- Transcript BART1_0-u51505.003
- Transcript IDBART1_0-u51505.003
- Gene IDBART1_0-u51505
Barley RTD
Exon Structure of BART1_0-u51505.003
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 112660066 | 112659859 | + |
| chr7H | 2 | 112660236 | 112660166 | + |
| chr7H | 3 | 112660580 | 112660502 | + |
| chr7H | 4 | 112661070 | 112660982 | + |
| chr7H | 5 | 112661592 | 112661380 | + |
| chr7H | 6 | 112662272 | 112662138 | + |
| chr7H | 7 | 112662527 | 112662396 | + |
| chr7H | 8 | 112662915 | 112662700 | + |
| chr7H | 9 | 112665447 | 112665323 | + |
| chr7H | 10 | 112665926 | 112665869 | + |
| chr7H | 11 | 112666959 | 112666039 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0.00000000171482 | 1.77872 |
| morex | ETI | 0 | 0 | 0 |
| morex | LEA | 0 | 0.97886 | 0.663279 |
| morex | EPI | 0.21264 | 0.592251 | 0 |
| morex | ROO | 0 | 0.861647 | 0 |
| morex | ROO2 | 0 | 0.334879 | 0 |
| morex | NOD | 0.370767 | 0.0609917 | 0 |
| morex | RAC | 0 | 0.240357 | 0.568903 |
| morex | INF1 | 1.32268 | 1.99965 | 1.47628 |
| morex | INF2 | 0.691306 | 2.48596 | 2.21777 |
| morex | CAR5 | 1.45425 | 1.60204 | 2.20416 |
| morex | CAR15 | 0.417463 | 1.12392 | 0.497403 |
| morex | LEM | 0 | 0.329848 | 0 |
| morex | LOD | 0.309334 | 0.358973 | 0 |
| morex | PAL | 0 | 0.000000000712487 | 0 |
| morex | SEN | 0.00000000107906 | 0.028498 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os06g14040.1 | +1 | 0.0 | 630 | 329/352 (93%) | protein|ThiF family domain containing protein, putative, expressed |
| TAIR PP10 | AT5G37530 @ ARAPORT AT5G37530.1 @ TAIR |
+1 | 5e-175 | 509 | 271/350 (77%) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr5:14906505-14909020 FORWARD LENGTH=457 |
| BRACH PP3 | Bradi1g44307.5.p | +1 | 0.0 | 680 | 361/388 (93%) | pacid=32793960 transcript=Bradi1g44307.5 locus=Bradi1g44307 ID=Bradi1g44307.5.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2247 bp)
>BART1_0-u51505.003 2247 150831_barley_pseudomolecules ATCAGTTAGTAGCGGGCCGCGCCGGCTCGGTCGCCTCCAAGACTTTCCTCTACCTTCTGA TCGGCCGAGCAGGGGTTAGGGTTCTAGGCGGCTGCGCCGGAGACATGGAGGAGAGGGCGA GGCAGCTGCTCCTCCTCGCCGCCGTCGCGGGCGCTGGCGCCGTAGTAGGCGGGCTCTCCG TTGCTTCCGTCTTCAGCTTCCTCTCCAGGGCGAAGCGGAGAGAGGGATACGTGCGCAAGC TGTTGGAATCCAATGGCGGTGCTGGTGGTACGCACGCTGGCAGTACTGGACCGGGAGCAC GTCTGCATGCTAGCTCGGATCTTCTCTCTGATGAAGTTGTCGCTGAGCAGCTTACAAGTC ATTGGTCTTGGAGGAGTTGGCAGTCATGCTGCTTCCATGCTCCTCAGATCTGGGGTTGGC AGGTTGCTCCTAGTAGATTTTGATCAGGTCTCACTCTCATCACTAAATCGGCATGCTGTG GCAACCAGAGAGGACGTGGGGACCCCAAAAGCATCATGCCTCAAGAAGCATTTCTCATTG ATATATCCAGAGTGTCAAATAGAAGCAAGAGTGCAGTTGTATGATTCATCAGCTGAGGAC GAAATTCTTTCTGGACAGCCAGATTTTGTTCTTGATTGCATAGATAACATTGATACTAAG GTGTCTCTCCTTGCGGCTTGCGTACGCAGAGGGTTAAGGGTACTTTCTGCAATGGGGGCT GGAGCTCGAGCTGACCCGACCCGAATCCGTGTTGCGGATTTGAGAGAATCAAGCAATGAT CCCCTTTCTCGGGCGGTACGGCATCGGCTGAAGAAGGATCATGGAATTGAAGGTGGAATA CCAGTAGTTTTTTCAATGGAGAAGCCCAAGGCAAAGCTACTTCCCTTTCAAGGTTCGAAA GAAGAGGAAACTCCATCAGATTACCAGATTGTGCCAGGATTCAGGGTTCGCATTATCCCA GTACTGGGAACTATCCCTGCAATATTTGGTCAAGTTATGGCCTCCTATGTGGTTACTCAG CTTGCCCAGTTTGATTTTCAAACTGAACCAATTGTTAACCTGGATTTGGATCATTACCGC GTTCTTCACCATCGTCTTCTTGAGCACGAGGAGCTGATATATGGGTCAGCCGAGCAAGTT TTGGTTGATGCTGAAGAGGTGATGTACATTGTGAAAGAATTGTGGCGTGGCCGCAGTGCT AGGGACCAAAACATGAAGGATACTGGCCGGAAAATGTGGAGATCTGTCAACGAACTGATG CTTGTTCGGTGGGACAAAACGAAGCCCGCTGGTGTGTCAAACTTAATACTTCTCAAGTTC AGTGAGGCGGATGCACATGAATCCACCACGCTTGATCAGCTAAAAGATGAAGAACCTGAA TTCTACGCCATGGTTTCACGTGTTCTGAAACGAGCCGAAACGGAGTTTGCTTTATGAGCT GGTCACCGATGTTACTGGATTTCTACGATTGCTATACCGTCATAAGCCGTGCAATGCTAC TGGACTAGTCAGGTAGGTTTCAGTTTTGCATGGTCTGATCTTGTGTGATAGTGACGAGGA GCAAGTAGATGATGCACACTTCCCTGAATTTTTGTTTTGGCCATAGAACTAGGACTTGTT GGTGATGCTTTGATTTCTCTGGAAGGATCCTCCTGTAATCGTCTCCCCGGGATTTTTTAT GCGTTTGAGATTGTCTCATGTAAACCAAATCAGAGATTATATTGAGCATACGATATGCGG CATATTCAAATGAATTCTAAGAGATTCGAGCTGTGGATGTCCAACAGGCTCTTGCAATCA ACGCCAGACGCTGCCGGGTTCGCCAAGGCGGCCCGTTGTCCTGTTCAGTAGTAGTACTAC TTTTCAAGGCCATATTCCTTTATATCCTGTCGATGGAAAAAGCCAAGACAAAGACATATC CCCTTTCACTCTGCAGCCTTTTCCAAGACAAAGCCATGTGTGTTTAATGTAGTCAATGTG GTCCTTTTCACTCCCACTTTGAGACATATGGATCCATCGTTCCTTTCCAAAAATGTAGCA TTAGAATTGTGCTGACACCTGACAAGTATAGTACCGTTGATATGCAGGCCTAAAGAATTT ATTCCATCCAGTTAAGCAGGATAGCATATTTGTAGCTAAAATTGAGTTCGGTTTTGATCG CTTGTATAGTCATATCACTATCGCCCGCCACCGGTGGCAAAACCACCCTTGGCAGTACAA TACTTGAGGAAGTGGTTCTAACAAAAG
Protein Sequence (394 aa)
>BART1_0-u51505.003 394 150831_barley_pseudomolecules MAVLVVRTLAVLDREHVCMLARIFSLMKLSLSSLQVIGLGGVGSHAASMLLRSGVGRLLL VDFDQVSLSSLNRHAVATREDVGTPKASCLKKHFSLIYPECQIEARVQLYDSSAEDEILS GQPDFVLDCIDNIDTKVSLLAACVRRGLRVLSAMGAGARADPTRIRVADLRESSNDPLSR AVRHRLKKDHGIEGGIPVVFSMEKPKAKLLPFQGSKEEETPSDYQIVPGFRVRIIPVLGT IPAIFGQVMASYVVTQLAQFDFQTEPIVNLDLDHYRVLHHRLLEHEELIYGSAEQVLVDA EEVMYIVKELWRGRSARDQNMKDTGRKMWRSVNELMLVRWDKTKPAGVSNLILLKFSEAD AHESTTLDQLKDEEPEFYAMVSRVLKRAETEFAL