- Transcript BART1_0-u51812.016
- Transcript IDBART1_0-u51812.016
- Gene IDBART1_0-u51812
Barley RTD
Exon Structure of BART1_0-u51812.016
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 140679678 | 140679406 | + |
| chr7H | 2 | 140680474 | 140680127 | + |
| chr7H | 3 | 140680803 | 140680682 | + |
| chr7H | 4 | 140681781 | 140681165 | + |
| chr7H | 5 | 140683083 | 140681885 | + |
| chr7H | 6 | 140683501 | 140683422 | + |
| chr7H | 7 | 140683871 | 140683827 | + |
| chr7H | 8 | 140684053 | 140683958 | + |
| chr7H | 9 | 140684216 | 140684143 | + |
| chr7H | 10 | 140684701 | 140684566 | + |
| chr7H | 11 | 140685433 | 140684971 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.000493793 | 0.944934 | 0.000000625794 |
| morex | ETI | 1.06027 | 5.00637 | 7.07683 |
| morex | LEA | 0.00000485046 | 0.524926 | 1.11674 |
| morex | EPI | 1.77513 | 0.000033495 | 2.16373 |
| morex | ROO | 0.585562 | 0.188351 | 0.0000247799 |
| morex | ROO2 | 2.08726 | 3.09432 | 1.43071 |
| morex | NOD | 1.53671 | 3.16077 | 2.20114 |
| morex | RAC | 1.98574 | 1.88758 | 1.29688 |
| morex | INF1 | 2.00019 | 0.000195237 | 0.0000000418059 |
| morex | INF2 | 6.36717 | 6.15269 | 2.34628 |
| morex | CAR5 | 0.71769 | 1.56703 | 1.71275 |
| morex | CAR15 | 0 | 0.000000802449 | 1.07485 |
| morex | LEM | 4.41373 | 3.27705 | 3.16136 |
| morex | LOD | 1.50829 | 2.42921 | 1.70724 |
| morex | PAL | 1.87265 | 3.72732 | 3.59083 |
| morex | SEN | 2.3445 | 1.07646 | 1.92615 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os06g19470.2 | +3 | 0.0 | 772 | 532/828 (64%) | protein|WW domain containing protein, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g43210.1.p | +3 | 0.0 | 909 | 611/827 (74%) | pacid=32799652 transcript=Bradi1g43210.1 locus=Bradi1g43210 ID=Bradi1g43210.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3453 bp)
>BART1_0-u51812.016 3453 150831_barley_pseudomolecules GCGCCCACCCCGGACACCCGCCTACCGCCAGCTCCCTCCACTTCGCCTCTCCTCCTGATT CGCACCGCTTCCCTTTTTGCCGTAAAACAAAACACCCCGACGTCACCCTCCAAACCCTAA CCCTAGAATCTAGAAGACGTCCATCTCCACCCCCGGCGCGCGCCCGACTACTCGGGGCAG CGGCGATGGGGAGGCGGAAGGAGCGCCGCCTGGCGGCCAAGGCGGCCTCGGGCCGTAGGG TCAAGCTCGACCTCTTCCTCGATCCTTCCCCCGGGGAGGCATCTACTAAAGAGGGAGTAG GGGAGGAAAACCGCGAGCAGCAAACTGGTGTTCCCACTTCACCATCTTCGTCAGGTGGGT TCAATCAATTTCCTTCCAAGGGATATGTAAAGACGGCACATGCCTATGGAATGTAAATTT GGTGGAAATTTGGAATTTTGTTCAAGCATGTGTATGCTCCAAATTTCTGGTTTGAGGCAC ATGTAGGGTTCCCGGCCTGCAAGGAACACTGAGTAAATTCTTCAGATCAGGCTGCCACTG TCAAAACTGGGTGTGTTCCTACCGGTAATTTCTCTTTTGGCAGCATCTGAGCGTGGGGAT TTCAGGATGATTGTTGCCTCGATAAGAAGGAAAATCCTCTAGCGTTGCTTGGGCAATATA GTGATGATGAAGAAGAGGATGAAGTAGCAACAGATCAACCCAATGGTGAAACTAAGGGAA GTTCAACTGATGCAAGTGCCAAGGTTTTTAACGATCATGGTGATGTAACTGGGGATAAAG GCGATGCAGATAGTGAACTGCCTGCTTCTGTTAGTGTTCAGCAGGAAGCATCTCAAGCCG ATGATGTAAAAACTATCACAGAAAATGTTGCTGAGGAATTTACTGTTGCCCCTGAGCCAA CTCTGGAAAATGAGTGTGTGACAGTAATGGAAGCTGTCCCAGATTCATCTGGCATGCAAA TCGTGGGTGACATTGGTGGGAATTGGAAGGCTATAATGCATGAACAAAGTAATCAGTGTT ACTACTGGAACACAGTTACAGGAGAAACTTCTTGGGAGATTCCTGATGGATTAGCTTCGG GGGTTGCTGGTGATGGAGTCACTTCTGCATCTGTGCCTACTCATATGGGCTACTCTGTAG AAGCTCAAGCACATGTCCTTCCCCACAGCAATGTTGAAGCATATCCTAGTGATGTATCTG TTGGGAATGGCACAGCAACCTATACTGCTATGGGAACTTATACTCATGATGCTTATGCTT ACACTGGAGCCGTCGCTAGTCATGAGTCAGTGGACATTGACCCCTTGCAGCTTGCAAAAT ATGGTGAGGATTTACTGCAAAGATTGAAGCTGCTGGAAAGGCCACATGTTGCCATTGACA GTCTTGAGTTGATAAAAAGAGAAATTGAGATACGAGTAGCAGACTGTAATGCACTCTCCT CGTATGGATCTTCTTTACTTCCATTGTGGTTGCATGCTGAGGTGCACCTTAAGCAACTAG AACTTTCAGTTTCCAAGTTTGAAGCTAGCTACACTACCAGACATGGATATCTGGAGACGG TGGATGCAGGACACAAAGCACCTAATGAAGCTAAAGTTATGGCACCCTCCGAGGGTGAGC ATTTGAAAGTTGATGTTAGCACTCTGGGAATTGGTACTGGCGATGAAAATATTAAGGTTG AGGAACCATGTACAACATCATCTGCTCAGAACTCACAATGTGTGGCAGCAGCTATTTTAA GAGTTGAATCAGACAGTGATGAAGATATGGACGTGGACATGGAGGTCGATGAAGAAGGTG TTGAAGAGCACGGCGGATTCACTTCTATGCCAAATAAGGAGCATCCTTCATCAGAGCAAG TACGATCACCAGCTTTGTCATCATTGGAAGACTCTGCTCCTCCCCAACAGGATAATGACA TTCCTCCTCCACCACCACCACCAGAAGAGGAATGGATTCCACCTCCACCACCGGAGAATG AACCAGCTCCTCCACCTCCTCCTGAGCCTGAAGAGCCTGCTGTGTCATTTGTTCATGCTG ATACACTTCCTCAGCCATACGGAGGTCAAGCAAACTTGGGTTATATGCTTCCAGGAATGG AGTACTATCCCGCTTCTGGTACAGATGGCACAAATGCCAGCTACTATATGCAAGCGAGCG ATTCTCATATTCTTCAATCGCAGCAGCATTCTTACTACGCACCGTTGTCTGCAAGTGGCG TATCTATTCCTGTTGAGACCACATCGATCCCCCCAGTACCAGGTTCTTATTATAGCTATC CTTCTGTCACTATGGCTGCCACTGAAGTAGCGGCTGAATCTTCTGGATACTATGGTTCAT CAACCTCTGCCATTTCTAGCGGTGAATTAGATAACAAAACAAGCTCAGCCTCCCTTGTTT CAAATAGTAATGTGAATCCTGTGGAGTCTGATAAAGTGATATCCAAGGAGCCTACAGTTG TTTCTTTGAGCCAATCAGTAGGGGCAGCCTCAGCTTCAGCACCAACAGTACATGGTAGTT CTACTCTAGCTTCTACTAGTACCACTAATCAGACTAAAGTTCCTCGTACTAAGAAGCGAC CTGTTGCTGTTGCATCATCACTGAGATCTAATAAGAAGGTCTCAAGTCTGGTGGATAAGG CAGAGCAATCTGTTTACATGGTAATTGGTAAGGCTTAAGACAAGTGGAAAGCTGCAAAAG AGGAGCTTTGTGATGAAGAGGAAGAGGAGCCTGAAGATGCTTTGGAGTACCTAGAAAGGA AACGTCGGAAGGAAATAGATGGGTGGCGTAAGCAACAAATAGCTAGTGGAGAAGCTAAGG AAAATGCTAATTTTGTTCCCCTTGGCGGTAACTGGCGTGACCGTGTAAAACGCAAAAGAG CTGAAGCAAAGAAGGAAGCAAAGACTGAATCTGTTTGTGCAGCTGCCGAACAACACAAAG GAGAGCCTGATCTCTCAGAGCTTTCCAAGGGTCTCCCTTCTGGGTGGCAGGCATACATAG ACGAGTCTACGAAGCAAGTGTACTATGGGAACAACCTCACTTCCGAGACTACTTGGGATC GGCCTAGCAAATAAAGATTGAACTAGTTGAAGATGGTCCAGTTTTGCTCTGTAGATATCC TCATACATCTATACGTTGCCTGTCTGGTTATGAGGCTGTATTGTTTCTTTTATTTTCCAC TGGGAGATCGTAGCAGGAAGGATACTTCATTTTGGTATATAGAGGCATCCCTTGTAAGAG TGGCAACTTGAGATCGAATTACTGAAGCAAAAAATACTAGTTAGTTGCTGACCAAGGAAA AATGTGCCTTGTTAAGTGGTGGGAGTCTTTACCTCGATCTGATACCATTTGCTTTCAAAA CAATGTCAATTATATTCGATTTTAGGTTGTGCTAAATTCTAGACTTCTCCAATTATTTAA CATTAGAAAGAAAGATGATTTTTAAGTTTTTTT
Protein Sequence (583 aa)
>BART1_0-u51812.016 583 150831_barley_pseudomolecules MEAVPDSSGMQIVGDIGGNWKAIMHEQSNQCYYWNTVTGETSWEIPDGLASGVAGDGVTS ASVPTHMGYSVEAQAHVLPHSNVEAYPSDVSVGNGTATYTAMGTYTHDAYAYTGAVASHE SVDIDPLQLAKYGEDLLQRLKLLERPHVAIDSLELIKREIEIRVADCNALSSYGSSLLPL WLHAEVHLKQLELSVSKFEASYTTRHGYLETVDAGHKAPNEAKVMAPSEGEHLKVDVSTL GIGTGDENIKVEEPCTTSSAQNSQCVAAAILRVESDSDEDMDVDMEVDEEGVEEHGGFTS MPNKEHPSSEQVRSPALSSLEDSAPPQQDNDIPPPPPPPEEEWIPPPPPENEPAPPPPPE PEEPAVSFVHADTLPQPYGGQANLGYMLPGMEYYPASGTDGTNASYYMQASDSHILQSQQ HSYYAPLSASGVSIPVETTSIPPVPGSYYSYPSVTMAATEVAAESSGYYGSSTSAISSGE LDNKTSSASLVSNSNVNPVESDKVISKEPTVVSLSQSVGAASASAPTVHGSSTLASTSTT NQTKVPRTKKRPVAVASSLRSNKKVSSLVDKAEQSVYMVIGKA