- Gene BART1_0-u51505
- Gene IDBART1_0-u51505
- Location chr7H: 112659169 - 112667077
Barley RTD
Matching HORVU genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).| HORVU ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
|---|---|---|---|---|---|---|
| HORVU7Hr1G041090 | 87.7 | + | + | 6933 | -976 | Containing |
Transcripts from Gene BART1_0-u51505
| Transcript | Length(bp) | Description |
|---|---|---|
| BART1_0-u51505.001 | 3020 | 3020 bp MSTRG.51505.1 MSTRG.51505 |
| BART1_0-u51505.002 | 3102 | 3102 bp MSTRG.51505.2 MSTRG.51505 |
| BART1_0-u51505.003 | 2247 | 2247 bp MSTRG.51505.3 MSTRG.51505 |
| BART1_0-u51505.004 | 2064 | 2064 bp MSTRG.51505.4 MSTRG.51505 |
| BART1_0-u51505.005 | 1641 | 1641 bp MSTRG.51505.5 MSTRG.51505 |
| BART1_0-u51505.006 | 1694 | 1694 bp MSTRG.51505.6 MSTRG.51505 |
| BART1_0-u51505.007 | 2147 | 2147 bp MSTRG.51505.7 MSTRG.51505 |
| BART1_0-u51505.008 | 2067 | 2067 bp MSTRG.51505.8 MSTRG.51505 |
| BART1_0-u51505.009 | 2075 | 2075 bp MSTRG.51505.9 MSTRG.51505 |
| BART1_0-u51505.010 | 1551 | 1551 bp MSTRG.51505.10 MSTRG.51505 |
Exon Structure of BART1_0-u51505
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os06g14040.1 | +3 | 0.0 | 707 | 387/431 (90%) | protein|ThiF family domain containing protein, putative, expressed |
| TAIR PP10 | AT5G37530 @ ARAPORT AT5G37530.2 @ TAIR |
+3 | 0.0 | 552 | 303/391 (77%) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr5:14906505-14909020 FORWARD LENGTH=456 |
| BRACH PP3 | Bradi1g44307.6.p | +3 | 0.0 | 720 | 417/462 (90%) | pacid=32793958 transcript=Bradi1g44307.6 locus=Bradi1g44307 ID=Bradi1g44307.6.v3.1 annot-version=v3.1 |
GO Annotation
Generated by PANNZER| GO ID | GO terms |
|---|---|
| GO:0016779 | nucleotidyltransferase activity |
| GO:0061504 | cyclic threonylcarbamoyladenosine biosynthetic process |
| GO:0016021 | integral component of membrane |
| GO:0008641 | ubiquitin-like modifier activating enzyme activity |
| GO:0016485 | protein processing |
| GO:0061605 | molybdopterin-synthase adenylyltransferase activity |
| GO:0009536 | plastid |
| GO:0061503 | tRNA threonylcarbamoyladenosine dehydratase |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons