- Transcript BART1_0-u51812.020
- Transcript IDBART1_0-u51812.020
- Gene IDBART1_0-u51812
Barley RTD
Exon Structure of BART1_0-u51812.020
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 140679678 | 140679409 | + |
| chr7H | 2 | 140680207 | 140680127 | + |
| chr7H | 3 | 140680803 | 140680682 | + |
| chr7H | 4 | 140681781 | 140681165 | + |
| chr7H | 5 | 140683083 | 140681885 | + |
| chr7H | 6 | 140683871 | 140683179 | + |
| chr7H | 7 | 140684053 | 140683958 | + |
| chr7H | 8 | 140684216 | 140684143 | + |
| chr7H | 9 | 140684701 | 140684566 | + |
| chr7H | 10 | 140685382 | 140684971 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.876047 | 2.37057 | 0.993935 |
| morex | ETI | 3.29286 | 2.60071 | 4.26696 |
| morex | LEA | 2.35219 | 0 | 1.13971 |
| morex | EPI | 2.69928 | 2.82266 | 4.00771 |
| morex | ROO | 0 | 1.43562 | 0 |
| morex | ROO2 | 1.71091 | 2.24923 | 1.95119 |
| morex | NOD | 2.44465 | 2.35138 | 3.02284 |
| morex | RAC | 3.78618 | 4.4156 | 4.68766 |
| morex | INF1 | 2.13294 | 2.10144 | 5.14282 |
| morex | INF2 | 9.2697 | 2.8092 | 1.34587 |
| morex | CAR5 | 1.48677 | 0.55538 | 3.80897 |
| morex | CAR15 | 3.0495 | 0.00000513252 | 1.15457 |
| morex | LEM | 5.7906 | 5.20351 | 3.48345 |
| morex | LOD | 7.21907 | 5.69388 | 2.60126 |
| morex | PAL | 4.20832 | 1.3314 | 2.95897 |
| morex | SEN | 1.51405 | 3.39797 | 2.44919 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os06g19470.2 | +3 | 0.0 | 642 | 445/713 (62%) | protein|WW domain containing protein, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g43210.1.p | +3 | 0.0 | 773 | 516/717 (72%) | pacid=32799652 transcript=Bradi1g43210.1 locus=Bradi1g43210 ID=Bradi1g43210.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3700 bp)
>BART1_0-u51812.020 3700 150831_barley_pseudomolecules CCCACCCCGGACACCCGCCTACCGCCAGCTCCCTCCACTTCGCCTCTCCTCCTGATTCGC ACCGCTTCCCTTTTTGCCGTAAAACAAAACACCCCGACGTCACCCTCCAAACCCTAACCC TAGAATCTAGAAGACGTCCATCTCCACCCCCGGCGCGCGCCCGACTACTCGGGGCAGCGG CGATGGGGAGGCGGAAGGAGCGCCGCCTGGCGGCCAAGGCGGCCTCGGGCCGTAGGGTCA AGCTCGACCTCTTCCTCGATCCTTCCCCCGGGGAGGCATCTACTAAAGAGGGAGTAGGGG AGGAAAACCGCGAGCAGCAAACTGGTGTTCCCACTTCACCATCTTCGTCAGATAAGAAGG