- Transcript BART1_0-u51812.015
- Transcript IDBART1_0-u51812.015
- Gene IDBART1_0-u51812
Barley RTD
Exon Structure of BART1_0-u51812.015
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 140679678 | 140679402 | + |
| chr7H | 2 | 140680474 | 140680127 | + |
| chr7H | 3 | 140680803 | 140680682 | + |
| chr7H | 4 | 140681781 | 140681165 | + |
| chr7H | 5 | 140683178 | 140681885 | + |
| chr7H | 6 | 140684053 | 140683422 | + |
| chr7H | 7 | 140684216 | 140684143 | + |
| chr7H | 8 | 140684701 | 140684566 | + |
| chr7H | 9 | 140685432 | 140684971 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.0042772 | 0.00168787 | 0.0108445 |
| morex | ETI | 0.0000000048733 | 0.00000974466 | 0.00000319747 |
| morex | LEA | 0.650886 | 0.0618122 | 0.0362568 |
| morex | EPI | 0.000136906 | 0.00000812554 | 0.0808938 |
| morex | ROO | 0.000629367 | 0.254608 | 0.00128882 |
| morex | ROO2 | 0.228053 | 0.167557 | 0.0000281844 |
| morex | NOD | 0.000375976 | 0.00000003182 | 0.00000284761 |
| morex | RAC | 0.338337 | 0.300005 | 0.258207 |
| morex | INF1 | 0.0482907 | 0.0972695 | 0.208549 |
| morex | INF2 | 0.0844007 | 5.90784 | 0.129206 |
| morex | CAR5 | 0.183539 | 0.00298544 | 0.0395502 |
| morex | CAR15 | 0.0155884 | 0.0839466 | 0.0193589 |
| morex | LEM | 0.0955247 | 0.00166968 | 0.0668346 |
| morex | LOD | 0.136249 | 0.134609 | 0.494903 |
| morex | PAL | 0.0000000779947 | 0.00609176 | 0.0617054 |
| morex | SEN | 1.5844 | 0.234273 | 0.899552 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os06g19470.2 | +1 | 0.0 | 587 | 408/653 (62%) | protein|WW domain containing protein, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g43210.1.p | +1 | 0.0 | 700 | 474/655 (72%) | pacid=32799652 transcript=Bradi1g43210.1 locus=Bradi1g43210 ID=Bradi1g43210.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3962 bp)
>BART1_0-u51812.015 3962 150831_barley_pseudomolecules CGAAGCGCCCACCCCGGACACCCGCCTACCGCCAGCTCCCTCCACTTCGCCTCTCCTCCT GATTCGCACCGCTTCCCTTTTTGCCGTAAAACAAAACACCCCGACGTCACCCTCCAAACC CTAACCCTAGAATCTAGAAGACGTCCATCTCCACCCCCGGCGCGCGCCCGACTACTCGGG GCAGCGGCGATGGGGAGGCGGAAGGAGCGCCGCCTGGCGGCCAAGGCGGCCTCGGGCCGT AGGGTCAAGCTCGACCTCTTCCTCGATCCTTCCCCCGGGGAGGCATCTACTAAAGAGGGA GTAGGGGAGGAAAACCGCGAGCAGCAAACTGGTGTTCCCACTTCACCATCTTCGTCAGGT GGGTTCAATCAATTTCCTTCCAAGGGATATGTAAAGACGGCACATGCCTATGGAATGTAA ATTTGGTGGAAATTTGGAATTTTGTTCAAGCATGTGTATGCTCCAAATTTCTGGTTTGAG GCACATGTAGGGTTCCCGGCCTGCAAGGAACACTGAGTAAATTCTTCAGATCAGGCTGCC ACTGTCAAAACTGGGTGTGTTCCTACCGGTAATTTCTCTTTTGGCAGCATCTGAGCGTGG GGATTTCAGGATGATTGTTGCCTCGATAAGAAGGAAAATCCTCTAGCGTTGCTTGGGCAA TATAGTGATGATGAAGAAGAGGATGAAGTAGCAACAGATCAACCCAATGGTGAAACTAAG GGAAGTTCAACTGATGCAAGTGCCAAGGTTTTTAACGATCATGGTGATGTAACTGGGGAT AAAGGCGATGCAGATAGTGAACTGCCTGCTTCTGTTAGTGTTCAGCAGGAAGCATCTCAA GCCGATGATGTAAAAACTATCACAGAAAATGTTGCTGAGGAATTTACTGTTGCCCCTGAG CCAACTCTGGAAAATGAGTGTGTGACAGTAATGGAAGCTGTCCCAGATTCATCTGGCATG CAAATCGTGGGTGACATTGGTGGGAATTGGAAGGCTATAATGCATGAACAAAGTAATCAG TGTTACTACTGGAACACAGTTACAGGAGAAACTTCTTGGGAGATTCCTGATGGATTAGCT TCGGGGGTTGCTGGTGATGGAGTCACTTCTGCATCTGTGCCTACTCATATGGGCTACTCT GTAGAAGCTCAAGCACATGTCCTTCCCCACAGCAATGTTGAAGCATATCCTAGTGATGTA TCTGTTGGGAATGGCACAGCAACCTATACTGCTATGGGAACTTATACTCATGATGCTTAT GCTTACACTGGAGCCGTCGCTAGTCATGAGTCAGTGGACATTGACCCCTTGCAGCTTGCA AAATATGGTGAGGATTTACTGCAAAGATTGAAGCTGCTGGAAAGGCCACATGTTGCCATT GACAGTCTTGAGTTGATAAAAAGAGAAATTGAGATACGAGTAGCAGACTGTAATGCACTC TCCTCGTATGGATCTTCTTTACTTCCATTGTGGTTGCATGCTGAGGTGCACCTTAAGCAA CTAGAACTTTCAGTTTCCAAGTTTGAAGCTAGCTACACTACCAGACATGGATATCTGGAG ACGGTGGATGCAGGACACAAAGCACCTAATGAAGCTAAAGTTATGGCACCCTCCGAGGGT GAGCATTTGAAAGTTGATGTTAGCACTCTGGGAATTGGTACTGGCGATGAAAATATTAAG GTTGAGGAACCATGTACAACATCATCTGCTCAGAACTCACAATGTGTGGCAGCAGCTATT TTAAGAGTTGAATCAGACAGTGATGAAGATATGGACGTGGACATGGAGGTCGATGAAGAA GGTGTTGAAGAGCACGGCGGATTCACTTCTATGCCAAATAAGGAGCATCCTTCATCAGAG CAAGTACGATCACCAGCTTTGTCATCATTGGAAGACTCTGCTCCTCCCCAACAGGATAAT GACATTCCTCCTCCACCACCACCACCAGAAGAGGAATGGATTCCACCTCCACCACCGGAG AATGAACCAGCTCCTCCACCTCCTCCTGAGCCTGAAGAGCCTGCTGTGTCATTTGTTCAT GCTGATACACTTCCTCAGCCATACGGAGGTCAAGCAAACTTGGGTTATATGCTTCCAGGA ATGGAGTACTATCCCGCTTCTGGTACAGATGGCACAAATGCCAGCTACTATATGCAAGCG AGCGATTCTCATATTCTTCAATCGCAGCAGCATTCTTACTACGCACCGTTGTCTGCAAGT GGCGTATCTATTCCTGTTGAGACCACATCGATCCCCCCAGTACCAGGTTCTTATTATAGC TATCCTTCTGTCACTATGGCTGCCACTGAAGTAGCGGCTGAATCTTCTGGATACTATGGT TCATCAACCTCTGCCATTTCTAGCGGTGAATTAGATAACAAAACAAGCTCAGCCTCCCTT GTTTCAAATAGTAATGTGAATCCTGTGGAGTCTGATAAAGTGATATCCAAGGAGCCTACA GTTGTTTCTTTGAGCCAATCAGTAGGGGCAGCCTCAGCTTCAGCACCAACAGTACATGGT AGTTCTACTCTAGCTTCTACTAGTACCACTAATCAGACTAAAGGTAATTTATTATTCTTT GCAAGGATACTTAATGTTACTAGCTCGTACATGGTAGTTCTACTCTAGCTTCTACTAGTA CCACTAATCAGACTAAAGTTCCTCGTACTAAGAAGCGACCTGTTGCTGTTGCATCATCAC TGAGATCTAATAAGAAGGTCTCAAGTCTGGTGGATAAGGTATCTCCCTGACCTCCCAAAG CTGCTGTTAAAATAGTGACCATCTCTGCTCTCTCCTACCCTACCATCAACTGCTCCCAAG TGTGGTGCTTGACATCAATGAAGAAATTTAACTCACTGCATGATATGCATTATTGCTAAT GGTGTATACTTAGTCGTTGAGACATACTCTTGGTTATGTTATTAGCAAGAGAGCACACTG TCCTCGGCCAGTTTATTTCGTGGTGCACAACATTGGTCCTCCAGAAAAAAAACTCATGCA AGTGGGAGTATGGCCGTGTTTCCTGACTATTTCGTCTCATGTTTATCATTTCTTATTTTA AAGGCAGAGCAATCTGTTTACATGGTAATTGGTAAGGCTTAAGACAAGGTGAGTGTTGAT GTATAATGATTGTTTCCTTATTAATCTACCTTTACTAAAGCGACCTTTTATTTTATTTTA TTTCACTATTACAGTGGAAAGCTGCAAAAGAGGAGCTTTGTGATGAAGAGGAAGAGGAGC CTGAAGATGCTTTGGAGTACCTAGAAAGGAAACGTCGGAAGGAAATAGATGGGTGGCGTA AGCAACAAATAGCTAGTGGAGAAGCTAAGGAAAATGCTAATTTTGTTCCCCTTGGCGGTA ACTGGCGTGACCGTGTAAAACGCAAAAGAGCTGAAGCAAAGAAGGAAGCAAAGACTGAAT CTGTTTGTGCAGCTGCCGAACAACACAAAGGAGAGCCTGATCTCTCAGAGCTTTCCAAGG GTCTCCCTTCTGGGTGGCAGGCATACATAGACGAGTCTACGAAGCAAGTGTACTATGGGA ACAACCTCACTTCCGAGACTACTTGGGATCGGCCTAGCAAATAAAGATTGAACTAGTTGA AGATGGTCCAGTTTTGCTCTGTAGATATCCTCATACATCTATACGTTGCCTGTCTGGTTA TGAGGCTGTATTGTTTCTTTTATTTTCCACTGGGAGATCGTAGCAGGAAGGATACTTCAT TTTGGTATATAGAGGCATCCCTTGTAAGAGTGGCAACTTGAGATCGAATTACTGAAGCAA AAAATACTAGTTAGTTGCTGACCAAGGAAAAATGTGCCTTGTTAAGTGGTGGGAGTCTTT ACCTCGATCTGATACCATTTGCTTTCAAAACAATGTCAATTATATTCGATTTTAGGTTGT GCTAAATTCTAGACTTCTCCAATTATTTAACATTAGAAAGAAAGATGATTTTTAAGTTTT TT
Protein Sequence (565 aa)
>BART1_0-u51812.015 565 150831_barley_pseudomolecules MEAVPDSSGMQIVGDIGGNWKAIMHEQSNQCYYWNTVTGETSWEIPDGLASGVAGDGVTS ASVPTHMGYSVEAQAHVLPHSNVEAYPSDVSVGNGTATYTAMGTYTHDAYAYTGAVASHE SVDIDPLQLAKYGEDLLQRLKLLERPHVAIDSLELIKREIEIRVADCNALSSYGSSLLPL WLHAEVHLKQLELSVSKFEASYTTRHGYLETVDAGHKAPNEAKVMAPSEGEHLKVDVSTL GIGTGDENIKVEEPCTTSSAQNSQCVAAAILRVESDSDEDMDVDMEVDEEGVEEHGGFTS MPNKEHPSSEQVRSPALSSLEDSAPPQQDNDIPPPPPPPEEEWIPPPPPENEPAPPPPPE PEEPAVSFVHADTLPQPYGGQANLGYMLPGMEYYPASGTDGTNASYYMQASDSHILQSQQ HSYYAPLSASGVSIPVETTSIPPVPGSYYSYPSVTMAATEVAAESSGYYGSSTSAISSGE LDNKTSSASLVSNSNVNPVESDKVISKEPTVVSLSQSVGAASASAPTVHGSSTLASTSTT NQTKGNLLFFARILNVTSSYMVVLL