- Transcript BART1_0-u47383.005
- Transcript IDBART1_0-u47383.005
- Gene IDBART1_0-u47383
Barley RTD
Exon Structure of BART1_0-u47383.005
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr6H | 1 | 557776138 | 557775757 | - |
| chr6H | 2 | 557776874 | 557776813 | - |
| chr6H | 3 | 557777077 | 557776989 | - |
| chr6H | 4 | 557777445 | 557777334 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.622628 | 1.17026 | 0 |
| morex | ETI | 1.70783 | 1.54456 | 2.54131 |
| morex | LEA | 1.21205 | 0.513977 | 2.75897 |
| morex | EPI | 3.07934 | 4.13906 | 1.03098 |
| morex | ROO | 0 | 0.997373 | 0.667006 |
| morex | ROO2 | 0 | 0 | 0.338928 |
| morex | NOD | 1.57422 | 10.2164 | 4.71521 |
| morex | RAC | 0.942622 | 1.9622 | 1.65876 |
| morex | INF1 | 2.0145 | 5.01508 | 4.19393 |
| morex | INF2 | 0.626406 | 2.00872 | 3.75213 |
| morex | CAR5 | 2.76052 | 1.81048 | 2.9733 |
| morex | CAR15 | 0 | 0 | 0 |
| morex | LEM | 0 | 1.7736 | 0.873174 |
| morex | LOD | 0.501477 | 1.93714 | 0.470682 |
| morex | PAL | 0 | 0 | 0.883117 |
| morex | SEN | 0 | 0.409684 | 1.64124 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | None | - | - | - | - | - |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | None | - | - | - | - | - |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (645 bp)
>BART1_0-u47383.005 645 150831_barley_pseudomolecules GAGTATATTACTACTACAGATCATAAATAAATCTGATTGCTAATTTTTTATCTTTTAGGT ATTCGAGACTGTACAACAAGTACATGATGTTCCCTTTGGTTCCTATTTTGAGATACACTG TAGATGGTCTGTGAAAACCATCGATTCTAGTTCGTGCAGTGTTGACATTAGTGCTGGTTG GTGTTTTCTTCTGATCTCCACGTGCACATTTCAAGAAATGGTGCATAATGCAGTCTAAGA TAAAGAGCGGTGCTGTGGACGAGTTAAAGAAGGAAACTAGAGAAATGTTAGGGTTTGCGG AGTCGTATATGCTAAAAGTTAGCTTCCCTACCCAAGAAGACAACACGGAGCCAGACGCAG ATGACAAACCTGGTGATCAGTAACTCATGACAGCCTATTTGAGCATGCTCTCTTCTAATG GCAGCCACGGTCCCGTGATGGTGGTTTATGATGATACCCAGTGGACCTGTAACTGTAACT AGTCCAAATTTGATATGATTAGCTGCCTTAAAGAAGAAAAATGTTTAGGAAGTCCTATAT TGTGTAAACTTTTGGCTTACGTATATCTCTTTTTCTTTAAAAGAGAAGGATAACCCTGGC CTCTGTATCATTGCATGCACACAACCATATTTATTAAACGACGAG
Protein Sequence ( aa)
>BART1_0-u47383.005 150831_barley_pseudomolecules