- Transcript BART1_0-u51812.002
- Transcript IDBART1_0-u51812.002
- Gene IDBART1_0-u51812
Barley RTD
Exon Structure of BART1_0-u51812.002
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 140679678 | 140679390 | + |
| chr7H | 2 | 140680207 | 140680127 | + |
| chr7H | 3 | 140680803 | 140680682 | + |
| chr7H | 4 | 140681781 | 140681165 | + |
| chr7H | 5 | 140683083 | 140681885 | + |
| chr7H | 6 | 140684053 | 140683422 | + |
| chr7H | 7 | 140684216 | 140684143 | + |
| chr7H | 8 | 140684701 | 140684566 | + |
| chr7H | 9 | 140685517 | 140684971 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 3.08649 | 0.75386 | 2.39768 |
| morex | ETI | 12.8054 | 11.7891 | 7.81855 |
| morex | LEA | 1.53938 | 4.52146 | 0.0116593 |
| morex | EPI | 12.1087 | 12.9399 | 17.0394 |
| morex | ROO | 0 | 2.42434 | 0.785715 |
| morex | ROO2 | 4.04103 | 4.39948 | 7.27256 |
| morex | NOD | 7.63379 | 8.96351 | 10.2453 |
| morex | RAC | 5.18581 | 5.98188 | 7.28572 |
| morex | INF1 | 15.2964 | 12.0217 | 4.1579 |
| morex | INF2 | 6.6505 | 17.508 | 22.6911 |
| morex | CAR5 | 1.87527 | 1.00679 | 0.581747 |
| morex | CAR15 | 2.87797 | 3.29532 | 8.87743 |
| morex | LEM | 9.22342 | 9.45665 | 8.95676 |
| morex | LOD | 3.76778 | 0.583597 | 5.0828 |
| morex | PAL | 4.71335 | 6.5585 | 6.0977 |
| morex | SEN | 7.93409 | 3.13062 | 6.16103 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os06g19470.2 | +1 | 0.0 | 682 | 462/720 (64%) | protein|WW domain containing protein, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g43210.1.p | +1 | 0.0 | 820 | 537/724 (74%) | pacid=32799652 transcript=Bradi1g43210.1 locus=Bradi1g43210 ID=Bradi1g43210.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3697 bp)
>BART1_0-u51812.002 3697 150831_barley_pseudomolecules GCACAGCTCAACCGAAGCGCCCACCCCGGACACCCGCCTACCGCCAGCTCCCTCCACTTC GCCTCTCCTCCTGATTCGCACCGCTTCCCTTTTTGCCGTAAAACAAAACACCCCGACGTC ACCCTCCAAACCCTAACCCTAGAATCTAGAAGACGTCCATCTCCACCCCCGGCGCGCGCC CGACTACTCGGGGCAGCGGCGATGGGGAGGCGGAAGGAGCGCCGCCTGGCGGCCAAGGCG GCCTCGGGCCGTAGGGTCAAGCTCGACCTCTTCCTCGATCCTTCCCCCGGGGAGGCATCT ACTAAAGAGGGAGTAGGGGAGGAAAACCGCGAGCAGCAAACTGGTGTTCCCACTTCACCA TCTTCGTCAGATAAGAAGGAAAATCCTCTAGCGTTGCTTGGGCAATATAGTGATGATGAA GAAGAGGATGAAGTAGCAACAGATCAACCCAATGGTGAAACTAAGGGAAGTTCAACTGAT GCAAGTGCCAAGGTTTTTAACGATCATGGTGATGTAACTGGGGATAAAGGCGATGCAGAT AGTGAACTGCCTGCTTCTGTTAGTGTTCAGCAGGAAGCATCTCAAGCCGATGATGTAAAA ACTATCACAGAAAATGTTGCTGAGGAATTTACTGTTGCCCCTGAGCCAACTCTGGAAAAT GAGTGTGTGACAGTAATGGAAGCTGTCCCAGATTCATCTGGCATGCAAATCGTGGGTGAC ATTGGTGGGAATTGGAAGGCTATAATGCATGAACAAAGTAATCAGTGTTACTACTGGAAC ACAGTTACAGGAGAAACTTCTTGGGAGATTCCTGATGGATTAGCTTCGGGGGTTGCTGGT GATGGAGTCACTTCTGCATCTGTGCCTACTCATATGGGCTACTCTGTAGAAGCTCAAGCA CATGTCCTTCCCCACAGCAATGTTGAAGCATATCCTAGTGATGTATCTGTTGGGAATGGC ACAGCAACCTATACTGCTATGGGAACTTATACTCATGATGCTTATGCTTACACTGGAGCC GTCGCTAGTCATGAGTCAGTGGACATTGACCCCTTGCAGCTTGCAAAATATGGTGAGGAT TTACTGCAAAGATTGAAGCTGCTGGAAAGGCCACATGTTGCCATTGACAGTCTTGAGTTG ATAAAAAGAGAAATTGAGATACGAGTAGCAGACTGTAATGCACTCTCCTCGTATGGATCT TCTTTACTTCCATTGTGGTTGCATGCTGAGGTGCACCTTAAGCAACTAGAACTTTCAGTT TCCAAGTTTGAAGCTAGCTACACTACCAGACATGGATATCTGGAGACGGTGGATGCAGGA CACAAAGCACCTAATGAAGCTAAAGTTATGGCACCCTCCGAGGGTGAGCATTTGAAAGTT GATGTTAGCACTCTGGGAATTGGTACTGGCGATGAAAATATTAAGGTTGAGGAACCATGT ACAACATCATCTGCTCAGAACTCACAATGTGTGGCAGCAGCTATTTTAAGAGTTGAATCA GACAGTGATGAAGATATGGACGTGGACATGGAGGTCGATGAAGAAGGTGTTGAAGAGCAC GGCGGATTCACTTCTATGCCAAATAAGGAGCATCCTTCATCAGAGCAAGTACGATCACCA GCTTTGTCATCATTGGAAGACTCTGCTCCTCCCCAACAGGATAATGACATTCCTCCTCCA CCACCACCACCAGAAGAGGAATGGATTCCACCTCCACCACCGGAGAATGAACCAGCTCCT CCACCTCCTCCTGAGCCTGAAGAGCCTGCTGTGTCATTTGTTCATGCTGATACACTTCCT CAGCCATACGGAGGTCAAGCAAACTTGGGTTATATGCTTCCAGGAATGGAGTACTATCCC GCTTCTGGTACAGATGGCACAAATGCCAGCTACTATATGCAAGCGAGCGATTCTCATATT CTTCAATCGCAGCAGCATTCTTACTACGCACCGTTGTCTGCAAGTGGCGTATCTATTCCT GTTGAGACCACATCGATCCCCCCAGTACCAGGTTCTTATTATAGCTATCCTTCTGTCACT ATGGCTGCCACTGAAGTAGCGGCTGAATCTTCTGGATACTATGGTTCATCAACCTCTGCC ATTTCTAGCGGTGAATTAGATAACAAAACAAGCTCAGCCTCCCTTGTTTCAAATAGTAAT GTGAATCCTGTGGAGTCTGATAAAGTGATATCCAAGGAGCCTACAGTTGTTTCTTTGAGC CAATCAGTAGGGGCAGCCTCAGCTTCAGCACCAACAGTACATGGTAGTTCTACTCTAGCT TCTACTAGTACCACTAATCAGACTAAAGTTCCTCGTACTAAGAAGCGACCTGTTGCTGTT GCATCATCACTGAGATCTAATAAGAAGGTCTCAAGTCTGGTGGATAAGGTATCTCCCTGA CCTCCCAAAGCTGCTGTTAAAATAGTGACCATCTCTGCTCTCTCCTACCCTACCATCAAC TGCTCCCAAGTGTGGTGCTTGACATCAATGAAGAAATTTAACTCACTGCATGATATGCAT TATTGCTAATGGTGTATACTTAGTCGTTGAGACATACTCTTGGTTATGTTATTAGCAAGA GAGCACACTGTCCTCGGCCAGTTTATTTCGTGGTGCACAACATTGGTCCTCCAGAAAAAA AACTCATGCAAGTGGGAGTATGGCCGTGTTTCCTGACTATTTCGTCTCATGTTTATCATT TCTTATTTTAAAGGCAGAGCAATCTGTTTACATGGTAATTGGTAAGGCTTAAGACAAGGT GAGTGTTGATGTATAATGATTGTTTCCTTATTAATCTACCTTTACTAAAGCGACCTTTTA TTTTATTTTATTTCACTATTACAGTGGAAAGCTGCAAAAGAGGAGCTTTGTGATGAAGAG GAAGAGGAGCCTGAAGATGCTTTGGAGTACCTAGAAAGGAAACGTCGGAAGGAAATAGAT GGGTGGCGTAAGCAACAAATAGCTAGTGGAGAAGCTAAGGAAAATGCTAATTTTGTTCCC CTTGGCGGTAACTGGCGTGACCGTGTAAAACGCAAAAGAGCTGAAGCAAAGAAGGAAGCA AAGACTGAATCTGTTTGTGCAGCTGCCGAACAACACAAAGGAGAGCCTGATCTCTCAGAG CTTTCCAAGGGTCTCCCTTCTGGGTGGCAGGCATACATAGACGAGTCTACGAAGCAAGTG TACTATGGGAACAACCTCACTTCCGAGACTACTTGGGATCGGCCTAGCAAATAAAGATTG AACTAGTTGAAGATGGTCCAGTTTTGCTCTGTAGATATCCTCATACATCTATACGTTGCC TGTCTGGTTATGAGGCTGTATTGTTTCTTTTATTTTCCACTGGGAGATCGTAGCAGGAAG GATACTTCATTTTGGTATATAGAGGCATCCCTTGTAAGAGTGGCAACTTGAGATCGAATT ACTGAAGCAAAAAATACTAGTTAGTTGCTGACCAAGGAAAAATGTGCCTTGTTAAGTGGT GGGAGTCTTTACCTCGATCTGATACCATTTGCTTTCAAAACAATGTCAATTATATTCGAT TTTAGGTTGTGCTAAATTCTAGACTTCTCCAATTATTTAACATTAGAAAGAAAGATGATT TTTAAGTTTTTTTTCACACTTATTTTTTTTTTAAACTTCAAAATGCCCTCGGACATCATT GGCTGGATTTTGTTTACATCATGCGATCTAAGTTTCG
Protein Sequence (732 aa)
>BART1_0-u51812.002 732 150831_barley_pseudomolecules MGRRKERRLAAKAASGRRVKLDLFLDPSPGEASTKEGVGEENREQQTGVPTSPSSSDKKE NPLALLGQYSDDEEEDEVATDQPNGETKGSSTDASAKVFNDHGDVTGDKGDADSELPASV SVQQEASQADDVKTITENVAEEFTVAPEPTLENECVTVMEAVPDSSGMQIVGDIGGNWKA IMHEQSNQCYYWNTVTGETSWEIPDGLASGVAGDGVTSASVPTHMGYSVEAQAHVLPHSN VEAYPSDVSVGNGTATYTAMGTYTHDAYAYTGAVASHESVDIDPLQLAKYGEDLLQRLKL LERPHVAIDSLELIKREIEIRVADCNALSSYGSSLLPLWLHAEVHLKQLELSVSKFEASY TTRHGYLETVDAGHKAPNEAKVMAPSEGEHLKVDVSTLGIGTGDENIKVEEPCTTSSAQN SQCVAAAILRVESDSDEDMDVDMEVDEEGVEEHGGFTSMPNKEHPSSEQVRSPALSSLED SAPPQQDNDIPPPPPPPEEEWIPPPPPENEPAPPPPPEPEEPAVSFVHADTLPQPYGGQA NLGYMLPGMEYYPASGTDGTNASYYMQASDSHILQSQQHSYYAPLSASGVSIPVETTSIP PVPGSYYSYPSVTMAATEVAAESSGYYGSSTSAISSGELDNKTSSASLVSNSNVNPVESD KVISKEPTVVSLSQSVGAASASAPTVHGSSTLASTSTTNQTKVPRTKKRPVAVASSLRSN KKVSSLVDKVSP