- Transcript BART1_0-u51812.010
- Transcript IDBART1_0-u51812.010
- Gene IDBART1_0-u51812
Barley RTD
Exon Structure of BART1_0-u51812.010
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 140679678 | 140679396 | + |
| chr7H | 2 | 140680207 | 140680127 | + |
| chr7H | 3 | 140680803 | 140680682 | + |
| chr7H | 4 | 140681781 | 140681165 | + |
| chr7H | 5 | 140683083 | 140681885 | + |
| chr7H | 6 | 140684053 | 140683179 | + |
| chr7H | 7 | 140684216 | 140684143 | + |
| chr7H | 8 | 140684701 | 140684566 | + |
| chr7H | 9 | 140685411 | 140684971 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.237909 | 0.000694107 | 0.0010232 |
| morex | ETI | 0.0000000482881 | 0.0000428308 | 0.0000031046 |
| morex | LEA | 0.00657386 | 0.000857894 | 0.0000452022 |
| morex | EPI | 0.00149743 | 0.0158383 | 0.633026 |
| morex | ROO | 0 | 0.0122106 | 0.216764 |
| morex | ROO2 | 1.0253 | 0.700725 | 0.000110687 |
| morex | NOD | 0.00131861 | 0.000000491077 | 0.0000372524 |
| morex | RAC | 2.16301 | 2.11923 | 1.1419 |
| morex | INF1 | 0.464061 | 0.0319406 | 1.95499 |
| morex | INF2 | 0.33147 | 11.9941 | 1.46137 |
| morex | CAR5 | 2.64507 | 0.0564401 | 0.00793124 |
| morex | CAR15 | 0.00110561 | 0.335453 | 0.385693 |
| morex | LEM | 0.385678 | 0.000000452972 | 0.311009 |
| morex | LOD | 0.0179563 | 0.0197788 | 0.639434 |
| morex | PAL | 0.000000101522 | 0.202268 | 1.80384 |
| morex | SEN | 2.18005 | 1.26256 | 2.09271 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os06g19470.2 | +1 | 0.0 | 642 | 444/711 (62%) | protein|WW domain containing protein, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g43210.1.p | +1 | 0.0 | 773 | 511/697 (73%) | pacid=32799652 transcript=Bradi1g43210.1 locus=Bradi1g43210 ID=Bradi1g43210.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3828 bp)
>BART1_0-u51812.010 3828 150831_barley_pseudomolecules CTCAACCGAAGCGCCCACCCCGGACACCCGCCTACCGCCAGCTCCCTCCACTTCGCCTCT CCTCCTGATTCGCACCGCTTCCCTTTTTGCCGTAAAACAAAACACCCCGACGTCACCCTC CAAACCCTAACCCTAGAATCTAGAAGACGTCCATCTCCACCCCCGGCGCGCGCCCGACTA CTCGGGGCAGCGGCGATGGGGAGGCGGAAGGAGCGCCGCCTGGCGGCCAAGGCGGCCTCG GGCCGTAGGGTCAAGCTCGACCTCTTCCTCGATCCTTCCCCCGGGGAGGCATCTACTAAA GAGGGAGTAGGGGAGGAAAACCGCGAGCAGCAAACTGGTGTTCCCACTTCACCATCTTCG TCAGATAAGAAGGAAAATCCTCTAGCGTTGCTTGGGCAATATAGTGATGATGAAGAAGAG GATGAAGTAGCAACAGATCAACCCAATGGTGAAACTAAGGGAAGTTCAACTGATGCAAGT GCCAAGGTTTTTAACGATCATGGTGATGTAACTGGGGATAAAGGCGATGCAGATAGTGAA CTGCCTGCTTCTGTTAGTGTTCAGCAGGAAGCATCTCAAGCCGATGATGTAAAAACTATC ACAGAAAATGTTGCTGAGGAATTTACTGTTGCCCCTGAGCCAACTCTGGAAAATGAGTGT GTGACAGTAATGGAAGCTGTCCCAGATTCATCTGGCATGCAAATCGTGGGTGACATTGGT GGGAATTGGAAGGCTATAATGCATGAACAAAGTAATCAGTGTTACTACTGGAACACAGTT ACAGGAGAAACTTCTTGGGAGATTCCTGATGGATTAGCTTCGGGGGTTGCTGGTGATGGA GTCACTTCTGCATCTGTGCCTACTCATATGGGCTACTCTGTAGAAGCTCAAGCACATGTC CTTCCCCACAGCAATGTTGAAGCATATCCTAGTGATGTATCTGTTGGGAATGGCACAGCA ACCTATACTGCTATGGGAACTTATACTCATGATGCTTATGCTTACACTGGAGCCGTCGCT AGTCATGAGTCAGTGGACATTGACCCCTTGCAGCTTGCAAAATATGGTGAGGATTTACTG CAAAGATTGAAGCTGCTGGAAAGGCCACATGTTGCCATTGACAGTCTTGAGTTGATAAAA AGAGAAATTGAGATACGAGTAGCAGACTGTAATGCACTCTCCTCGTATGGATCTTCTTTA CTTCCATTGTGGTTGCATGCTGAGGTGCACCTTAAGCAACTAGAACTTTCAGTTTCCAAG TTTGAAGCTAGCTACACTACCAGACATGGATATCTGGAGACGGTGGATGCAGGACACAAA GCACCTAATGAAGCTAAAGTTATGGCACCCTCCGAGGGTGAGCATTTGAAAGTTGATGTT AGCACTCTGGGAATTGGTACTGGCGATGAAAATATTAAGGTTGAGGAACCATGTACAACA TCATCTGCTCAGAACTCACAATGTGTGGCAGCAGCTATTTTAAGAGTTGAATCAGACAGT GATGAAGATATGGACGTGGACATGGAGGTCGATGAAGAAGGTGTTGAAGAGCACGGCGGA TTCACTTCTATGCCAAATAAGGAGCATCCTTCATCAGAGCAAGTACGATCACCAGCTTTG TCATCATTGGAAGACTCTGCTCCTCCCCAACAGGATAATGACATTCCTCCTCCACCACCA CCACCAGAAGAGGAATGGATTCCACCTCCACCACCGGAGAATGAACCAGCTCCTCCACCT CCTCCTGAGCCTGAAGAGCCTGCTGTGTCATTTGTTCATGCTGATACACTTCCTCAGCCA TACGGAGGTCAAGCAAACTTGGGTTATATGCTTCCAGGAATGGAGTACTATCCCGCTTCT GGTACAGATGGCACAAATGCCAGCTACTATATGCAAGCGAGCGATTCTCATATTCTTCAA TCGCAGCAGCATTCTTACTACGCACCGTTGTCTGCAAGTGGCGTATCTATTCCTGTTGAG ACCACATCGATCCCCCCAGTACCAGGTTCTTATTATAGCTATCCTTCTGTCACTATGGCT GCCACTGAAGTAGCGGCTGAATCTTCTGGATACTATGGTTCATCAACCTCTGCCATTTCT AGCGGTGAATTAGATAACAAAACAAGCTCAGCCTCCCTTGTTTCAAATAGTAATGTGAAT CCTGTGGAGTCTGATAAAGTGATATCCAAGGAGCCTACAGTTGTTTCTTTGAGCCAATCA GTAGGGGCAGCCTCAGCTTCAGCACCAACAGTACATGGTAGTTCTACTCTAGCTTCTACT AGTACCACTAATCAGACTAAAGGTAATTTATTATTCTTTGCAAGGATACTTAATGTTACT AGCTCGTACTCCCTCCGTTCCTAAATATAAGTCCTTTTAGAGGTTCTACTAGGGGATTAC ATACGAATGTATATAGACATACTTTAGAGTGTAGATTCTTTCATTTTGCTCCGTATGTAG TCCTCTAATGAAATCTTTAAAAAGACTTATATTTAGGAACGGAGGGAGTAGTTGTTTTAG TTTTGACATTTGCACTGATTTGCAGTTCCTCGTACTAAGAAGCGACCTGTTGCTGTTGCA TCATCACTGAGATCTAATAAGAAGGTCTCAAGTCTGGTGGATAAGGTATCTCCCTGACCT CCCAAAGCTGCTGTTAAAATAGTGACCATCTCTGCTCTCTCCTACCCTACCATCAACTGC TCCCAAGTGTGGTGCTTGACATCAATGAAGAAATTTAACTCACTGCATGATATGCATTAT TGCTAATGGTGTATACTTAGTCGTTGAGACATACTCTTGGTTATGTTATTAGCAAGAGAG CACACTGTCCTCGGCCAGTTTATTTCGTGGTGCACAACATTGGTCCTCCAGAAAAAAAAC TCATGCAAGTGGGAGTATGGCCGTGTTTCCTGACTATTTCGTCTCATGTTTATCATTTCT TATTTTAAAGGCAGAGCAATCTGTTTACATGGTAATTGGTAAGGCTTAAGACAAGGTGAG TGTTGATGTATAATGATTGTTTCCTTATTAATCTACCTTTACTAAAGCGACCTTTTATTT TATTTTATTTCACTATTACAGTGGAAAGCTGCAAAAGAGGAGCTTTGTGATGAAGAGGAA GAGGAGCCTGAAGATGCTTTGGAGTACCTAGAAAGGAAACGTCGGAAGGAAATAGATGGG TGGCGTAAGCAACAAATAGCTAGTGGAGAAGCTAAGGAAAATGCTAATTTTGTTCCCCTT GGCGGTAACTGGCGTGACCGTGTAAAACGCAAAAGAGCTGAAGCAAAGAAGGAAGCAAAG ACTGAATCTGTTTGTGCAGCTGCCGAACAACACAAAGGAGAGCCTGATCTCTCAGAGCTT TCCAAGGGTCTCCCTTCTGGGTGGCAGGCATACATAGACGAGTCTACGAAGCAAGTGTAC TATGGGAACAACCTCACTTCCGAGACTACTTGGGATCGGCCTAGCAAATAAAGATTGAAC TAGTTGAAGATGGTCCAGTTTTGCTCTGTAGATATCCTCATACATCTATACGTTGCCTGT CTGGTTATGAGGCTGTATTGTTTCTTTTATTTTCCACTGGGAGATCGTAGCAGGAAGGAT ACTTCATTTTGGTATATAGAGGCATCCCTTGTAAGAGTGGCAACTTGAGATCGAATTACT GAAGCAAAAAATACTAGTTAGTTGCTGACCAAGGAAAAATGTGCCTTGTTAAGTGGTGGG AGTCTTTACCTCGATCTGATACCATTTGCTTTCAAAACAATGTCAATTATATTCGATTTT AGGTTGTGCTAAATTCTAGACTTCTCCAATTATTTAACATTAGAAAGA
Protein Sequence (722 aa)
>BART1_0-u51812.010 722 150831_barley_pseudomolecules MGRRKERRLAAKAASGRRVKLDLFLDPSPGEASTKEGVGEENREQQTGVPTSPSSSDKKE NPLALLGQYSDDEEEDEVATDQPNGETKGSSTDASAKVFNDHGDVTGDKGDADSELPASV SVQQEASQADDVKTITENVAEEFTVAPEPTLENECVTVMEAVPDSSGMQIVGDIGGNWKA IMHEQSNQCYYWNTVTGETSWEIPDGLASGVAGDGVTSASVPTHMGYSVEAQAHVLPHSN VEAYPSDVSVGNGTATYTAMGTYTHDAYAYTGAVASHESVDIDPLQLAKYGEDLLQRLKL LERPHVAIDSLELIKREIEIRVADCNALSSYGSSLLPLWLHAEVHLKQLELSVSKFEASY TTRHGYLETVDAGHKAPNEAKVMAPSEGEHLKVDVSTLGIGTGDENIKVEEPCTTSSAQN SQCVAAAILRVESDSDEDMDVDMEVDEEGVEEHGGFTSMPNKEHPSSEQVRSPALSSLED SAPPQQDNDIPPPPPPPEEEWIPPPPPENEPAPPPPPEPEEPAVSFVHADTLPQPYGGQA NLGYMLPGMEYYPASGTDGTNASYYMQASDSHILQSQQHSYYAPLSASGVSIPVETTSIP PVPGSYYSYPSVTMAATEVAAESSGYYGSSTSAISSGELDNKTSSASLVSNSNVNPVESD KVISKEPTVVSLSQSVGAASASAPTVHGSSTLASTSTTNQTKGNLLFFARILNVTSSYSL RS