- Transcript BART1_0-u51812.019
- Transcript IDBART1_0-u51812.019
- Gene IDBART1_0-u51812
Barley RTD
Exon Structure of BART1_0-u51812.019
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 140679678 | 140679409 | + |
| chr7H | 2 | 140680478 | 140680127 | + |
| chr7H | 3 | 140680803 | 140680682 | + |
| chr7H | 4 | 140681781 | 140681165 | + |
| chr7H | 5 | 140683083 | 140681885 | + |
| chr7H | 6 | 140684053 | 140683422 | + |
| chr7H | 7 | 140684216 | 140684143 | + |
| chr7H | 8 | 140684701 | 140684566 | + |
| chr7H | 9 | 140685441 | 140684971 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.369541 | 0.599338 | 1.14444 |
| morex | ETI | 1.68936 | 0.544281 | 0 |
| morex | LEA | 0 | 0.314031 | 0 |
| morex | EPI | 0 | 0 | 0.259319 |
| morex | ROO | 0.0124421 | 0 | 0.676058 |
| morex | ROO2 | 0 | 0.358023 | 0.138693 |
| morex | NOD | 0 | 0.0660413 | 0 |
| morex | RAC | 0.276388 | 0.221576 | 0.805389 |
| morex | INF1 | 0.313834 | 0.845617 | 0.583171 |
| morex | INF2 | 2.21359 | 0.447953 | 1.55907 |
| morex | CAR5 | 0 | 0.29735 | 0 |
| morex | CAR15 | 0 | 0.294329 | 0 |
| morex | LEM | 0.972082 | 0 | 0.874048 |
| morex | LOD | 0.357999 | 0 | 0.246739 |
| morex | PAL | 1.10813 | 0.327308 | 0 |
| morex | SEN | 0 | 0 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os06g19470.2 | +1 | 0.0 | 625 | 432/683 (63%) | protein|WW domain containing protein, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g43210.1.p | +1 | 0.0 | 746 | 500/685 (73%) | pacid=32799652 transcript=Bradi1g43210.1 locus=Bradi1g43210 ID=Bradi1g43210.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3873 bp)
>BART1_0-u51812.019 3873 150831_barley_pseudomolecules CCCACCCCGGACACCCGCCTACCGCCAGCTCCCTCCACTTCGCCTCTCCTCCTGATTCGC ACCGCTTCCCTTTTTGCCGTAAAACAAAACACCCCGACGTCACCCTCCAAACCCTAACCC TAGAATCTAGAAGACGTCCATCTCCACCCCCGGCGCGCGCCCGACTACTCGGGGCAGCGG CGATGGGGAGGCGGAAGGAGCGCCGCCTGGCGGCCAAGGCGGCCTCGGGCCGTAGGGTCA AGCTCGACCTCTTCCTCGATCCTTCCCCCGGGGAGGCATCTACTAAAGAGGGAGTAGGGG AGGAAAACCGCGAGCAGCAAACTGGTGTTCCCACTTCACCATCTTCGTCAGGTGGGTTCA ATCAATTTCCTTCCAAGGGATATGTAAAGACGGCACATGCCTATGGAATGTAAATTTGGT GGAAATTTGGAATTTTGTTCAAGCATGTGTATGCTCCAAATTTCTGGTTTGAGGCACATG TAGGGTTCCCGGCCTGCAAGGAACACTGAGTAAATTCTTCAGATCAGGCTGCCACTGTCA AAACTGGGTGTGTTCCTACCGGTAATTTCTCTTTTGGCAGCATCTGAGCGTGGGGATTTC AGGATGATTGTTGCCTCGGTTCATAAGAAGGAAAATCCTCTAGCGTTGCTTGGGCAATAT AGTGATGATGAAGAAGAGGATGAAGTAGCAACAGATCAACCCAATGGTGAAACTAAGGGA AGTTCAACTGATGCAAGTGCCAAGGTTTTTAACGATCATGGTGATGTAACTGGGGATAAA GGCGATGCAGATAGTGAACTGCCTGCTTCTGTTAGTGTTCAGCAGGAAGCATCTCAAGCC GATGATGTAAAAACTATCACAGAAAATGTTGCTGAGGAATTTACTGTTGCCCCTGAGCCA ACTCTGGAAAATGAGTGTGTGACAGTAATGGAAGCTGTCCCAGATTCATCTGGCATGCAA ATCGTGGGTGACATTGGTGGGAATTGGAAGGCTATAATGCATGAACAAAGTAATCAGTGT TACTACTGGAACACAGTTACAGGAGAAACTTCTTGGGAGATTCCTGATGGATTAGCTTCG GGGGTTGCTGGTGATGGAGTCACTTCTGCATCTGTGCCTACTCATATGGGCTACTCTGTA GAAGCTCAAGCACATGTCCTTCCCCACAGCAATGTTGAAGCATATCCTAGTGATGTATCT GTTGGGAATGGCACAGCAACCTATACTGCTATGGGAACTTATACTCATGATGCTTATGCT TACACTGGAGCCGTCGCTAGTCATGAGTCAGTGGACATTGACCCCTTGCAGCTTGCAAAA TATGGTGAGGATTTACTGCAAAGATTGAAGCTGCTGGAAAGGCCACATGTTGCCATTGAC AGTCTTGAGTTGATAAAAAGAGAAATTGAGATACGAGTAGCAGACTGTAATGCACTCTCC TCGTATGGATCTTCTTTACTTCCATTGTGGTTGCATGCTGAGGTGCACCTTAAGCAACTA GAACTTTCAGTTTCCAAGTTTGAAGCTAGCTACACTACCAGACATGGATATCTGGAGACG GTGGATGCAGGACACAAAGCACCTAATGAAGCTAAAGTTATGGCACCCTCCGAGGGTGAG CATTTGAAAGTTGATGTTAGCACTCTGGGAATTGGTACTGGCGATGAAAATATTAAGGTT GAGGAACCATGTACAACATCATCTGCTCAGAACTCACAATGTGTGGCAGCAGCTATTTTA AGAGTTGAATCAGACAGTGATGAAGATATGGACGTGGACATGGAGGTCGATGAAGAAGGT GTTGAAGAGCACGGCGGATTCACTTCTATGCCAAATAAGGAGCATCCTTCATCAGAGCAA GTACGATCACCAGCTTTGTCATCATTGGAAGACTCTGCTCCTCCCCAACAGGATAATGAC ATTCCTCCTCCACCACCACCACCAGAAGAGGAATGGATTCCACCTCCACCACCGGAGAAT GAACCAGCTCCTCCACCTCCTCCTGAGCCTGAAGAGCCTGCTGTGTCATTTGTTCATGCT GATACACTTCCTCAGCCATACGGAGGTCAAGCAAACTTGGGTTATATGCTTCCAGGAATG GAGTACTATCCCGCTTCTGGTACAGATGGCACAAATGCCAGCTACTATATGCAAGCGAGC GATTCTCATATTCTTCAATCGCAGCAGCATTCTTACTACGCACCGTTGTCTGCAAGTGGC GTATCTATTCCTGTTGAGACCACATCGATCCCCCCAGTACCAGGTTCTTATTATAGCTAT CCTTCTGTCACTATGGCTGCCACTGAAGTAGCGGCTGAATCTTCTGGATACTATGGTTCA TCAACCTCTGCCATTTCTAGCGGTGAATTAGATAACAAAACAAGCTCAGCCTCCCTTGTT TCAAATAGTAATGTGAATCCTGTGGAGTCTGATAAAGTGATATCCAAGGAGCCTACAGTT GTTTCTTTGAGCCAATCAGTAGGGGCAGCCTCAGCTTCAGCACCAACAGTACATGGTAGT TCTACTCTAGCTTCTACTAGTACCACTAATCAGACTAAAGTTCCTCGTACTAAGAAGCGA CCTGTTGCTGTTGCATCATCACTGAGATCTAATAAGAAGGTCTCAAGTCTGGTGGATAAG GTATCTCCCTGACCTCCCAAAGCTGCTGTTAAAATAGTGACCATCTCTGCTCTCTCCTAC CCTACCATCAACTGCTCCCAAGTGTGGTGCTTGACATCAATGAAGAAATTTAACTCACTG CATGATATGCATTATTGCTAATGGTGTATACTTAGTCGTTGAGACATACTCTTGGTTATG TTATTAGCAAGAGAGCACACTGTCCTCGGCCAGTTTATTTCGTGGTGCACAACATTGGTC CTCCAGAAAAAAAACTCATGCAAGTGGGAGTATGGCCGTGTTTCCTGACTATTTCGTCTC ATGTTTATCATTTCTTATTTTAAAGGCAGAGCAATCTGTTTACATGGTAATTGGTAAGGC TTAAGACAAGGTGAGTGTTGATGTATAATGATTGTTTCCTTATTAATCTACCTTTACTAA AGCGACCTTTTATTTTATTTTATTTCACTATTACAGTGGAAAGCTGCAAAAGAGGAGCTT TGTGATGAAGAGGAAGAGGAGCCTGAAGATGCTTTGGAGTACCTAGAAAGGAAACGTCGG AAGGAAATAGATGGGTGGCGTAAGCAACAAATAGCTAGTGGAGAAGCTAAGGAAAATGCT AATTTTGTTCCCCTTGGCGGTAACTGGCGTGACCGTGTAAAACGCAAAAGAGCTGAAGCA AAGAAGGAAGCAAAGACTGAATCTGTTTGTGCAGCTGCCGAACAACACAAAGGAGAGCCT GATCTCTCAGAGCTTTCCAAGGGTCTCCCTTCTGGGTGGCAGGCATACATAGACGAGTCT ACGAAGCAAGTGTACTATGGGAACAACCTCACTTCCGAGACTACTTGGGATCGGCCTAGC AAATAAAGATTGAACTAGTTGAAGATGGTCCAGTTTTGCTCTGTAGATATCCTCATACAT CTATACGTTGCCTGTCTGGTTATGAGGCTGTATTGTTTCTTTTATTTTCCACTGGGAGAT CGTAGCAGGAAGGATACTTCATTTTGGTATATAGAGGCATCCCTTGTAAGAGTGGCAACT TGAGATCGAATTACTGAAGCAAAAAATACTAGTTAGTTGCTGACCAAGGAAAAATGTGCC TTGTTAAGTGGTGGGAGTCTTTACCTCGATCTGATACCATTTGCTTTCAAAACAATGTCA ATTATATTCGATTTTAGGTTGTGCTAAATTCTAGACTTCTCCAATTATTTAACATTAGAA AGAAAGATGATTTTTAAGTTTTTTTTCACACTT
Protein Sequence (682 aa)
>BART1_0-u51812.019 682 150831_barley_pseudomolecules MIVASVHKKENPLALLGQYSDDEEEDEVATDQPNGETKGSSTDASAKVFNDHGDVTGDKG DADSELPASVSVQQEASQADDVKTITENVAEEFTVAPEPTLENECVTVMEAVPDSSGMQI VGDIGGNWKAIMHEQSNQCYYWNTVTGETSWEIPDGLASGVAGDGVTSASVPTHMGYSVE AQAHVLPHSNVEAYPSDVSVGNGTATYTAMGTYTHDAYAYTGAVASHESVDIDPLQLAKY GEDLLQRLKLLERPHVAIDSLELIKREIEIRVADCNALSSYGSSLLPLWLHAEVHLKQLE LSVSKFEASYTTRHGYLETVDAGHKAPNEAKVMAPSEGEHLKVDVSTLGIGTGDENIKVE EPCTTSSAQNSQCVAAAILRVESDSDEDMDVDMEVDEEGVEEHGGFTSMPNKEHPSSEQV RSPALSSLEDSAPPQQDNDIPPPPPPPEEEWIPPPPPENEPAPPPPPEPEEPAVSFVHAD TLPQPYGGQANLGYMLPGMEYYPASGTDGTNASYYMQASDSHILQSQQHSYYAPLSASGV SIPVETTSIPPVPGSYYSYPSVTMAATEVAAESSGYYGSSTSAISSGELDNKTSSASLVS NSNVNPVESDKVISKEPTVVSLSQSVGAASASAPTVHGSSTLASTSTTNQTKVPRTKKRP VAVASSLRSNKKVSSLVDKVSP