- Transcript BART1_0-u50476.002
- Transcript IDBART1_0-u50476.002
- Gene IDBART1_0-u50476
Barley RTD
Exon Structure of BART1_0-u50476.002
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 50932604 | 50931866 | - |
| chr7H | 2 | 50932782 | 50932689 | - |
| chr7H | 3 | 50932907 | 50932874 | - |
| chr7H | 4 | 50933968 | 50933808 | - |
| chr7H | 5 | 50934628 | 50934396 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0 | 0 |
| morex | ETI | 0 | 2.13366 | 1.75248 |
| morex | LEA | 0 | 0 | 0 |
| morex | EPI | 6.26389 | 7.7979 | 9.24166 |
| morex | ROO | 0 | 0 | 0 |
| morex | ROO2 | 0 | 0 | 0 |
| morex | NOD | 0 | 0.197061 | 0 |
| morex | RAC | 0.504218 | 0 | 0 |
| morex | INF1 | 0 | 0 | 0 |
| morex | INF2 | 0 | 0 | 0 |
| morex | CAR5 | 0 | 0 | 0 |
| morex | CAR15 | 0 | 0 | 0 |
| morex | LEM | 0.302453 | 0 | 0.00000561531 |
| morex | LOD | 0.624737 | 0 | 0 |
| morex | PAL | 0.0566004 | 0 | 0 |
| morex | SEN | 2.75846 | 0.00000104629 | 8.64671 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os06g07760.1 | +2 | 3e-71 | 222 | 120/154 (78%) | protein|sulfiredoxin-1, putative, expressed |
| TAIR PP10 | AT1G31170 @ ARAPORT AT1G31170.2 @ TAIR |
+2 | 3e-48 | 160 | 72/88 (82%) | Symbols: ATSRX, SRX | sulfiredoxin | chr1:11133521-11134228 FORWARD LENGTH=125 |
| BRACH PP3 | Bradi1g47970.2.p | +2 | 1e-80 | 246 | 128/149 (86%) | pacid=32792060 transcript=Bradi1g47970.2 locus=Bradi1g47970 ID=Bradi1g47970.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1261 bp)
>BART1_0-u50476.002 1261 150831_barley_pseudomolecules TGCAGATCGATGCGACGCTCCGACACGTTAAGCAGAGCAGTAAACGGAAGCAGCAGCGGC AGCACGAGCGCGACCACGAATGGCGTCTACCTCGAGCTTGGATTTGGGAAAGATCGTGCC GCCGGCCGGCTTCCTCCTCCACCGCCGCACCGCCGTTCCCAGCGCCCCTGTTCTCCGGGG GAGGAGCACGAGCGGGCAGTGCGGCCTCGCTGTCTCGGCCTCGTCTTCCAATGCTGGCCT CTTCCCATTGAGCGACACGGAGAAGAAAGGCCCTGTGGTGATGGAGATCCCGCTGGAAGA TATCCGTAGGCCGCTAATGCGAACGCGTGCTAACGATCCTGAGAAGGTGCAGGAGCTCAT GGACAGCATCCGTGTCATCGGCCTCCAAGTACCTATCGACGTGCTGGAAGTCGACGGAGT CTACTACGGATTCTCTGGATGCCATCGATACGAGGCTCACCAGCGCCTAGGACTCCCAAC CATCCGCTGCAAAGTCCGCCGAGGGACCAAAGAAACACTGCGGCACCATATGCGATGAAT CGGTGGTTAGCGATGAATGGACAATCCATGGATTGCTTCAGCCAGGAAGTGTCGTCTGTT ATGTCTAGTGCTAAAAAAAACTTTCTCCTCCTGTAATCATCTATACGTGTAAATGTTACC CAATCCAATGTATAAAATAGCACAATTCAGCTGGCGCTTCTGCTCCTTCTGTTGCATACA GTAATCTCTACAGCTCTGCTTGGGCAAGAATTCAACTGAAGGTTCAGGCTGGAGTGCAGG GTCTAAACTCTCAGAAATGCAGTGCCCCCTGAAGCTTCATTAGCAAATTCAGGGCCATTC GGGGTGCGGTTTTTTCCTTCTCATATGCACTGTGAATTGACTGGTTACTGTGAAAGTTGC AATATCTGAAACTTTGAGATCGTCATCCTCAGAAAACAGTGCAGTCTCTCTATTCACTAG ATTCTGAAGATAAAATGTTTTCAGAAGAGATACAAAATGAAGGAAGCAGTTCTATGTTCC TGATAAGAGTGTAACTTGGCACCTGATCTGCCCCTACCCCGTGTTCAAACATAGAGCATC TCCTACATATGATGGATAAGTTGGTGCCCAAAAATAGTTTTATGACAGGAGAGAGAAGGT TTTTTACGTCATTGTGGCGGCTATTGCTCCATCAGGTGATGTAAGAGTAGTGGCCGAAAT GGCCTTTTTTCTTCGTGGCTGCGTTTTTGCATATGCATCACCTGTTGGAGCGGTGTTTTT G
Protein Sequence (152 aa)
>BART1_0-u50476.002 152 150831_barley_pseudomolecules MASTSSLDLGKIVPPAGFLLHRRTAVPSAPVLRGRSTSGQCGLAVSASSSNAGLFPLSDT EKKGPVVMEIPLEDIRRPLMRTRANDPEKVQELMDSIRVIGLQVPIDVLEVDGVYYGFSG CHRYEAHQRLGLPTIRCKVRRGTKETLRHHMR