- Transcript BART1_0-u51812.007
- Transcript IDBART1_0-u51812.007
- Gene IDBART1_0-u51812
Barley RTD
Exon Structure of BART1_0-u51812.007
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 140679678 | 140679395 | + |
| chr7H | 2 | 140680207 | 140680127 | + |
| chr7H | 3 | 140680803 | 140680682 | + |
| chr7H | 4 | 140681781 | 140681165 | + |
| chr7H | 5 | 140683178 | 140681885 | + |
| chr7H | 6 | 140683871 | 140683422 | + |
| chr7H | 7 | 140684053 | 140683958 | + |
| chr7H | 8 | 140684216 | 140684143 | + |
| chr7H | 9 | 140684701 | 140684566 | + |
| chr7H | 10 | 140685517 | 140684971 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.000704013 | 0.0000000245393 | 0.0000000572881 |
| morex | ETI | 0 | 0 | 0.0000000235977 |
| morex | LEA | 0.0000000533051 | 0 | 0.0000000368145 |
| morex | EPI | 0.0000000312203 | 0 | 0.00000000651841 |
| morex | ROO | 0 | 0.000000982066 | 0 |
| morex | ROO2 | 0.00000148862 | 0.000000110683 | 0.00000193176 |
| morex | NOD | 0 | 0.0000000139741 | 0.00000315117 |
| morex | RAC | 0.00000078911 | 0.00000000159202 | 0.0000000547514 |
| morex | INF1 | 0.00000000188334 | 0.0000000131389 | 0 |
| morex | INF2 | 0 | 0.000000000657606 | 0 |
| morex | CAR5 | 0.00000145779 | 0.00000129097 | 0.000000257436 |
| morex | CAR15 | 0.0000000024099 | 0 | 0 |
| morex | LEM | 0.00000000187604 | 0.00000258563 | 0.000000000365704 |
| morex | LOD | 0.0000000732367 | 0.0000000920865 | 0.000000000612867 |
| morex | PAL | 0.0000000272602 | 0.0000119848 | 0 |
| morex | SEN | 0.0000000012476 | 0 | 0.0000000106705 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os06g19470.2 | +2 | 0.0 | 641 | 439/691 (64%) | protein|WW domain containing protein, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g43210.1.p | +2 | 0.0 | 771 | 511/697 (73%) | pacid=32799652 transcript=Bradi1g43210.1 locus=Bradi1g43210 ID=Bradi1g43210.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3701 bp)
>BART1_0-u51812.007 3701 150831_barley_pseudomolecules GCTCAACCGAAGCGCCCACCCCGGACACCCGCCTACCGCCAGCTCCCTCCACTTCGCCTC TCCTCCTGATTCGCACCGCTTCCCTTTTTGCCGTAAAACAAAACACCCCGACGTCACCCT CCAAACCCTAACCCTAGAATCTAGAAGACGTCCATCTCCACCCCCGGCGCGCGCCCGACT ACTCGGGGCAGCGGCGATGGGGAGGCGGAAGGAGCGCCGCCTGGCGGCCAAGGCGGCCTC GGGCCGTAGGGTCAAGCTCGACCTCTTCCTCGATCCTTCCCCCGGGGAGGCATCTACTAA AGAGGGAGTAGGGGAGGAAAACCGCGAGCAGCAAACTGGTGTTCCCACTTCACCATCTTC GTCAGATAAGAAGGAAAATCCTCTAGCGTTGCTTGGGCAATATAGTGATGATGAAGAAGA GGATGAAGTAGCAACAGATCAACCCAATGGTGAAACTAAGGGAAGTTCAACTGATGCAAG TGCCAAGGTTTTTAACGATCATGGTGATGTAACTGGGGATAAAGGCGATGCAGATAGTGA ACTGCCTGCTTCTGTTAGTGTTCAGCAGGAAGCATCTCAAGCCGATGATGTAAAAACTAT CACAGAAAATGTTGCTGAGGAATTTACTGTTGCCCCTGAGCCAACTCTGGAAAATGAGTG TGTGACAGTAATGGAAGCTGTCCCAGATTCATCTGGCATGCAAATCGTGGGTGACATTGG TGGGAATTGGAAGGCTATAATGCATGAACAAAGTAATCAGTGTTACTACTGGAACACAGT TACAGGAGAAACTTCTTGGGAGATTCCTGATGGATTAGCTTCGGGGGTTGCTGGTGATGG AGTCACTTCTGCATCTGTGCCTACTCATATGGGCTACTCTGTAGAAGCTCAAGCACATGT CCTTCCCCACAGCAATGTTGAAGCATATCCTAGTGATGTATCTGTTGGGAATGGCACAGC AACCTATACTGCTATGGGAACTTATACTCATGATGCTTATGCTTACACTGGAGCCGTCGC TAGTCATGAGTCAGTGGACATTGACCCCTTGCAGCTTGCAAAATATGGTGAGGATTTACT GCAAAGATTGAAGCTGCTGGAAAGGCCACATGTTGCCATTGACAGTCTTGAGTTGATAAA AAGAGAAATTGAGATACGAGTAGCAGACTGTAATGCACTCTCCTCGTATGGATCTTCTTT ACTTCCATTGTGGTTGCATGCTGAGGTGCACCTTAAGCAACTAGAACTTTCAGTTTCCAA GTTTGAAGCTAGCTACACTACCAGACATGGATATCTGGAGACGGTGGATGCAGGACACAA AGCACCTAATGAAGCTAAAGTTATGGCACCCTCCGAGGGTGAGCATTTGAAAGTTGATGT TAGCACTCTGGGAATTGGTACTGGCGATGAAAATATTAAGGTTGAGGAACCATGTACAAC ATCATCTGCTCAGAACTCACAATGTGTGGCAGCAGCTATTTTAAGAGTTGAATCAGACAG TGATGAAGATATGGACGTGGACATGGAGGTCGATGAAGAAGGTGTTGAAGAGCACGGCGG ATTCACTTCTATGCCAAATAAGGAGCATCCTTCATCAGAGCAAGTACGATCACCAGCTTT GTCATCATTGGAAGACTCTGCTCCTCCCCAACAGGATAATGACATTCCTCCTCCACCACC ACCACCAGAAGAGGAATGGATTCCACCTCCACCACCGGAGAATGAACCAGCTCCTCCACC TCCTCCTGAGCCTGAAGAGCCTGCTGTGTCATTTGTTCATGCTGATACACTTCCTCAGCC ATACGGAGGTCAAGCAAACTTGGGTTATATGCTTCCAGGAATGGAGTACTATCCCGCTTC TGGTACAGATGGCACAAATGCCAGCTACTATATGCAAGCGAGCGATTCTCATATTCTTCA ATCGCAGCAGCATTCTTACTACGCACCGTTGTCTGCAAGTGGCGTATCTATTCCTGTTGA GACCACATCGATCCCCCCAGTACCAGGTTCTTATTATAGCTATCCTTCTGTCACTATGGC TGCCACTGAAGTAGCGGCTGAATCTTCTGGATACTATGGTTCATCAACCTCTGCCATTTC TAGCGGTGAATTAGATAACAAAACAAGCTCAGCCTCCCTTGTTTCAAATAGTAATGTGAA TCCTGTGGAGTCTGATAAAGTGATATCCAAGGAGCCTACAGTTGTTTCTTTGAGCCAATC AGTAGGGGCAGCCTCAGCTTCAGCACCAACAGTACATGGTAGTTCTACTCTAGCTTCTAC TAGTACCACTAATCAGACTAAAGGTAATTTATTATTCTTTGCAAGGATACTTAATGTTAC