- Transcript BART1_0-u51812.023
- Transcript IDBART1_0-u51812.023
- Gene IDBART1_0-u51812
Barley RTD
Exon Structure of BART1_0-u51812.023
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 140679678 | 140679415 | + |
| chr7H | 2 | 140680478 | 140680127 | + |
| chr7H | 3 | 140680803 | 140680682 | + |
| chr7H | 4 | 140681781 | 140681165 | + |
| chr7H | 5 | 140683178 | 140681885 | + |
| chr7H | 6 | 140683871 | 140683422 | + |
| chr7H | 7 | 140684053 | 140683958 | + |
| chr7H | 8 | 140684216 | 140684143 | + |
| chr7H | 9 | 140684701 | 140684566 | + |
| chr7H | 10 | 140685390 | 140684971 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.000003088 | 0.000408897 | 0.0000000314651 |
| morex | ETI | 0.000000558756 | 0.000000207735 | 0 |
| morex | LEA | 0 | 0 | 0 |
| morex | EPI | 0 | 0 | 0.000000880557 |
| morex | ROO | 0.136628 | 0 | 0 |
| morex | ROO2 | 0 | 0.0000327519 | 0.0000259845 |
| morex | NOD | 0 | 0.00000443143 | 0 |
| morex | RAC | 0.0016088 | 0.000000726519 | 0.0000168797 |
| morex | INF1 | 0.000000124658 | 0.0000277501 | 0.0000017546 |
| morex | INF2 | 0.0000000871896 | 0.00000703698 | 0.0000000108774 |
| morex | CAR5 | 0 | 0.00630629 | 0 |
| morex | CAR15 | 0 | 0.0000000074124 | 0 |
| morex | LEM | 0.0000362591 | 0 | 0.0000027213 |
| morex | LOD | 0.000036621 | 0 | 0.00000276189 |
| morex | PAL | 0.0000648887 | 0.0115846 | 0 |
| morex | SEN | 0 | 0 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os06g19470.2 | +1 | 0.0 | 585 | 408/656 (62%) | protein|WW domain containing protein, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g43210.1.p | +1 | 0.0 | 698 | 474/658 (72%) | pacid=32799652 transcript=Bradi1g43210.1 locus=Bradi1g43210 ID=Bradi1g43210.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3825 bp)
>BART1_0-u51812.023 3825 150831_barley_pseudomolecules CCGGACACCCGCCTACCGCCAGCTCCCTCCACTTCGCCTCTCCTCCTGATTCGCACCGCT TCCCTTTTTGCCGTAAAACAAAACACCCCGACGTCACCCTCCAAACCCTAACCCTAGAAT CTAGAAGACGTCCATCTCCACCCCCGGCGCGCGCCCGACTACTCGGGGCAGCGGCGATGG GGAGGCGGAAGGAGCGCCGCCTGGCGGCCAAGGCGGCCTCGGGCCGTAGGGTCAAGCTCG ACCTCTTCCTCGATCCTTCCCCCGGGGAGGCATCTACTAAAGAGGGAGTAGGGGAGGAAA ACCGCGAGCAGCAAACTGGTGTTCCCACTTCACCATCTTCGTCAGGTGGGTTCAATCAAT