- Transcript BART1_0-u51505.008
- Transcript IDBART1_0-u51505.008
- Gene IDBART1_0-u51505
Barley RTD
Exon Structure of BART1_0-u51505.008
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 112660066 | 112659908 | + |
| chr7H | 2 | 112660236 | 112660166 | + |
| chr7H | 3 | 112660580 | 112660502 | + |
| chr7H | 4 | 112661070 | 112660923 | + |
| chr7H | 5 | 112661592 | 112661421 | + |
| chr7H | 6 | 112662272 | 112662138 | + |
| chr7H | 7 | 112662527 | 112662396 | + |
| chr7H | 8 | 112662915 | 112662700 | + |
| chr7H | 9 | 112665447 | 112665323 | + |
| chr7H | 10 | 112665926 | 112665869 | + |
| chr7H | 11 | 112666810 | 112666039 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 2.86528 | 4.32031 | 2.20161 |
| morex | ETI | 0.490126 | 0.520459 | 0.322415 |
| morex | LEA | 1.33747 | 0.444866 | 0.455532 |
| morex | EPI | 0 | 0.119469 | 0.368816 |
| morex | ROO | 1.00289 | 0.897812 | 0.851199 |
| morex | ROO2 | 2.44069 | 1.9627 | 1.92996 |
| morex | NOD | 0.639991 | 0.511007 | 1.35704 |
| morex | RAC | 1.01922 | 1.11739 | 1.60513 |
| morex | INF1 | 11.2485 | 7.89211 | 7.1216 |
| morex | INF2 | 6.36228 | 4.37484 | 7.17888 |
| morex | CAR5 | 3.49394 | 2.56455 | 2.8214 |
| morex | CAR15 | 0.768587 | 0.893399 | 0.603431 |
| morex | LEM | 0.946989 | 0.224245 | 0.358901 |
| morex | LOD | 0.287463 | 0.897069 | 0.677144 |
| morex | PAL | 1.3131 | 1.23032 | 0.82599 |
| morex | SEN | 0.573985 | 0.32542 | 0.536891 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os06g14040.1 | +3 | 0.0 | 593 | 294/320 (92%) | protein|ThiF family domain containing protein, putative, expressed |
| TAIR PP10 | AT5G37530 @ ARAPORT AT5G37530.1 @ TAIR |
+3 | 7e-162 | 473 | 237/318 (75%) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr5:14906505-14909020 FORWARD LENGTH=457 |
| BRACH PP3 | Bradi1g44307.5.p | +3 | 0.0 | 606 | 323/394 (82%) | pacid=32793960 transcript=Bradi1g44307.5 locus=Bradi1g44307 ID=Bradi1g44307.5.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2067 bp)