TAGCTCGTACATGGTAGTTCTACTCTAGCTTCTACTAGTACCACTAATCAGACTAAAGTT CCTCGTACTAAGAAGCGACCTGTTGCTGTTGCATCATCACTGAGATCTAATAAGAAGGTC TCAAGTCTGGTGGATAAGGTATCTCCCTGACCTCCCAAAGCTGCTGTTAAAATAGTGACC ATCTCTGCTCTCTCCTACCCTACCATCAACTGCTCCCAAGTGTGGTGCTTGACATCAATG AAGAAATTTAACTCACTGCATGATATGCATTATTGCTAATGGTGTATACTTAGTCGTTGA GACATACTCTTGGTTATGTTATTAGCAAGAGAGCACACTGTCCTCGGCCAGTTTATTTCG TGGTGCACAACATTGGTCCTCCAGAAAAAAAACTCATGCAAGTGGGAGTATGGCCGTGTT TCCTGACTATTTCGTCTCATGTTTATCATTTCTTATTTTAAAGGCAGAGCAATCTGTTTA CATGGTAATTGGTAAGGCTTAAGACAAGTGGAAAGCTGCAAAAGAGGAGCTTTGTGATGA AGAGGAAGAGGAGCCTGAAGATGCTTTGGAGTACCTAGAAAGGAAACGTCGGAAGGAAAT AGATGGGTGGCGTAAGCAACAAATAGCTAGTGGAGAAGCTAAGGAAAATGCTAATTTTGT TCCCCTTGGCGGTAACTGGCGTGACCGTGTAAAACGCAAAAGAGCTGAAGCAAAGAAGGA AGCAAAGACTGAATCTGTTTGTGCAGCTGCCGAACAACACAAAGGAGAGCCTGATCTCTC AGAGCTTTCCAAGGGTCTCCCTTCTGGGTGGCAGGCATACATAGACGAGTCTACGAAGCA AGTGTACTATGGGAACAACCTCACTTCCGAGACTACTTGGGATCGGCCTAGCAAATAAAG ATTGAACTAGTTGAAGATGGTCCAGTTTTGCTCTGTAGATATCCTCATACATCTATACGT TGCCTGTCTGGTTATGAGGCTGTATTGTTTCTTTTATTTTCCACTGGGAGATCGTAGCAG GAAGGATACTTCATTTTGGTATATAGAGGCATCCCTTGTAAGAGTGGCAACTTGAGATCG AATTACTGAAGCAAAAAATACTAGTTAGTTGCTGACCAAGGAAAAATGTGCCTTGTTAAG TGGTGGGAGTCTTTACCTCGATCTGATACCATTTGCTTTCAAAACAATGTCAATTATATT CGATTTTAGGTTGTGCTAAATTCTAGACTTCTCCAATTATTTAACATTAGAAAGAAAGAT GATTTTTAAGTTTTTTTTCACACTTATTTTTTTTTTAAACTTCAAAATGCCCTCGGACAT CATTGGCTGGATTTTGTTTACATCATGCGATCTAAGTTTCG
Protein Sequence (723 aa)
>BART1_0-u51812.007 723 150831_barley_pseudomolecules MGRRKERRLAAKAASGRRVKLDLFLDPSPGEASTKEGVGEENREQQTGVPTSPSSSDKKE NPLALLGQYSDDEEEDEVATDQPNGETKGSSTDASAKVFNDHGDVTGDKGDADSELPASV SVQQEASQADDVKTITENVAEEFTVAPEPTLENECVTVMEAVPDSSGMQIVGDIGGNWKA IMHEQSNQCYYWNTVTGETSWEIPDGLASGVAGDGVTSASVPTHMGYSVEAQAHVLPHSN VEAYPSDVSVGNGTATYTAMGTYTHDAYAYTGAVASHESVDIDPLQLAKYGEDLLQRLKL LERPHVAIDSLELIKREIEIRVADCNALSSYGSSLLPLWLHAEVHLKQLELSVSKFEASY TTRHGYLETVDAGHKAPNEAKVMAPSEGEHLKVDVSTLGIGTGDENIKVEEPCTTSSAQN SQCVAAAILRVESDSDEDMDVDMEVDEEGVEEHGGFTSMPNKEHPSSEQVRSPALSSLED SAPPQQDNDIPPPPPPPEEEWIPPPPPENEPAPPPPPEPEEPAVSFVHADTLPQPYGGQA NLGYMLPGMEYYPASGTDGTNASYYMQASDSHILQSQQHSYYAPLSASGVSIPVETTSIP PVPGSYYSYPSVTMAATEVAAESSGYYGSSTSAISSGELDNKTSSASLVSNSNVNPVESD KVISKEPTVVSLSQSVGAASASAPTVHGSSTLASTSTTNQTKGNLLFFARILNVTSSYMV VLL