- Transcript BART1_0-u51812.009
- Transcript IDBART1_0-u51812.009
- Gene IDBART1_0-u51812
Barley RTD
Exon Structure of BART1_0-u51812.009
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 140679678 | 140679396 | + |
| chr7H | 2 | 140680803 | 140680127 | + |
| chr7H | 3 | 140681781 | 140681165 | + |
| chr7H | 4 | 140683083 | 140681885 | + |
| chr7H | 5 | 140684053 | 140683179 | + |
| chr7H | 6 | 140684216 | 140684143 | + |
| chr7H | 7 | 140684701 | 140684566 | + |
| chr7H | 8 | 140685517 | 140684971 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0 | 0 |
| morex | ETI | 0.00000000924129 | 0.000000000527679 | 0.000000000494952 |
| morex | LEA | 0 | 0 | 0 |
| morex | EPI | 0 | 0 | 0 |
| morex | ROO | 0 | 0.126462 | 0.000000000392693 |
| morex | ROO2 | 0 | 0.00000000370129 | 0 |
| morex | NOD | 0.190705 | 0.00000000568615 | 0 |
| morex | RAC | 0 | 0 | 0 |
| morex | INF1 | 1.42958 | 0.220529 | 0 |
| morex | INF2 | 4.10194 | 0.139479 | 3.05628 |
| morex | CAR5 | 5.41636 | 7.9908 | 1.84258 |
| morex | CAR15 | 0.944644 | 1.91758 | 4.97851 |
| morex | LEM | 0 | 0 | 0 |
| morex | LOD | 0 | 0 | 0 |
| morex | PAL | 0 | 0 | 0 |
| morex | SEN | 0 | 0 | 0.000438637 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os06g19470.2 | +1 | 0.0 | 590 | 414/674 (61%) | protein|WW domain containing protein, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g43210.1.p | +1 | 0.0 | 702 | 480/676 (71%) | pacid=32799652 transcript=Bradi1g43210.1 locus=Bradi1g43210 ID=Bradi1g43210.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (4408 bp)
>BART1_0-u51812.009 4408 150831_barley_pseudomolecules CTCAACCGAAGCGCCCACCCCGGACACCCGCCTACCGCCAGCTCCCTCCACTTCGCCTCT CCTCCTGATTCGCACCGCTTCCCTTTTTGCCGTAAAACAAAACACCCCGACGTCACCCTC CAAACCCTAACCCTAGAATCTAGAAGACGTCCATCTCCACCCCCGGCGCGCGCCCGACTA CTCGGGGCAGCGGCGATGGGGAGGCGGAAGGAGCGCCGCCTGGCGGCCAAGGCGGCCTCG GGCCGTAGGGTCAAGCTCGACCTCTTCCTCGATCCTTCCCCCGGGGAGGCATCTACTAAA GAGGGAGTAGGGGAGGAAAACCGCGAGCAGCAAACTGGTGTTCCCACTTCACCATCTTCG TCAGGTGGGTTCAATCAATTTCCTTCCAAGGGATATGTAAAGACGGCACATGCCTATGGA ATGTAAATTTGGTGGAAATTTGGAATTTTGTTCAAGCATGTGTATGCTCCAAATTTCTGG TTTGAGGCACATGTAGGGTTCCCGGCCTGCAAGGAACACTGAGTAAATTCTTCAGATCAG GCTGCCACTGTCAAAACTGGGTGTGTTCCTACCGGTAATTTCTCTTTTGGCAGCATCTGA GCGTGGGGATTTCAGGATGATTGTTGCCTCGGTTCGTATGTCTCTTTCTTTATATTGTAG CTCCTAACCTGGTTTTTTTAATTATTGCTGGGCTGCCATGGCACATTCTAAAGTAATTTT AACAAACTTGTTCTACTTTTATACCTGAGTCGATCTTCACATATACTTCAGAAAATAGTG CAATATATATTGTCACATGAAAGCTTTCACGTTTCTAATGATGAATCTGTTTTTTCAGAT AAGAAGGAAAATCCTCTAGCGTTGCTTGGGCAATATAGTGATGATGAAGAAGAGGATGAA GTAGCAACAGATCAACCCAATGGTGAAACTAAGGGAAGTTCAACTGATGCAAGTGCCAAG GTTTTTAACGATCATGGTGATGTAACTGGGGATAAAGGCGATGCAGATAGTGAACTGCCT GCTTCTGTTAGTGTTCAGCAGGAAGCATCTCAAGCCGATGATGTAAAAACTATCACAGAA AATGTTGCTGAGGAATTTACTGTTGCCCCTGAGCCAACTCTGGAAAATGAGTGTGTGACA GTAATGGAAGCTGTCCCAGATTCATCTGGCATGCAAATCGTGGGTGACATTGGTGGGAAT TGGAAGGCTATAATGCATGAACAAAGTAATCAGTGTTACTACTGGAACACAGTTACAGGA GAAACTTCTTGGGAGATTCCTGATGGATTAGCTTCGGGGGTTGCTGGTGATGGAGTCACT TCTGCATCTGTGCCTACTCATATGGGCTACTCTGTAGAAGCTCAAGCACATGTCCTTCCC CACAGCAATGTTGAAGCATATCCTAGTGATGTATCTGTTGGGAATGGCACAGCAACCTAT ACTGCTATGGGAACTTATACTCATGATGCTTATGCTTACACTGGAGCCGTCGCTAGTCAT GAGTCAGTGGACATTGACCCCTTGCAGCTTGCAAAATATGGTGAGGATTTACTGCAAAGA TTGAAGCTGCTGGAAAGGCCACATGTTGCCATTGACAGTCTTGAGTTGATAAAAAGAGAA ATTGAGATACGAGTAGCAGACTGTAATGCACTCTCCTCGTATGGATCTTCTTTACTTCCA TTGTGGTTGCATGCTGAGGTGCACCTTAAGCAACTAGAACTTTCAGTTTCCAAGTTTGAA GCTAGCTACACTACCAGACATGGATATCTGGAGACGGTGGATGCAGGACACAAAGCACCT AATGAAGCTAAAGTTATGGCACCCTCCGAGGGTGAGCATTTGAAAGTTGATGTTAGCACT CTGGGAATTGGTACTGGCGATGAAAATATTAAGGTTGAGGAACCATGTACAACATCATCT GCTCAGAACTCACAATGTGTGGCAGCAGCTATTTTAAGAGTTGAATCAGACAGTGATGAA GATATGGACGTGGACATGGAGGTCGATGAAGAAGGTGTTGAAGAGCACGGCGGATTCACT TCTATGCCAAATAAGGAGCATCCTTCATCAGAGCAAGTACGATCACCAGCTTTGTCATCA TTGGAAGACTCTGCTCCTCCCCAACAGGATAATGACATTCCTCCTCCACCACCACCACCA GAAGAGGAATGGATTCCACCTCCACCACCGGAGAATGAACCAGCTCCTCCACCTCCTCCT GAGCCTGAAGAGCCTGCTGTGTCATTTGTTCATGCTGATACACTTCCTCAGCCATACGGA GGTCAAGCAAACTTGGGTTATATGCTTCCAGGAATGGAGTACTATCCCGCTTCTGGTACA GATGGCACAAATGCCAGCTACTATATGCAAGCGAGCGATTCTCATATTCTTCAATCGCAG CAGCATTCTTACTACGCACCGTTGTCTGCAAGTGGCGTATCTATTCCTGTTGAGACCACA TCGATCCCCCCAGTACCAGGTTCTTATTATAGCTATCCTTCTGTCACTATGGCTGCCACT GAAGTAGCGGCTGAATCTTCTGGATACTATGGTTCATCAACCTCTGCCATTTCTAGCGGT GAATTAGATAACAAAACAAGCTCAGCCTCCCTTGTTTCAAATAGTAATGTGAATCCTGTG GAGTCTGATAAAGTGATATCCAAGGAGCCTACAGTTGTTTCTTTGAGCCAATCAGTAGGG GCAGCCTCAGCTTCAGCACCAACAGTACATGGTAGTTCTACTCTAGCTTCTACTAGTACC ACTAATCAGACTAAAGGTAATTTATTATTCTTTGCAAGGATACTTAATGTTACTAGCTCG TACTCCCTCCGTTCCTAAATATAAGTCCTTTTAGAGGTTCTACTAGGGGATTACATACGA ATGTATATAGACATACTTTAGAGTGTAGATTCTTTCATTTTGCTCCGTATGTAGTCCTCT AATGAAATCTTTAAAAAGACTTATATTTAGGAACGGAGGGAGTAGTTGTTTTAGTTTTGA CATTTGCACTGATTTGCAGTTCCTCGTACTAAGAAGCGACCTGTTGCTGTTGCATCATCA CTGAGATCTAATAAGAAGGTCTCAAGTCTGGTGGATAAGGTATCTCCCTGACCTCCCAAA GCTGCTGTTAAAATAGTGACCATCTCTGCTCTCTCCTACCCTACCATCAACTGCTCCCAA GTGTGGTGCTTGACATCAATGAAGAAATTTAACTCACTGCATGATATGCATTATTGCTAA TGGTGTATACTTAGTCGTTGAGACATACTCTTGGTTATGTTATTAGCAAGAGAGCACACT GTCCTCGGCCAGTTTATTTCGTGGTGCACAACATTGGTCCTCCAGAAAAAAAACTCATGC AAGTGGGAGTATGGCCGTGTTTCCTGACTATTTCGTCTCATGTTTATCATTTCTTATTTT AAAGGCAGAGCAATCTGTTTACATGGTAATTGGTAAGGCTTAAGACAAGGTGAGTGTTGA TGTATAATGATTGTTTCCTTATTAATCTACCTTTACTAAAGCGACCTTTTATTTTATTTT ATTTCACTATTACAGTGGAAAGCTGCAAAAGAGGAGCTTTGTGATGAAGAGGAAGAGGAG CCTGAAGATGCTTTGGAGTACCTAGAAAGGAAACGTCGGAAGGAAATAGATGGGTGGCGT AAGCAACAAATAGCTAGTGGAGAAGCTAAGGAAAATGCTAATTTTGTTCCCCTTGGCGGT AACTGGCGTGACCGTGTAAAACGCAAAAGAGCTGAAGCAAAGAAGGAAGCAAAGACTGAA TCTGTTTGTGCAGCTGCCGAACAACACAAAGGAGAGCCTGATCTCTCAGAGCTTTCCAAG GGTCTCCCTTCTGGGTGGCAGGCATACATAGACGAGTCTACGAAGCAAGTGTACTATGGG AACAACCTCACTTCCGAGACTACTTGGGATCGGCCTAGCAAATAAAGATTGAACTAGTTG AAGATGGTCCAGTTTTGCTCTGTAGATATCCTCATACATCTATACGTTGCCTGTCTGGTT ATGAGGCTGTATTGTTTCTTTTATTTTCCACTGGGAGATCGTAGCAGGAAGGATACTTCA TTTTGGTATATAGAGGCATCCCTTGTAAGAGTGGCAACTTGAGATCGAATTACTGAAGCA AAAAATACTAGTTAGTTGCTGACCAAGGAAAAATGTGCCTTGTTAAGTGGTGGGAGTCTT TACCTCGATCTGATACCATTTGCTTTCAAAACAATGTCAATTATATTCGATTTTAGGTTG TGCTAAATTCTAGACTTCTCCAATTATTTAACATTAGAAAGAAAGATGATTTTTAAGTTT TTTTTCACACTTATTTTTTTTTTAAACTTCAAAATGCCCTCGGACATCATTGGCTGGATT TTGTTTACATCATGCGATCTAAGTTTCG
Protein Sequence (564 aa)
>BART1_0-u51812.009 564 150831_barley_pseudomolecules MEAVPDSSGMQIVGDIGGNWKAIMHEQSNQCYYWNTVTGETSWEIPDGLASGVAGDGVTS ASVPTHMGYSVEAQAHVLPHSNVEAYPSDVSVGNGTATYTAMGTYTHDAYAYTGAVASHE SVDIDPLQLAKYGEDLLQRLKLLERPHVAIDSLELIKREIEIRVADCNALSSYGSSLLPL WLHAEVHLKQLELSVSKFEASYTTRHGYLETVDAGHKAPNEAKVMAPSEGEHLKVDVSTL GIGTGDENIKVEEPCTTSSAQNSQCVAAAILRVESDSDEDMDVDMEVDEEGVEEHGGFTS MPNKEHPSSEQVRSPALSSLEDSAPPQQDNDIPPPPPPPEEEWIPPPPPENEPAPPPPPE PEEPAVSFVHADTLPQPYGGQANLGYMLPGMEYYPASGTDGTNASYYMQASDSHILQSQQ HSYYAPLSASGVSIPVETTSIPPVPGSYYSYPSVTMAATEVAAESSGYYGSSTSAISSGE LDNKTSSASLVSNSNVNPVESDKVISKEPTVVSLSQSVGAASASAPTVHGSSTLASTSTT NQTKGNLLFFARILNVTSSYSLRS