- Transcript BART1_0-u51505.006
- Transcript IDBART1_0-u51505.006
- Gene IDBART1_0-u51505
Barley RTD
Exon Structure of BART1_0-u51505.006
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 112660066 | 112659895 | + |
| chr7H | 2 | 112660224 | 112660166 | + |
| chr7H | 3 | 112660580 | 112660502 | + |
| chr7H | 4 | 112661070 | 112660923 | + |
| chr7H | 5 | 112661592 | 112661380 | + |
| chr7H | 6 | 112662272 | 112662138 | + |
| chr7H | 7 | 112662527 | 112662396 | + |
| chr7H | 8 | 112662915 | 112662700 | + |
| chr7H | 9 | 112665447 | 112665323 | + |
| chr7H | 10 | 112665926 | 112665869 | + |
| chr7H | 11 | 112666224 | 112666039 | + |
| chr7H | 12 | 112666489 | 112666319 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 4.97023 | 10.8941 | 9.10676 |
| morex | ETI | 0.142051 | 0.833017 | 0.491547 |
| morex | LEA | 2.74247 | 2.4888 | 0 |
| morex | EPI | 0 | 0 | 0 |
| morex | ROO | 0.847742 | 7.34438 | 2.67173 |
| morex | ROO2 | 4.63638 | 2.52514 | 3.32958 |
| morex | NOD | 1.83645 | 0 | 1.91413 |
| morex | RAC | 0.237291 | 1.6913 | 2.59704 |
| morex | INF1 | 29.5954 | 25.0036 | 18.1557 |
| morex | INF2 | 11.909 | 15.4283 | 9.99396 |
| morex | CAR5 | 14.7928 | 13.2931 | 13.9419 |
| morex | CAR15 | 0 | 0.591707 | 1.04636 |
| morex | LEM | 0 | 0.343955 | 0.311858 |
| morex | LOD | 0 | 0 | 0 |
| morex | PAL | 0.0147775 | 0.362352 | 0.155493 |
| morex | SEN | 0.134553 | 0 | 0.0000538492 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os06g14040.1 | +3 | 0.0 | 707 | 387/431 (90%) | protein|ThiF family domain containing protein, putative, expressed |
| TAIR PP10 | AT5G37530 @ ARAPORT AT5G37530.2 @ TAIR |
+3 | 0.0 | 552 | 303/391 (77%) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr5:14906505-14909020 FORWARD LENGTH=456 |
| BRACH PP3 | Bradi1g44307.6.p | +3 | 0.0 | 720 | 417/462 (90%) | pacid=32793958 transcript=Bradi1g44307.6 locus=Bradi1g44307 ID=Bradi1g44307.6.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1694 bp)
>BART1_0-u51505.006 1694 150831_barley_pseudomolecules CCAAGACTTTCCTCTACCTTCTGATCGGCCGAGCAGGGGTTAGGGTTCTAGGCGGCTGCG CCGGAGACATGGAGGAGAGGGCGAGGCAGCTGCTCCTCCTCGCCGCCGTCGCGGGCGCTG GCGCCGTAGTAGGCGGGCTCTCCGTTGCTTCCGTCTTCAGCTTCCTCTCCAGGGCGAAGC GGAGAGAGGGATACGTGCGCAAGCTGTTGGAATCCAATGGCGGTGCTGGTGGCAGTACTG GACCGGGAGCACGTCTGCATGCTAGCTCGGATCTTCTCTCTGATGAAGTTGTCGCTGAGC AGCTTACAAGGAATATACAATTTTTTGGAGTCCAATCTCAGAAGAAAGTTACTGAATCTT TTGTTGTAGTCATTGGTCTTGGAGGAGTTGGCAGTCATGCTGCTTCCATGCTCCTCAGAT CTGGGGTTGGCAGGTTGCTCCTAGTAGATTTTGATCAGGTCTCACTCTCATCACTAAATC GGCATGCTGTGGCAACCAGAGAGGACGTGGGGACCCCAAAAGCATCATGCCTCAAGAAGC ATTTCTCATTGATATATCCAGAGTGTCAAATAGAAGCAAGAGTGCAGTTGTATGATTCAT CAGCTGAGGACGAAATTCTTTCTGGACAGCCAGATTTTGTTCTTGATTGCATAGATAACA TTGATACTAAGGTGTCTCTCCTTGCGGCTTGCGTACGCAGAGGGTTAAGGGTACTTTCTG CAATGGGGGCTGGAGCTCGAGCTGACCCGACCCGAATCCGTGTTGCGGATTTGAGAGAAT CAAGCAATGATCCCCTTTCTCGGGCGGTACGGCATCGGCTGAAGAAGGATCATGGAATTG AAGGTGGAATACCAGTAGTTTTTTCAATGGAGAAGCCCAAGGCAAAGCTACTTCCCTTTC AAGGTTCGAAAGAAGAGGAAACTCCATCAGATTACCAGATTGTGCCAGGATTCAGGGTTC GCATTATCCCAGTACTGGGAACTATCCCTGCAATATTTGGTCAAGTTATGGCCTCCTATG TGGTTACTCAGCTTGCCCAGTTTGATTTTCAAACTGAACCAATTGTTAACCTGGATTTGG ATCATTACCGCGTTCTTCACCATCGTCTTCTTGAGCACGAGGAGCTGATATATGGGTCAG CCGAGCAAGTTTTGGTTGATGCTGAAGAGGTGATGTACATTGTGAAAGAATTGTGGCGTG GCCGCAGTGCTAGGGACCAAAACATGAAGGATACTGGCCGGAAAATGTGGAGATCTGTCA ACGAACTGATGCTTGTTCGGTGGGACAAAACGAAGCCCGCTGGTGTGTCAAACTTAATAC TTCTCAAGTTCAGTGAGGCGGATGCACATGAATCCACCACGCTTGATCAGCTAAAAGATG AAGAACCTGAATTCTACGCCATGGTTTCACGTGTTCTGAAACGAGCCGAAACGGAGTTTG CTTTATGAGCTGGTCACCGATGTTACTGGATTTCTACGATTGCTATACCGTCATAAGCCG TGCAATGCTACTGGACTAGTCAGAACTAGGACTTGTTGGTGATGCTTTGATTTCTCTGGA AGGATCCTCCTGTAATCGTCTCCCCGGGATTTTTTATGCGTTTGAGATTGTCTCATGTAA ACCAAATCAGAGATTATATTGAGCATACGATATGCGGCATATTCAAATGAATTCTAAGAG ATTCGAGCTGTGGA
Protein Sequence (459 aa)
>BART1_0-u51505.006 459 150831_barley_pseudomolecules MEERARQLLLLAAVAGAGAVVGGLSVASVFSFLSRAKRREGYVRKLLESNGGAGGSTGPG ARLHASSDLLSDEVVAEQLTRNIQFFGVQSQKKVTESFVVVIGLGGVGSHAASMLLRSGV GRLLLVDFDQVSLSSLNRHAVATREDVGTPKASCLKKHFSLIYPECQIEARVQLYDSSAE DEILSGQPDFVLDCIDNIDTKVSLLAACVRRGLRVLSAMGAGARADPTRIRVADLRESSN DPLSRAVRHRLKKDHGIEGGIPVVFSMEKPKAKLLPFQGSKEEETPSDYQIVPGFRVRII PVLGTIPAIFGQVMASYVVTQLAQFDFQTEPIVNLDLDHYRVLHHRLLEHEELIYGSAEQ VLVDAEEVMYIVKELWRGRSARDQNMKDTGRKMWRSVNELMLVRWDKTKPAGVSNLILLK FSEADAHESTTLDQLKDEEPEFYAMVSRVLKRAETEFAL