TTCCTTCCAAGGGATATGTAAAGACGGCACATGCCTATGGAATGTAAATTTGGTGGAAAT TTGGAATTTTGTTCAAGCATGTGTATGCTCCAAATTTCTGGTTTGAGGCACATGTAGGGT TCCCGGCCTGCAAGGAACACTGAGTAAATTCTTCAGATCAGGCTGCCACTGTCAAAACTG GGTGTGTTCCTACCGGTAATTTCTCTTTTGGCAGCATCTGAGCGTGGGGATTTCAGGATG ATTGTTGCCTCGGTTCATAAGAAGGAAAATCCTCTAGCGTTGCTTGGGCAATATAGTGAT GATGAAGAAGAGGATGAAGTAGCAACAGATCAACCCAATGGTGAAACTAAGGGAAGTTCA ACTGATGCAAGTGCCAAGGTTTTTAACGATCATGGTGATGTAACTGGGGATAAAGGCGAT GCAGATAGTGAACTGCCTGCTTCTGTTAGTGTTCAGCAGGAAGCATCTCAAGCCGATGAT GTAAAAACTATCACAGAAAATGTTGCTGAGGAATTTACTGTTGCCCCTGAGCCAACTCTG GAAAATGAGTGTGTGACAGTAATGGAAGCTGTCCCAGATTCATCTGGCATGCAAATCGTG GGTGACATTGGTGGGAATTGGAAGGCTATAATGCATGAACAAAGTAATCAGTGTTACTAC TGGAACACAGTTACAGGAGAAACTTCTTGGGAGATTCCTGATGGATTAGCTTCGGGGGTT GCTGGTGATGGAGTCACTTCTGCATCTGTGCCTACTCATATGGGCTACTCTGTAGAAGCT CAAGCACATGTCCTTCCCCACAGCAATGTTGAAGCATATCCTAGTGATGTATCTGTTGGG AATGGCACAGCAACCTATACTGCTATGGGAACTTATACTCATGATGCTTATGCTTACACT GGAGCCGTCGCTAGTCATGAGTCAGTGGACATTGACCCCTTGCAGCTTGCAAAATATGGT GAGGATTTACTGCAAAGATTGAAGCTGCTGGAAAGGCCACATGTTGCCATTGACAGTCTT GAGTTGATAAAAAGAGAAATTGAGATACGAGTAGCAGACTGTAATGCACTCTCCTCGTAT GGATCTTCTTTACTTCCATTGTGGTTGCATGCTGAGGTGCACCTTAAGCAACTAGAACTT TCAGTTTCCAAGTTTGAAGCTAGCTACACTACCAGACATGGATATCTGGAGACGGTGGAT GCAGGACACAAAGCACCTAATGAAGCTAAAGTTATGGCACCCTCCGAGGGTGAGCATTTG AAAGTTGATGTTAGCACTCTGGGAATTGGTACTGGCGATGAAAATATTAAGGTTGAGGAA CCATGTACAACATCATCTGCTCAGAACTCACAATGTGTGGCAGCAGCTATTTTAAGAGTT GAATCAGACAGTGATGAAGATATGGACGTGGACATGGAGGTCGATGAAGAAGGTGTTGAA GAGCACGGCGGATTCACTTCTATGCCAAATAAGGAGCATCCTTCATCAGAGCAAGTACGA TCACCAGCTTTGTCATCATTGGAAGACTCTGCTCCTCCCCAACAGGATAATGACATTCCT CCTCCACCACCACCACCAGAAGAGGAATGGATTCCACCTCCACCACCGGAGAATGAACCA GCTCCTCCACCTCCTCCTGAGCCTGAAGAGCCTGCTGTGTCATTTGTTCATGCTGATACA CTTCCTCAGCCATACGGAGGTCAAGCAAACTTGGGTTATATGCTTCCAGGAATGGAGTAC TATCCCGCTTCTGGTACAGATGGCACAAATGCCAGCTACTATATGCAAGCGAGCGATTCT CATATTCTTCAATCGCAGCAGCATTCTTACTACGCACCGTTGTCTGCAAGTGGCGTATCT ATTCCTGTTGAGACCACATCGATCCCCCCAGTACCAGGTTCTTATTATAGCTATCCTTCT GTCACTATGGCTGCCACTGAAGTAGCGGCTGAATCTTCTGGATACTATGGTTCATCAACC TCTGCCATTTCTAGCGGTGAATTAGATAACAAAACAAGCTCAGCCTCCCTTGTTTCAAAT AGTAATGTGAATCCTGTGGAGTCTGATAAAGTGATATCCAAGGAGCCTACAGTTGTTTCT