- Transcript BART1_0-u44413.002
- Transcript IDBART1_0-u44413.002
- Gene IDBART1_0-u44413
Barley RTD
Exon Structure of BART1_0-u44413.002
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr6H | 1 | 210489211 | 210488223 | - |
| chr6H | 2 | 210489368 | 210489301 | - |
| chr6H | 3 | 210489823 | 210489746 | - |
| chr6H | 4 | 210490007 | 210489916 | - |
| chr6H | 5 | 210490160 | 210490092 | - |
| chr6H | 6 | 210490789 | 210490666 | - |
| chr6H | 7 | 210491070 | 210490947 | - |
| chr6H | 8 | 210492067 | 210491949 | - |
| chr6H | 9 | 210493332 | 210493241 | - |
| chr6H | 10 | 210493711 | 210493511 | - |
| chr6H | 11 | 210494944 | 210494825 | - |
| chr6H | 12 | 210495512 | 210495417 | - |
| chr6H | 13 | 210495694 | 210495591 | - |
| chr6H | 14 | 210497837 | 210497329 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0 | 0 |
| morex | ETI | 5.04236 | 2.74758 | 1.00439 |
| morex | LEA | 0 | 0 | 0.00563535 |
| morex | EPI | 3.41664 | 0.515355 | 3.79679 |
| morex | ROO | 0 | 3.4086 | 0 |
| morex | ROO2 | 5.92703 | 4.52619 | 9.1541 |
| morex | NOD | 0 | 2.82585 | 0.00000743729 |
| morex | RAC | 0.000031481 | 0.0682563 | 0.00596867 |
| morex | INF1 | 0.0000000888469 | 0 | 0 |
| morex | INF2 | 0.00000000995536 | 0.0149993 | 5.52028 |
| morex | CAR5 | 8.38906 | 0 | 0.0174631 |
| morex | CAR15 | 0.0000000013736 | 0 | 0.00000000887616 |
| morex | LEM | 2.20757 | 2.1664 | 0.725468 |
| morex | LOD | 18.7551 | 11.497 | 2.39276 |
| morex | PAL | 4.76479 | 0.000000169277 | 0.000000841956 |
| morex | SEN | 3.90527 | 2.80249 | 4.39997 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os02g13110.1 | +2 | 0.0 | 850 | 459/526 (87%) | protein|serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed |
| TAIR PP10 | AT1G17720 @ ARAPORT AT1G17720.2 @ TAIR |
+2 | 0.0 | 768 | 386/506 (76%) | Symbols: ATB BETA | Protein phosphatase 2A, regulatory subunit PR55 | chr1:6093949-6098065 REVERSE LENGTH=500 |
| BRACH PP3 | Bradi3g08400.4.p | +2 | 0.0 | 929 | 488/515 (95%) | pacid=32816173 transcript=Bradi3g08400.4 locus=Bradi3g08400 ID=Bradi3g08400.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2785 bp)