>BART1_0-u51505.008 2067 150831_barley_pseudomolecules CTACCTTCTGATCGGCCGAGCAGGGGTTAGGGTTCTAGGCGGCTGCGCCGGAGACATGGA GGAGAGGGCGAGGCAGCTGCTCCTCCTCGCCGCCGTCGCGGGCGCTGGCGCCGTAGTAGG CGGGCTCTCCGTTGCTTCCGTCTTCAGCTTCCTCTCCAGGGCGAAGCGGAGAGAGGGATA CGTGCGCAAGCTGTTGGAATCCAATGGCGGTGCTGGTGGTACGCACGCTGGCAGTACTGG ACCGGGAGCACGTCTGCATGCTAGCTCGGATCTTCTCTCTGATGAAGTTGTCGCTGAGCA GCTTACAAGGAATATACAATTTTTTGGAGTCCAATCTCAGAAGAAAGTTACTGAATCTTT TGTTGTAGTCATTGGTCTTGGAGGAGTTGGCAGTCATGCTGCTTCCATGCTCCTCAGATC TGGGGTTGGCAGGTTGCTCCTAGTAGATTTTGATCAGAGAGGACGTGGGGACCCCAAAAG CATCATGCCTCAAGAAGCATTTCTCATTGATATATCCAGAGTGTCAAATAGAAGCAAGAG TGCAGTTGTATGATTCATCAGCTGAGGACGAAATTCTTTCTGGACAGCCAGATTTTGTTC TTGATTGCATAGATAACATTGATACTAAGGTGTCTCTCCTTGCGGCTTGCGTACGCAGAG GGTTAAGGGTACTTTCTGCAATGGGGGCTGGAGCTCGAGCTGACCCGACCCGAATCCGTG TTGCGGATTTGAGAGAATCAAGCAATGATCCCCTTTCTCGGGCGGTACGGCATCGGCTGA AGAAGGATCATGGAATTGAAGGTGGAATACCAGTAGTTTTTTCAATGGAGAAGCCCAAGG CAAAGCTACTTCCCTTTCAAGGTTCGAAAGAAGAGGAAACTCCATCAGATTACCAGATTG TGCCAGGATTCAGGGTTCGCATTATCCCAGTACTGGGAACTATCCCTGCAATATTTGGTC AAGTTATGGCCTCCTATGTGGTTACTCAGCTTGCCCAGTTTGATTTTCAAACTGAACCAA TTGTTAACCTGGATTTGGATCATTACCGCGTTCTTCACCATCGTCTTCTTGAGCACGAGG AGCTGATATATGGGTCAGCCGAGCAAGTTTTGGTTGATGCTGAAGAGGTGATGTACATTG TGAAAGAATTGTGGCGTGGCCGCAGTGCTAGGGACCAAAACATGAAGGATACTGGCCGGA AAATGTGGAGATCTGTCAACGAACTGATGCTTGTTCGGTGGGACAAAACGAAGCCCGCTG GTGTGTCAAACTTAATACTTCTCAAGTTCAGTGAGGCGGATGCACATGAATCCACCACGC TTGATCAGCTAAAAGATGAAGAACCTGAATTCTACGCCATGGTTTCACGTGTTCTGAAAC GAGCCGAAACGGAGTTTGCTTTATGAGCTGGTCACCGATGTTACTGGATTTCTACGATTG CTATACCGTCATAAGCCGTGCAATGCTACTGGACTAGTCAGGTAGGTTTCAGTTTTGCAT GGTCTGATCTTGTGTGATAGTGACGAGGAGCAAGTAGATGATGCACACTTCCCTGAATTT TTGTTTTGGCCATAGAACTAGGACTTGTTGGTGATGCTTTGATTTCTCTGGAAGGATCCT CCTGTAATCGTCTCCCCGGGATTTTTTATGCGTTTGAGATTGTCTCATGTAAACCAAATC AGAGATTATATTGAGCATACGATATGCGGCATATTCAAATGAATTCTAAGAGATTCGAGC TGTGGATGTCCAACAGGCTCTTGCAATCAACGCCAGACGCTGCCGGGTTCGCCAAGGCGG CCCGTTGTCCTGTTCAGTAGTAGTACTACTTTTCAAGGCCATATTCCTTTATATCCTGTC GATGGAAAAAGCCAAGACAAAGACATATCCCCTTTCACTCTGCAGCCTTTTCCAAGACAA AGCCATGTGTGTTTAATGTAGTCAATGTGGTCCTTTTCACTCCCACTTTGAGACATATGG ATCCATCGTTCCTTTCCAAAAATGTAGCATTAGAATTGTGCTGACACCTGACAAGTATAG TACCGTTGATATGCAGGCCTAAAGAAT
Protein Sequence (241 aa)
>BART1_0-u51505.008 241 150831_barley_pseudomolecules MGAGARADPTRIRVADLRESSNDPLSRAVRHRLKKDHGIEGGIPVVFSMEKPKAKLLPFQ GSKEEETPSDYQIVPGFRVRIIPVLGTIPAIFGQVMASYVVTQLAQFDFQTEPIVNLDLD HYRVLHHRLLEHEELIYGSAEQVLVDAEEVMYIVKELWRGRSARDQNMKDTGRKMWRSVN ELMLVRWDKTKPAGVSNLILLKFSEADAHESTTLDQLKDEEPEFYAMVSRVLKRAETEFA L