AAAATCCTCTAGCGTTGCTTGGGCAATATAGTGATGATGAAGAAGAGGATGAAGTAGCAA CAGATCAACCCAATGGTGAAACTAAGGGAAGTTCAACTGATGCAAGTGCCAAGGTTTTTA ACGATCATGGTGATGTAACTGGGGATAAAGGCGATGCAGATAGTGAACTGCCTGCTTCTG TTAGTGTTCAGCAGGAAGCATCTCAAGCCGATGATGTAAAAACTATCACAGAAAATGTTG CTGAGGAATTTACTGTTGCCCCTGAGCCAACTCTGGAAAATGAGTGTGTGACAGTAATGG AAGCTGTCCCAGATTCATCTGGCATGCAAATCGTGGGTGACATTGGTGGGAATTGGAAGG CTATAATGCATGAACAAAGTAATCAGTGTTACTACTGGAACACAGTTACAGGAGAAACTT CTTGGGAGATTCCTGATGGATTAGCTTCGGGGGTTGCTGGTGATGGAGTCACTTCTGCAT CTGTGCCTACTCATATGGGCTACTCTGTAGAAGCTCAAGCACATGTCCTTCCCCACAGCA ATGTTGAAGCATATCCTAGTGATGTATCTGTTGGGAATGGCACAGCAACCTATACTGCTA TGGGAACTTATACTCATGATGCTTATGCTTACACTGGAGCCGTCGCTAGTCATGAGTCAG TGGACATTGACCCCTTGCAGCTTGCAAAATATGGTGAGGATTTACTGCAAAGATTGAAGC TGCTGGAAAGGCCACATGTTGCCATTGACAGTCTTGAGTTGATAAAAAGAGAAATTGAGA TACGAGTAGCAGACTGTAATGCACTCTCCTCGTATGGATCTTCTTTACTTCCATTGTGGT TGCATGCTGAGGTGCACCTTAAGCAACTAGAACTTTCAGTTTCCAAGTTTGAAGCTAGCT ACACTACCAGACATGGATATCTGGAGACGGTGGATGCAGGACACAAAGCACCTAATGAAG CTAAAGTTATGGCACCCTCCGAGGGTGAGCATTTGAAAGTTGATGTTAGCACTCTGGGAA TTGGTACTGGCGATGAAAATATTAAGGTTGAGGAACCATGTACAACATCATCTGCTCAGA ACTCACAATGTGTGGCAGCAGCTATTTTAAGAGTTGAATCAGACAGTGATGAAGATATGG ACGTGGACATGGAGGTCGATGAAGAAGGTGTTGAAGAGCACGGCGGATTCACTTCTATGC CAAATAAGGAGCATCCTTCATCAGAGCAAGTACGATCACCAGCTTTGTCATCATTGGAAG ACTCTGCTCCTCCCCAACAGGATAATGACATTCCTCCTCCACCACCACCACCAGAAGAGG AATGGATTCCACCTCCACCACCGGAGAATGAACCAGCTCCTCCACCTCCTCCTGAGCCTG AAGAGCCTGCTGTGTCATTTGTTCATGCTGATACACTTCCTCAGCCATACGGAGGTCAAG CAAACTTGGGTTATATGCTTCCAGGAATGGAGTACTATCCCGCTTCTGGTACAGATGGCA CAAATGCCAGCTACTATATGCAAGCGAGCGATTCTCATATTCTTCAATCGCAGCAGCATT CTTACTACGCACCGTTGTCTGCAAGTGGCGTATCTATTCCTGTTGAGACCACATCGATCC CCCCAGTACCAGGTTCTTATTATAGCTATCCTTCTGTCACTATGGCTGCCACTGAAGTAG CGGCTGAATCTTCTGGATACTATGGTTCATCAACCTCTGCCATTTCTAGCGGTGAATTAG ATAACAAAACAAGCTCAGCCTCCCTTGTTTCAAATAGTAATGTGAATCCTGTGGAGTCTG ATAAAGTGATATCCAAGGAGCCTACAGTTGTTTCTTTGAGCCAATCAGTAGGGGCAGCCT CAGCTTCAGCACCAACAGTACATGGTAGTTCTACTCTAGCTTCTACTAGTACCACTAATC AGACTAAAGGTAATTTATTATTCTTTGCAAGGATACTTAATGTTACTAGCTCGTACTCCC TCCGTTCCTAAATATAAGTCCTTTTAGAGGTTCTACTAGGGGATTACATACGAATGTATA TAGACATACTTTAGAGTGTAGATTCTTTCATTTTGCTCCGTATGTAGTCCTCTAATGAAA TCTTTAAAAAGACTTATATTTAGGAACGGAGGGAGTAGTTGTTTTAGTTTTGACATTTGC ACTGATTTGCAGTTCCTCGTACTAAGAAGCGACCTGTTGCTGTTGCATCATCACTGAGAT CTAATAAGAAGGTCTCAAGTCTGGTGGATAAGGTATCTCCCTGACCTCCCAAAGCTGCTG TTAAAATAGTGACCATCTCTGCTCTCTCCTACCCTACCATCAACTGCTCCCAAGTGTGGT GCTTGACATCAATGAAGAAATTTAACTCACTGCATGATATGCATTATTGCTAATGGTGTA TACTTAGTCGTTGAGACATACTCTTGGTTATGTTATTAGCAAGAGAGCACACTGTCCTCG GCCAGTTTATTTCGTGGTGCACAACATTGGTCCTCCAGAAAAAAAACTCATGCAAGTGGG AGTATGGCCGTGTTTCCTGACTATTTCGTCTCATGTTTATCATTTCTTATTTTAAAGGCA GAGCAATCTGTTTACATGGTAATTGGTAAGGCTTAAGACAAGTGGAAAGCTGCAAAAGAG GAGCTTTGTGATGAAGAGGAAGAGGAGCCTGAAGATGCTTTGGAGTACCTAGAAAGGAAA CGTCGGAAGGAAATAGATGGGTGGCGTAAGCAACAAATAGCTAGTGGAGAAGCTAAGGAA AATGCTAATTTTGTTCCCCTTGGCGGTAACTGGCGTGACCGTGTAAAACGCAAAAGAGCT GAAGCAAAGAAGGAAGCAAAGACTGAATCTGTTTGTGCAGCTGCCGAACAACACAAAGGA GAGCCTGATCTCTCAGAGCTTTCCAAGGGTCTCCCTTCTGGGTGGCAGGCATACATAGAC GAGTCTACGAAGCAAGTGTACTATGGGAACAACCTCACTTCCGAGACTACTTGGGATCGG CCTAGCAAATAAAGATTGAACTAGTTGAAGATGGTCCAGTTTTGCTCTGTAGATATCCTC ATACATCTATACGTTGCCTGTCTGGTTATGAGGCTGTATTGTTTCTTTTATTTTCCACTG GGAGATCGTAGCAGGAAGGATACTTCATTTTGGTATATAGAGGCATCCCTTGTAAGAGTG GCAACTTGAGATCGAATTACTGAAGCAAAAAATACTAGTTAGTTGCTGACCAAGGAAAAA TGTGCCTTGTTAAGTGGTGGGAGTCTTTACCTCGATCTGATACCATTTGCTTTCAAAACA ATGTCAATTATATTCGATTTTAGGTTGTGCTAAATTCTAG
Protein Sequence (722 aa)
>BART1_0-u51812.020 722 150831_barley_pseudomolecules MGRRKERRLAAKAASGRRVKLDLFLDPSPGEASTKEGVGEENREQQTGVPTSPSSSDKKE NPLALLGQYSDDEEEDEVATDQPNGETKGSSTDASAKVFNDHGDVTGDKGDADSELPASV SVQQEASQADDVKTITENVAEEFTVAPEPTLENECVTVMEAVPDSSGMQIVGDIGGNWKA IMHEQSNQCYYWNTVTGETSWEIPDGLASGVAGDGVTSASVPTHMGYSVEAQAHVLPHSN VEAYPSDVSVGNGTATYTAMGTYTHDAYAYTGAVASHESVDIDPLQLAKYGEDLLQRLKL LERPHVAIDSLELIKREIEIRVADCNALSSYGSSLLPLWLHAEVHLKQLELSVSKFEASY TTRHGYLETVDAGHKAPNEAKVMAPSEGEHLKVDVSTLGIGTGDENIKVEEPCTTSSAQN SQCVAAAILRVESDSDEDMDVDMEVDEEGVEEHGGFTSMPNKEHPSSEQVRSPALSSLED SAPPQQDNDIPPPPPPPEEEWIPPPPPENEPAPPPPPEPEEPAVSFVHADTLPQPYGGQA NLGYMLPGMEYYPASGTDGTNASYYMQASDSHILQSQQHSYYAPLSASGVSIPVETTSIP PVPGSYYSYPSVTMAATEVAAESSGYYGSSTSAISSGELDNKTSSASLVSNSNVNPVESD KVISKEPTVVSLSQSVGAASASAPTVHGSSTLASTSTTNQTKGNLLFFARILNVTSSYSL RS