | 7 | 140684216 | 140684143 | + |
| chr7H | 8 | 140684701 | 140684566 | + |
| chr7H | 9 | 140685417 | 140684971 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0 | 0 |
| morex | ETI | 0.000000065017 | 0.00213578 | 0.0000304352 |
| morex | LEA | 0 | 0.462936 | 0 |
| morex | EPI | 0.00376235 | 0 | 0.379008 |
| morex | ROO | 0 | 0.537234 | 0.151234 |
| morex | ROO2 | 0.3782 | 0.61563 | 0.00128154 |
| morex | NOD | 0.523912 | 0.00000511339 | 0.0662167 |
| morex | RAC | 2.71512 | 2.29118 | 2.11494 |
| morex | INF1 | 2.68905 | 1.13943 | 2.80226 |
| morex | INF2 | 3.50454 | 5.16377 | 9.2989 |
| morex | CAR5 | 0.243899 | 1.38852 | 0.851569 |
| morex | CAR15 | 0.5429 | 0.864438 | 0 |
| morex | LEM | 1.22322 | 0.388875 | 1.29156 |
| morex | LOD | 0.116337 | 0.865735 | 1.06823 |
| morex | PAL | 0.00000700265 | 0.0769028 | 0.958236 |
| morex | SEN | 0.324806 | 0.485431 | 0.402812 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os06g19470.2 | +2 | 0.0 | 590 | 412/666 (62%) | protein|WW domain containing protein, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g43210.1.p | +2 | 0.0 | 701 | 477/668 (71%) | pacid=32799652 transcript=Bradi1g43210.1 locus=Bradi1g43210 ID=Bradi1g43210.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3876 bp)
>BART1_0-u51812.026 3876 150831_barley_pseudomolecules CGGACACCCGCCTACCGCCAGCTCCCTCCACTTCGCCTCTCCTCCTGATTCGCACCGCTT CCCTTTTTGCCGTAAAACAAAACACCCCGACGTCACCCTCCAAACCCTAACCCTAGAATC TAGAAGACGTCCATCTCCACCCCCGGCGCGCGCCCGACTACTCGGGGCAGCGGCGATGGG GAGGCGGAAGGAGCGCCGCCTGGCGGCCAAGGCGGCCTCGGGCCGTAGGGTCAAGCTCGA CCTCTTCCTCGATCCTTCCCCCGGGGAGGCATCTACTAAAGAGGGAGTAGGGGAGGAAAA CCGCGAGCAGCAAACTGGTGTTCCCACTTCACCATCTTCGTCAGGTGGGTTCAATCAATT TCCTTCCAAGGGATATGTAAAGACGGCACATGCCTATGGAATGTAAATTTGGTGGAAATT TGGAATTTTGTTCAAGCATGTGTATGCTCCAAATTTCTGGTTTGAGGCACATGTAGGGTT CCCGGCCTGCAAGGAACACTGAGTAAATTCTTCAGATCAGGCTGCCACTGTCAAAACTGG GTGTGTTCCTACCGATAAGAAGGAAAATCCTCTAGCGTTGCTTGGGCAATATAGTGATGA TGAAGAAGAGGATGAAGTAGCAACAGATCAACCCAATGGTGAAACTAAGGGAAGTTCAAC TGATGCAAGTGCCAAGGTTTTTAACGATCATGGTGATGTAACTGGGGATAAAGGCGATGC AGATAGTGAACTGCCTGCTTCTGTTAGTGTTCAGCAGGAAGCATCTCAAGCCGATGATGT AAAAACTATCACAGAAAATGTTGCTGAGGAATTTACTGTTGCCCCTGAGCCAACTCTGGA AAATGAGTGTGTGACAGTAATGGAAGCTGTCCCAGATTCATCTGGCATGCAAATCGTGGG TGACATTGGTGGGAATTGGAAGGCTATAATGCATGAACAAAGTAATCAGTGTTACTACTG GAACACAGTTACAGGAGAAACTTCTTGGGAGATTCCTGATGGATTAGCTTCGGGGGTTGC TGGTGATGGAGTCACTTCTGCATCTGTGCCTACTCATATGGGCTACTCTGTAGAAGCTCA AGCACATGTCCTTCCCCACAGCAATGTTGAAGCATATCCTAGTGATGTATCTGTTGGGAA TGGCACAGCAACCTATACTGCTATGGGAACTTATACTCATGATGCTTATGCTTACACTGG AGCCGTCGCTAGTCATGAGTCAGTGGACATTGACCCCTTGCAGCTTGCAAAATATGGTGA GGATTTACTGCAAAGATTGAAGCTGCTGGAAAGGCCACATGTTGCCATTGACAGTCTTGA GTTGATAAAAAGAGAAATTGAGATACGAGTAGCAGACTGTAATGCACTCTCCTCGTATGG ATCTTCTTTACTTCCATTGTGGTTGCATGCTGAGGTGCACCTTAAGCAACTAGAACTTTC AGTTTCCAAGTTTGAAGCTAGCTACACTACCAGACATGGATATCTGGAGACGGTGGATGC AGGACACAAAGCACCTAATGAAGCTAAAGTTATGGCACCCTCCGAGGGTGAGCATTTGAA AGTTGATGTTAGCACTCTGGGAATTGGTACTGGCGATGAAAATATTAAGGTTGAGGAACC ATGTACAACATCATCTGCTCAGAACTCACAATGTGTGGCAGCAGCTATTTTAAGAGTTGA ATCAGACAGTGATGAAGATATGGACGTGGACATGGAGGTCGATGAAGAAGGTGTTGAAGA GCACGGCGGATTCACTTCTATGCCAAATAAGGAGCATCCTTCATCAGAGCAAGTACGATC ACCAGCTTTGTCATCATTGGAAGACTCTGCTCCTCCCCAACAGGATAATGACATTCCTCC TCCACCACCACCACCAGAAGAGGAATGGATTCCACCTCCACCACCGGAGAATGAACCAGC TCCTCCACCTCCTCCTGAGCCTGAAGAGCCTGCTGTGTCATTTGTTCATGCTGATACACT TCCTCAGCCATACGGAGGTCAAGCAAACTTGGGTTATATGCTTCCAGGAATGGAGTACTA TCCCGCTTCTGGTACAGATGGCACAAATGCCAGCTACTATATGCAAGCGAGCGATTCTCA TATTCTTCAATCGCAGCAGCATTCTTACTACGCACCGTTGTCTGCAAGTGGCGTATCTAT TCCTGTTGAGACCACATCGATCCCCCCAGTACCAGGTTCTTATTATAGCTATCCTTCTGT CACTATGGCTGCCACTGAAGTAGCGGCTGAATCTTCTGGATACTATGGTTCATCAACCTC TGCCATTTCTAGCGGTGAATTAGATAACAAAACAAGCTCAGCCTCCCTTGTTTCAAATAG TAATGTGAATCCTGTGGAGTCTGATAAAGTGATATCCAAGGAGCCTACAGTTGTTTCTTT GAGCCAATCAGTAGGGGCAGCCTCAGCTTCAGCACCAACAGTACATGGTAGTTCTACTCT AGCTTCTACTAGTACCACTAATCAGACTAAAGGTAATTTATTATTCTTTGCAAGGATACT TAATGTTACTAGCTCGTACATGGTAGTTCTACTCTAGCTTCTACTAGTACCACTAATCAG ACTAAAGTTCCTCGTACTAAGAAGCGACCTGTTGCTGTTGCATCATCACTGAGATCTAAT AAGAAGGTCTCAAGTCTGGTGGATAAGGTATCTCCCTGACCTCCCAAAGCTGCTGTTAAA ATAGTGACCATCTCTGCTCTCTCCTACCCTACCATCAACTGCTCCCAAGTGTGGTGCTTG ACATCAATGAAGAAATTTAACTCACTGCATGATATGCATTATTGCTAATGGTGTATACTT AGTCGTTGAGACATACTCTTGGTTATGTTATTAGCAAGAGAGCACACTGTCCTCGGCCAG TTTATTTCGTGGTGCACAACATTGGTCCTCCAGAAAAAAAACTCATGCAAGTGGGAGTAT GGCCGTGTTTCCTGACTATTTCGTCTCATGTTTATCATTTCTTATTTTAAAGGCAGAGCA ATCTGTTTACATGGTAATTGGTAAGGCTTAAGACAAGGTGAGTGTTGATGTATAATGATT GTTTCCTTATTAATCTACCTTTACTAAAGCGACCTTTTATTTTATTTTATTTCACTATTA CAGTGGAAAGCTGCAAAAGAGGAGCTTTGTGATGAAGAGGAAGAGGAGCCTGAAGATGCT TTGGAGTACCTAGAAAGGAAACGTCGGAAGGAAATAGATGGGTGGCGTAAGCAACAAATA GCTAGTGGAGAAGCTAAGGAAAATGCTAATTTTGTTCCCCTTGGCGGTAACTGGCGTGAC CGTGTAAAACGCAAAAGAGCTGAAGCAAAGAAGGAAGCAAAGACTGAATCTGTTTGTGCA GCTGCCGAACAACACAAAGGAGAGCCTGATCTCTCAGAGCTTTCCAAGGGTCTCCCTTCT GGGTGGCAGGCATACATAGACGAGTCTACGAAGCAAGTGTACTATGGGAACAACCTCACT TCCGAGACTACTTGGGATCGGCCTAGCAAATAAAGATTGAACTAGTTGAAGATGGTCCAG TTTTGCTCTGTAGATATCCTCATACATCTATACGTTGCCTGTCTGGTTATGAGGCTGTAT TGTTTCTTTTATTTTCCACTGGGAGATCGTAGCAGGAAGGATACTTCATTTTGGTATATA GAGGCATCCCTTGTAAGAGTGGCAACTTGAGATCGAATTACTGAAGCAAAAAATACTAGT TAGTTGCTGACCAAGGAAAAATGTGCCTTGTTAAGTGGTGGGAGTCTTTACCTCGATCTG ATACCATTTGCTTTCAAAACAATGTCAATTATATTCGATTTTAGGTTGTGCTAAATTCTA GACTTCTCCAATTATTTAACATTAGAAAGAAAGATG
Protein Sequence (565 aa)
>BART1_0-u51812.026 565 150831_barley_pseudomolecules MEAVPDSSGMQIVGDIGGNWKAIMHEQSNQCYYWNTVTGETSWEIPDGLASGVAGDGVTS ASVPTHMGYSVEAQAHVLPHSNVEAYPSDVSVGNGTATYTAMGTYTHDAYAYTGAVASHE SVDIDPLQLAKYGEDLLQRLKLLERPHVAIDSLELIKREIEIRVADCNALSSYGSSLLPL WLHAEVHLKQLELSVSKFEASYTTRHGYLETVDAGHKAPNEAKVMAPSEGEHLKVDVSTL GIGTGDENIKVEEPCTTSSAQNSQCVAAAILRVESDSDEDMDVDMEVDEEGVEEHGGFTS MPNKEHPSSEQVRSPALSSLEDSAPPQQDNDIPPPPPPPEEEWIPPPPPENEPAPPPPPE PEEPAVSFVHADTLPQPYGGQANLGYMLPGMEYYPASGTDGTNASYYMQASDSHILQSQQ HSYYAPLSASGVSIPVETTSIPPVPGSYYSYPSVTMAATEVAAESSGYYGSSTSAISSGE LDNKTSSASLVSNSNVNPVESDKVISKEPTVVSLSQSVGAASASAPTVHGSSTLASTSTT NQTKGNLLFFARILNVTSSYMVVLL