TTGAGCCAATCAGTAGGGGCAGCCTCAGCTTCAGCACCAACAGTACATGGTAGTTCTACT CTAGCTTCTACTAGTACCACTAATCAGACTAAAGGTAATTTATTATTCTTTGCAAGGATA CTTAATGTTACTAGCTCGTACATGGTAGTTCTACTCTAGCTTCTACTAGTACCACTAATC AGACTAAAGTTCCTCGTACTAAGAAGCGACCTGTTGCTGTTGCATCATCACTGAGATCTA ATAAGAAGGTCTCAAGTCTGGTGGATAAGGTATCTCCCTGACCTCCCAAAGCTGCTGTTA AAATAGTGACCATCTCTGCTCTCTCCTACCCTACCATCAACTGCTCCCAAGTGTGGTGCT TGACATCAATGAAGAAATTTAACTCACTGCATGATATGCATTATTGCTAATGGTGTATAC TTAGTCGTTGAGACATACTCTTGGTTATGTTATTAGCAAGAGAGCACACTGTCCTCGGCC AGTTTATTTCGTGGTGCACAACATTGGTCCTCCAGAAAAAAAACTCATGCAAGTGGGAGT ATGGCCGTGTTTCCTGACTATTTCGTCTCATGTTTATCATTTCTTATTTTAAAGGCAGAG CAATCTGTTTACATGGTAATTGGTAAGGCTTAAGACAAGTGGAAAGCTGCAAAAGAGGAG CTTTGTGATGAAGAGGAAGAGGAGCCTGAAGATGCTTTGGAGTACCTAGAAAGGAAACGT CGGAAGGAAATAGATGGGTGGCGTAAGCAACAAATAGCTAGTGGAGAAGCTAAGGAAAAT GCTAATTTTGTTCCCCTTGGCGGTAACTGGCGTGACCGTGTAAAACGCAAAAGAGCTGAA GCAAAGAAGGAAGCAAAGACTGAATCTGTTTGTGCAGCTGCCGAACAACACAAAGGAGAG CCTGATCTCTCAGAGCTTTCCAAGGGTCTCCCTTCTGGGTGGCAGGCATACATAGACGAG TCTACGAAGCAAGTGTACTATGGGAACAACCTCACTTCCGAGACTACTTGGGATCGGCCT AGCAAATAAAGATTGAACTAGTTGAAGATGGTCCAGTTTTGCTCTGTAGATATCCTCATA CATCTATACGTTGCCTGTCTGGTTATGAGGCTGTATTGTTTCTTTTATTTTCCACTGGGA GATCGTAGCAGGAAGGATACTTCATTTTGGTATATAGAGGCATCCCTTGTAAGAGTGGCA ACTTGAGATCGAATTACTGAAGCAAAAAATACTAGTTAGTTGCTGACCAAGGAAAAATGT GCCTTGTTAAGTGGTGGGAGTCTTTACCTCGATCTGATACCATTTGCTTTCAAAACAATG TCAATTATATTCGATTTTAGGTTGTGCTAAATTCTAGACTTCTCC
Protein Sequence (673 aa)
>BART1_0-u51812.023 673 150831_barley_pseudomolecules MIVASVHKKENPLALLGQYSDDEEEDEVATDQPNGETKGSSTDASAKVFNDHGDVTGDKG DADSELPASVSVQQEASQADDVKTITENVAEEFTVAPEPTLENECVTVMEAVPDSSGMQI VGDIGGNWKAIMHEQSNQCYYWNTVTGETSWEIPDGLASGVAGDGVTSASVPTHMGYSVE AQAHVLPHSNVEAYPSDVSVGNGTATYTAMGTYTHDAYAYTGAVASHESVDIDPLQLAKY GEDLLQRLKLLERPHVAIDSLELIKREIEIRVADCNALSSYGSSLLPLWLHAEVHLKQLE LSVSKFEASYTTRHGYLETVDAGHKAPNEAKVMAPSEGEHLKVDVSTLGIGTGDENIKVE EPCTTSSAQNSQCVAAAILRVESDSDEDMDVDMEVDEEGVEEHGGFTSMPNKEHPSSEQV RSPALSSLEDSAPPQQDNDIPPPPPPPEEEWIPPPPPENEPAPPPPPEPEEPAVSFVHAD TLPQPYGGQANLGYMLPGMEYYPASGTDGTNASYYMQASDSHILQSQQHSYYAPLSASGV SIPVETTSIPPVPGSYYSYPSVTMAATEVAAESSGYYGSSTSAISSGELDNKTSSASLVS NSNVNPVESDKVISKEPTVVSLSQSVGAASASAPTVHGSSTLASTSTTNQTKGNLLFFAR ILNVTSSYMVVLL