- Transcript BART1_0-u51505.009
- Transcript IDBART1_0-u51505.009
- Gene IDBART1_0-u51505
Barley RTD
Exon Structure of BART1_0-u51505.009
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 112660066 | 112659913 | + |
| chr7H | 2 | 112660224 | 112660166 | + |
| chr7H | 3 | 112660580 | 112660502 | + |
| chr7H | 4 | 112661070 | 112660923 | + |
| chr7H | 5 | 112661592 | 112661380 | + |
| chr7H | 6 | 112662272 | 112662138 | + |
| chr7H | 7 | 112662527 | 112662396 | + |
| chr7H | 8 | 112662915 | 112662700 | + |
| chr7H | 9 | 112665926 | 112665323 | + |
| chr7H | 10 | 112666224 | 112666039 | + |
| chr7H | 11 | 112666467 | 112666319 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 3.07203 | 6.13421 | 4.80654 |
| morex | ETI | 0.95942 | 0.492804 | 0.581021 |
| morex | LEA | 2.42277 | 1.57299 | 3.6641 |
| morex | EPI | 0.604608 | 0.496537 | 0.571634 |
| morex | ROO | 3.00711 | 3.04167 | 1.42163 |
| morex | ROO2 | 2.24917 | 2.33449 | 2.94563 |
| morex | NOD | 0.862119 | 1.22673 | 1.4543 |
| morex | RAC | 2.77864 | 3.44574 | 3.22622 |
| morex | INF1 | 17.8085 | 17.9044 | 18.4219 |
| morex | INF2 | 21.5748 | 21.1839 | 26.2969 |
| morex | CAR5 | 8.12273 | 5.10717 | 6.06729 |
| morex | CAR15 | 3.74177 | 3.05322 | 2.96609 |
| morex | LEM | 0.926292 | 1.06388 | 1.20334 |
| morex | LOD | 3.19453 | 2.46639 | 1.26992 |
| morex | PAL | 1.15421 | 2.0543 | 2.29346 |
| morex | SEN | 1.57453 | 1.53582 | 1.33432 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os06g14040.1 | +3 | 0.0 | 607 | 338/376 (90%) | protein|ThiF family domain containing protein, putative, expressed |
| TAIR PP10 | AT5G37530 @ ARAPORT AT5G37530.2 @ TAIR |
+3 | 4e-167 | 487 | 271/339 (80%) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr5:14906505-14909020 FORWARD LENGTH=456 |
| BRACH PP3 | Bradi1g44307.6.p | +3 | 0.0 | 620 | 367/407 (90%) | pacid=32793958 transcript=Bradi1g44307.6 locus=Bradi1g44307 ID=Bradi1g44307.6.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2075 bp)
>BART1_0-u51505.009 2075 150831_barley_pseudomolecules TTCTGATCGGCCGAGCAGGGGTTAGGGTTCTAGGCGGCTGCGCCGGAGACATGGAGGAGA GGGCGAGGCAGCTGCTCCTCCTCGCCGCCGTCGCGGGCGCTGGCGCCGTAGTAGGCGGGC TCTCCGTTGCTTCCGTCTTCAGCTTCCTCTCCAGGGCGAAGCGGAGAGAGGGATACGTGC GCAAGCTGTTGGAATCCAATGGCGGTGCTGGTGGCAGTACTGGACCGGGAGCACGTCTGC ATGCTAGCTCGGATCTTCTCTCTGATGAAGTTGTCGCTGAGCAGCTTACAAGGAATATAC AATTTTTTGGAGTCCAATCTCAGAAGAAAGTTACTGAATCTTTTGTTGTAGTCATTGGTC TTGGAGGAGTTGGCAGTCATGCTGCTTCCATGCTCCTCAGATCTGGGGTTGGCAGGTTGC TCCTAGTAGATTTTGATCAGGTCTCACTCTCATCACTAAATCGGCATGCTGTGGCAACCA GAGAGGACGTGGGGACCCCAAAAGCATCATGCCTCAAGAAGCATTTCTCATTGATATATC CAGAGTGTCAAATAGAAGCAAGAGTGCAGTTGTATGATTCATCAGCTGAGGACGAAATTC TTTCTGGACAGCCAGATTTTGTTCTTGATTGCATAGATAACATTGATACTAAGGTGTCTC TCCTTGCGGCTTGCGTACGCAGAGGGTTAAGGGTACTTTCTGCAATGGGGGCTGGAGCTC GAGCTGACCCGACCCGAATCCGTGTTGCGGATTTGAGAGAATCAAGCAATGATCCCCTTT CTCGGGCGGTACGGCATCGGCTGAAGAAGGATCATGGAATTGAAGGTGGAATACCAGTAG TTTTTTCAATGGAGAAGCCCAAGGCAAAGCTACTTCCCTTTCAAGGTTCGAAAGAAGAGG AAACTCCATCAGATTACCAGATTGTGCCAGGATTCAGGGTTCGCATTATCCCAGTACTGG GAACTATCCCTGCAATATTTGGTCAAGTTATGGCCTCCTATGTGGTTACTCAGCTTGCCC AGTTTGATTTTCAAACTGAACCAATTGTTAACCTGGATTTGGATCATTACCGCGTTCTTC ACCATCGTCTTCTTGAGCACGAGGAGCTGATATATGGGTCAGCCGAGCAAGTTTTGGTTG ATGCTGAAGAGGTGATGTACATTGTGAAAGAATTGTGGCGTGGCCGCAGTGCTAGGGACC AAAACATGAAGGATACTGGCCGGAAAATGTGGAGATCTGTCAACGAACTGATGCTTGTTC GGTACGCTTCTCTGTTTAACTGATAGTGTGGTTTTACATGACAATTATCATTGTTTTCGT GGTAGTTATGTATTTATGTAGTGACATGGTACAGTAAAAACATAATTTGGTATGCTGTAA CAGGCATATTCCAGTTGCTAATGACTTAAGTGAGATGAACTGTAAGCTGATCCCGCGAAC TATTATGCTAAGTAGAGCTCATGACCTTGTAACTAGTAACTTCTAACATTAACTTAGTGT TATGCCAACTTCATTCTGTGTTAAGCTTCCATCATCTCAATATCAAGTTGCAATAGCAAT CTTACTGAATGGGAAATGGACTTATTATATACTTAGCCTTCCATTATTAACGTGTTAATA AAACTGCCGTTTTAAACAAATTACATGTTTTTTTTTGGCTTTGGTGCTTTATTTTGTTAT AGGTGGGACAAAACGAAGCCCGCTGGTGTGTCAAACTTAATACTTCTCAAGTTCAGTGAG GCGGATGCACATGAATCCACCACGCTTGATCAGCTAAAAGATGAAGAACCTGAATTCTAC GCCATGGTTTCACGTGTTCTGAAACGAGCCGAAACGGAGTTTGCTTTATGAGCTGGTCAC CGATGTTACTGGATTTCTACGATTGCTATACCGTCATAAGCCGTGCAATGCTACTGGACT AGTCAGAACTAGGACTTGTTGGTGATGCTTTGATTTCTCTGGAAGGATCCTCCTGTAATC GTCTCCCCGGGATTTTTTATGCGTTTGAGATTGTCTCATGTAAACCAAATCAGAGATTAT ATTGAGCATACGATATGCGGCATATTCAAATGAAT
Protein Sequence (410 aa)
>BART1_0-u51505.009 410 150831_barley_pseudomolecules MEERARQLLLLAAVAGAGAVVGGLSVASVFSFLSRAKRREGYVRKLLESNGGAGGSTGPG ARLHASSDLLSDEVVAEQLTRNIQFFGVQSQKKVTESFVVVIGLGGVGSHAASMLLRSGV GRLLLVDFDQVSLSSLNRHAVATREDVGTPKASCLKKHFSLIYPECQIEARVQLYDSSAE DEILSGQPDFVLDCIDNIDTKVSLLAACVRRGLRVLSAMGAGARADPTRIRVADLRESSN DPLSRAVRHRLKKDHGIEGGIPVVFSMEKPKAKLLPFQGSKEEETPSDYQIVPGFRVRII PVLGTIPAIFGQVMASYVVTQLAQFDFQTEPIVNLDLDHYRVLHHRLLEHEELIYGSAEQ VLVDAEEVMYIVKELWRGRSARDQNMKDTGRKMWRSVNELMLVRYASLFN