Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
HORVU7Hr1G028240	84.0	-	-	2487	-475	Containing

Transcripts from Gene BART1_0-u50476

Transcript	Length(bp)	Description
BART1_0-u50476.001	1466	1466 bp MSTRG.50476.1 MSTRG.50476
BART1_0-u50476.002	1261	1261 bp MSTRG.50476.2 MSTRG.50476
BART1_0-u50476.003	1305	1305 bp MSTRG.50476.3 MSTRG.50476
BART1_0-u50476.004	634	634 bp MSTRG.50476.4 MSTRG.50476

Exon Structure of BART1_0-u50476

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os06g07760.1	+2	9e-64	204	122/154 (79%)	protein|sulfiredoxin-1, putative, expressed
TAIR PP10	AT1G31170 @ ARAPORT AT1G31170.2 @ TAIR	+2	4e-47	159	72/88 (82%)	Symbols: ATSRX, SRX | sulfiredoxin | chr1:11133521-11134228 FORWARD LENGTH=125
BRACH PP3	Bradi1g47970.2.p	+2	2e-74	232	130/149 (87%)	pacid=32792060 transcript=Bradi1g47970.2 locus=Bradi1g47970 ID=Bradi1g47970.2.v3.1 annot-version=v3.1

GO Annotation

Generated by PANNZER

GO ID	GO terms
GO:0005524	ATP binding
GO:0006979	response to oxidative stress
GO:0005634	nucleus
GO:0003677	DNA binding
GO:0009507	chloroplast
GO:0005739	mitochondrion
GO:0032542	sulfiredoxin activity
GO:0098869	cellular oxidant detoxification
GO:0016021	integral component of membrane
GO:0033554	cellular response to stress
GO:0006355	regulation of transcription, DNA-templated
GO:0055114	oxidation-reduction process

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons