- Gene BART1_0-u47383
- Gene IDBART1_0-u47383
- Location chr6H: 557775600 - 557785060
Barley RTD
Matching HORVU genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).| HORVU ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
|---|---|---|---|---|---|---|
| HORVU6Hr1G085120 | 97.8 | - | - | 9254 | -207 | Containing |
Transcripts from Gene BART1_0-u47383
| Transcript | Length(bp) | Description |
|---|---|---|
| BART1_0-u47383.001 | 2478 | 2478 bp MSTRG.47383.1 MSTRG.47383 |
| BART1_0-u47383.002 | 2386 | 2386 bp MSTRG.47383.2 MSTRG.47383 |
| BART1_0-u47383.003 | 2415 | 2415 bp MSTRG.47383.3 MSTRG.47383 |
| BART1_0-u47383.004 | 2199 | 2199 bp MSTRG.47383.4 MSTRG.47383 |
| BART1_0-u47383.005 | 645 | 645 bp MSTRG.47383.5 MSTRG.47383 |
| BART1_0-u47383.006 | 1962 | 1962 bp MSTRG.47383.6 MSTRG.47383 |
| BART1_0-u47383.007 | 2636 | 2636 bp MSTRG.47383.7 MSTRG.47383 |
| BART1_0-u47383.008 | 1068 | 1068 bp MSTRG.47383.8 MSTRG.47383 |
| BART1_0-u47383.009 | 1865 | 1865 bp MSTRG.47383.9 MSTRG.47383 |
Exon Structure of BART1_0-u47383
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os09g34130.1 | +3 | 6e-146 | 445 | 209/262 (80%) | protein|GRAM domain containing protein, expressed |
| TAIR PP10 | AT3G59660 @ ARAPORT AT3G59660.1 @ TAIR |
+3 | 6e-110 | 350 | 161/229 (70%) | Symbols: | C2 domain-containing protein / GRAM domain-containing protein | chr3:22034426-22038484 REVERSE LENGTH=594 |
| BRACH PP3 | Bradi4g35301.2.p | +3 | 2e-154 | 462 | 228/272 (84%) | pacid=32787901 transcript=Bradi4g35301.2 locus=Bradi4g35301 ID=Bradi4g35301.2.v3.1 annot-version=v3.1 |
GO Annotation
Generated by PANNZER| GO ID | GO terms |
|---|---|
| GO:0016021 | integral component of membrane |
| GO:0050832 | defense response to fungus |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons