- Transcript BART1_0-u51812.017
- Transcript IDBART1_0-u51812.017
- Gene IDBART1_0-u51812
Barley RTD
Exon Structure of BART1_0-u51812.017
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 140679678 | 140679407 | + |
| chr7H | 2 | 140680474 | 140680127 | + |
| chr7H | 3 | 140680803 | 140680682 | + |
| chr7H | 4 | 140681781 | 140681165 | + |
| chr7H | 5 | 140683083 | 140681885 | + |
| chr7H | 6 | 140684053 | 140683179 | + |
| chr7H | 7 | 140684216 | 140684143 | + |
| chr7H | 8 | 140684701 | 140684566 | + |
| chr7H | 9 | 140685431 | 140684971 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.546893 | 2.34263 | 3.11217 |
| morex | ETI | 0.000000102718 | 0.0000596828 | 0.00000694932 |
| morex | LEA | 3.35276 | 4.83383 | 0.469576 |
| morex | EPI | 0.000397023 | 0.0188469 | 0.090354 |
| morex | ROO | 0 | 1.09127 | 0.988144 |
| morex | ROO2 | 1.00055 | 0.430143 | 0.0000313978 |
| morex | NOD | 0.354274 | 0.000000194964 | 0.0000275336 |
| morex | RAC | 1.80908 | 1.56484 | 0.743684 |
| morex | INF1 | 16.9397 | 17.3575 | 12.9138 |
| morex | INF2 | 10.7414 | 23.5231 | 18.5527 |
| morex | CAR5 | 6.85111 | 1.80085 | 1.67575 |
| morex | CAR15 | 0.971625 | 6.61782 | 4.51194 |
| morex | LEM | 0.305417 | 0.000000645588 | 0.144713 |
| morex | LOD | 0.0790405 | 0.137473 | 0.223449 |
| morex | PAL | 0.000000167998 | 0.0791628 | 0.562043 |
| morex | SEN | 1.41562 | 1.18398 | 1.11415 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os06g19470.2 | +2 | 0.0 | 588 | 415/673 (62%) | protein|WW domain containing protein, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g43210.1.p | +2 | 0.0 | 700 | 479/675 (71%) | pacid=32799652 transcript=Bradi1g43210.1 locus=Bradi1g43210 ID=Bradi1g43210.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (4104 bp)
>BART1_0-u51812.017 4104 150831_barley_pseudomolecules CGCCCACCCCGGACACCCGCCTACCGCCAGCTCCCTCCACTTCGCCTCTCCTCCTGATTC GCACCGCTTCCCTTTTTGCCGTAAAACAAAACACCCCGACGTCACCCTCCAAACCCTAAC CCTAGAATCTAGAAGACGTCCATCTCCACCCCCGGCGCGCGCCCGACTACTCGGGGCAGC GGCGATGGGGAGGCGGAAGGAGCGCCGCCTGGCGGCCAAGGCGGCCTCGGGCCGTAGGGT CAAGCTCGACCTCTTCCTCGATCCTTCCCCCGGGGAGGCATCTACTAAAGAGGGAGTAGG GGAGGAAAACCGCGAGCAGCAAACTGGTGTTCCCACTTCACCATCTTCGTCAGGTGGGTT CAATCAATTTCCTTCCAAGGGATATGTAAAGACGGCACATGCCTATGGAATGTAAATTTG GTGGAAATTTGGAATTTTGTTCAAGCATGTGTATGCTCCAAATTTCTGGTTTGAGGCACA TGTAGGGTTCCCGGCCTGCAAGGAACACTGAGTAAATTCTTCAGATCAGGCTGCCACTGT CAAAACTGGGTGTGTTCCTACCGGTAATTTCTCTTTTGGCAGCATCTGAGCGTGGGGATT TCAGGATGATTGTTGCCTCGATAAGAAGGAAAATCCTCTAGCGTTGCTTGGGCAATATAG TGATGATGAAGAAGAGGATGAAGTAGCAACAGATCAACCCAATGGTGAAACTAAGGGAAG TTCAACTGATGCAAGTGCCAAGGTTTTTAACGATCATGGTGATGTAACTGGGGATAAAGG CGATGCAGATAGTGAACTGCCTGCTTCTGTTAGTGTTCAGCAGGAAGCATCTCAAGCCGA TGATGTAAAAACTATCACAGAAAATGTTGCTGAGGAATTTACTGTTGCCCCTGAGCCAAC TCTGGAAAATGAGTGTGTGACAGTAATGGAAGCTGTCCCAGATTCATCTGGCATGCAAAT CGTGGGTGACATTGGTGGGAATTGGAAGGCTATAATGCATGAACAAAGTAATCAGTGTTA CTACTGGAACACAGTTACAGGAGAAACTTCTTGGGAGATTCCTGATGGATTAGCTTCGGG GGTTGCTGGTGATGGAGTCACTTCTGCATCTGTGCCTACTCATATGGGCTACTCTGTAGA AGCTCAAGCACATGTCCTTCCCCACAGCAATGTTGAAGCATATCCTAGTGATGTATCTGT TGGGAATGGCACAGCAACCTATACTGCTATGGGAACTTATACTCATGATGCTTATGCTTA CACTGGAGCCGTCGCTAGTCATGAGTCAGTGGACATTGACCCCTTGCAGCTTGCAAAATA TGGTGAGGATTTACTGCAAAGATTGAAGCTGCTGGAAAGGCCACATGTTGCCATTGACAG TCTTGAGTTGATAAAAAGAGAAATTGAGATACGAGTAGCAGACTGTAATGCACTCTCCTC GTATGGATCTTCTTTACTTCCATTGTGGTTGCATGCTGAGGTGCACCTTAAGCAACTAGA ACTTTCAGTTTCCAAGTTTGAAGCTAGCTACACTACCAGACATGGATATCTGGAGACGGT GGATGCAGGACACAAAGCACCTAATGAAGCTAAAGTTATGGCACCCTCCGAGGGTGAGCA TTTGAAAGTTGATGTTAGCACTCTGGGAATTGGTACTGGCGATGAAAATATTAAGGTTGA GGAACCATGTACAACATCATCTGCTCAGAACTCACAATGTGTGGCAGCAGCTATTTTAAG AGTTGAATCAGACAGTGATGAAGATATGGACGTGGACATGGAGGTCGATGAAGAAGGTGT TGAAGAGCACGGCGGATTCACTTCTATGCCAAATAAGGAGCATCCTTCATCAGAGCAAGT ACGATCACCAGCTTTGTCATCATTGGAAGACTCTGCTCCTCCCCAACAGGATAATGACAT TCCTCCTCCACCACCACCACCAGAAGAGGAATGGATTCCACCTCCACCACCGGAGAATGA ACCAGCTCCTCCACCTCCTCCTGAGCCTGAAGAGCCTGCTGTGTCATTTGTTCATGCTGA TACACTTCCTCAGCCATACGGAGGTCAAGCAAACTTGGGTTATATGCTTCCAGGAATGGA GTACTATCCCGCTTCTGGTACAGATGGCACAAATGCCAGCTACTATATGCAAGCGAGCGA TTCTCATATTCTTCAATCGCAGCAGCATTCTTACTACGCACCGTTGTCTGCAAGTGGCGT ATCTATTCCTGTTGAGACCACATCGATCCCCCCAGTACCAGGTTCTTATTATAGCTATCC TTCTGTCACTATGGCTGCCACTGAAGTAGCGGCTGAATCTTCTGGATACTATGGTTCATC AACCTCTGCCATTTCTAGCGGTGAATTAGATAACAAAACAAGCTCAGCCTCCCTTGTTTC AAATAGTAATGTGAATCCTGTGGAGTCTGATAAAGTGATATCCAAGGAGCCTACAGTTGT TTCTTTGAGCCAATCAGTAGGGGCAGCCTCAGCTTCAGCACCAACAGTACATGGTAGTTC TACTCTAGCTTCTACTAGTACCACTAATCAGACTAAAGGTAATTTATTATTCTTTGCAAG GATACTTAATGTTACTAGCTCGTACTCCCTCCGTTCCTAAATATAAGTCCTTTTAGAGGT TCTACTAGGGGATTACATACGAATGTATATAGACATACTTTAGAGTGTAGATTCTTTCAT TTTGCTCCGTATGTAGTCCTCTAATGAAATCTTTAAAAAGACTTATATTTAGGAACGGAG GGAGTAGTTGTTTTAGTTTTGACATTTGCACTGATTTGCAGTTCCTCGTACTAAGAAGCG ACCTGTTGCTGTTGCATCATCACTGAGATCTAATAAGAAGGTCTCAAGTCTGGTGGATAA GGTATCTCCCTGACCTCCCAAAGCTGCTGTTAAAATAGTGACCATCTCTGCTCTCTCCTA CCCTACCATCAACTGCTCCCAAGTGTGGTGCTTGACATCAATGAAGAAATTTAACTCACT GCATGATATGCATTATTGCTAATGGTGTATACTTAGTCGTTGAGACATACTCTTGGTTAT GTTATTAGCAAGAGAGCACACTGTCCTCGGCCAGTTTATTTCGTGGTGCACAACATTGGT CCTCCAGAAAAAAAACTCATGCAAGTGGGAGTATGGCCGTGTTTCCTGACTATTTCGTCT CATGTTTATCATTTCTTATTTTAAAGGCAGAGCAATCTGTTTACATGGTAATTGGTAAGG CTTAAGACAAGGTGAGTGTTGATGTATAATGATTGTTTCCTTATTAATCTACCTTTACTA AAGCGACCTTTTATTTTATTTTATTTCACTATTACAGTGGAAAGCTGCAAAAGAGGAGCT TTGTGATGAAGAGGAAGAGGAGCCTGAAGATGCTTTGGAGTACCTAGAAAGGAAACGTCG GAAGGAAATAGATGGGTGGCGTAAGCAACAAATAGCTAGTGGAGAAGCTAAGGAAAATGC TAATTTTGTTCCCCTTGGCGGTAACTGGCGTGACCGTGTAAAACGCAAAAGAGCTGAAGC AAAGAAGGAAGCAAAGACTGAATCTGTTTGTGCAGCTGCCGAACAACACAAAGGAGAGCC TGATCTCTCAGAGCTTTCCAAGGGTCTCCCTTCTGGGTGGCAGGCATACATAGACGAGTC TACGAAGCAAGTGTACTATGGGAACAACCTCACTTCCGAGACTACTTGGGATCGGCCTAG CAAATAAAGATTGAACTAGTTGAAGATGGTCCAGTTTTGCTCTGTAGATATCCTCATACA TCTATACGTTGCCTGTCTGGTTATGAGGCTGTATTGTTTCTTTTATTTTCCACTGGGAGA TCGTAGCAGGAAGGATACTTCATTTTGGTATATAGAGGCATCCCTTGTAAGAGTGGCAAC TTGAGATCGAATTACTGAAGCAAAAAATACTAGTTAGTTGCTGACCAAGGAAAAATGTGC CTTGTTAAGTGGTGGGAGTCTTTACCTCGATCTGATACCATTTGCTTTCAAAACAATGTC AATTATATTCGATTTTAGGTTGTGCTAAATTCTAGACTTCTCCAATTATTTAACATTAGA AAGAAAGATGATTTTTAAGTTTTT
Protein Sequence (564 aa)
>BART1_0-u51812.017 564 150831_barley_pseudomolecules MEAVPDSSGMQIVGDIGGNWKAIMHEQSNQCYYWNTVTGETSWEIPDGLASGVAGDGVTS ASVPTHMGYSVEAQAHVLPHSNVEAYPSDVSVGNGTATYTAMGTYTHDAYAYTGAVASHE SVDIDPLQLAKYGEDLLQRLKLLERPHVAIDSLELIKREIEIRVADCNALSSYGSSLLPL WLHAEVHLKQLELSVSKFEASYTTRHGYLETVDAGHKAPNEAKVMAPSEGEHLKVDVSTL GIGTGDENIKVEEPCTTSSAQNSQCVAAAILRVESDSDEDMDVDMEVDEEGVEEHGGFTS MPNKEHPSSEQVRSPALSSLEDSAPPQQDNDIPPPPPPPEEEWIPPPPPENEPAPPPPPE PEEPAVSFVHADTLPQPYGGQANLGYMLPGMEYYPASGTDGTNASYYMQASDSHILQSQQ HSYYAPLSASGVSIPVETTSIPPVPGSYYSYPSVTMAATEVAAESSGYYGSSTSAISSGE LDNKTSSASLVSNSNVNPVESDKVISKEPTVVSLSQSVGAASASAPTVHGSSTLASTSTT NQTKGNLLFFARILNVTSSYSLRS