>BART1_0-u44413.002 2785 150831_barley_pseudomolecules ATCCGACGGCTACTCACAACGATTGAAAGATGACACTCTAGCTTGCACGCACGGTCCACC GGCGGCCTCACGTTGGTGCTTCGCCCGATGACCTACTTTTTTCGTGTAACAAGGAAAACT GGACAGCAAATTCGTACTTTTTGGGGGACCAAACGCGAAATGCCTCCTCCCCGCAGACAG GAAAGGCAGAAAAGCGCGAGCAATACAGGGGCGCAGGGGCCGCCTGGAACTCGCTCTCCA CATCATTTGGCTGCAGCACCTCACCTCACCTCGTCTCCACCCCTCGATCTCCGTCGCCGT CTCCCCCCATTCTTCCAGGACCATCCCCCCCTCCCGATCTACCCCGCCGACGCGGTCGAG ATCCTCGTTCCATGGTGTCGTGACGGCGGCAGCGCTCATGGACCCCAAGTCCCCCGACGA CCGCCCGGAGGCGGCGGCACCGCAGCCGCTAGAGTGGCGGTTCGCGCAGGTCTTCGGCGA GCGCGGTGCTGGCGAGGACGTGCAGGAAGTTGACATCATCTCTGCGATCGAGTTTGACAA ATCTGGTGATCATCTTGCCACTGGAGATAGGGGTGGACGTGTAGTTTTGTTTGAAAGAAC TGATGCCAGGGGTAATGCCAGTCGGACAGAGCTTGAGAGACAAGATTATTCGGTGCCCAG GCATCCTGAGTTCCGCTATAAAACTGAATTTCAGAGTCATGAACCTGAGTTCGATTACCT AAAGAGTTTGGAAATAGAGGAGAAAATCAACAAGATCAAGTGGGGCCAAATAGCCAACAA TGCACTCTTTATCTTGTCTACAAATGACAAAACAATCAAGTACTGGAAGGTGCAAGACAA AAAAGTGAAACGAATTTCAGTAATGAATTTGGATACTTCCCAGAGTGCAGACAATGGGAC AACTTCTAGTTCGAGTACCAGTAGCTCTAGAGGCCTTCCTAATGGAGGATCCTCAGAAAA GTCATACAATTATGCAAACAACGATCTGCCATTCCCTCCTGGGGGATATGCATCATTGCG TTTGCCTGTGGTTACAGGCCAAGAGTTAAACCCTGTTGCTAGATGCCGGCGTGTATATGC ACACGCCCATGATTACCATATCAATTCCATTTCAAATAATAGTGATGGTGAGACATTCAT ATCAGCAGATGATCTGCGAATTAATCTGTGGAATTTGGAAATCAACAGTCAGAGCTTTAA CATTGTTGATGTGAAGCCTGTAAACATGGAGGATCTAACTGAGGTGATTACATGTGCGGA GTTCCATCCAACTCACTGTAATACACTAGCCTATAGTAGCTCAAAGGGCGCTATCAGGCT TATTGACCTGCGGCAATCAGCACTGTGTGACAACCATTCTAAGCTATTTGAGGAGCATGA AGCACCTGGATCAAAATCCTTTTTTACGGAGATAATTGCATCCGTTTCAGATATAAAGTT TGCAAGGGATGGACGGCATATTCTTAGTCGTGATTATATGACTCTCAAGTTATGGGATCT CAACATGGATTCAGGCCCAGTAGCAACTTTCCAAGTTCATGAACATTTAAGGCCTAAGCT TTGCGATCTATATGAAAATGATTCAATCTTTGACAAATTTGAATGTTGTCTGAGTGGGGA TGGTCATCGTGTTGCGACTGGCTCTTACAGTAACTTATTTCGTGTTTTTGGTTGTACTCC TGGAAATACCGAGGCAACCACTTTAGAAGCAAGCAGAAACCCTATGAGGCGTCAGGTTGC TAATCCAACAAGGCCTACAAGAACACTGACCTCTTTGACCCGTGCTGTGAGGAGAGGGGG TGAAAATGCAGGAGCCGATGGCAATGGGAATTCTAATGACTTCTCAACAAAGTTACTCCA TCTTGCGTGGCACCCAACTGAGAACTCCATTGCGTGTGCTGCTGGAAATAGCTTGTACAT GTATTATGCATAGGGAATGTGCTAGAGAAGATTCACTGTTTTTGGTTTGTGCAACGTGAA AGCTTCGGCCTTGCACATGCAACCAGAGAAATGGTGCAGAACATTGTCATCAATTCTGTG ATTGGGGGTCGGAAGAGGCGGTTGGCACCCAGGGGATGGATATCCTCCAACTCCAAGCAT AGCAGACTATTTCCTTCTGATTCTTTAGTAAATGTGAAACACAAATTCTAATCGCACGAT TGTAGCTGCATGTGTAGCCAAAACACCAGCAGTTGGAGGACAGAGCAGAAGATAGCAAGG CTGATTCTAATTTCACTTGGTCCCAGGAAATATCTGCTTACGGTGGATGTAAGAAATTTT CTTTTCTCTTCATCAAGTGTAATGTAATGCCGCCTAGCCAGGTTTAACCATCTGCTGTCA CCAACGGTGAAACATCTGTGGACATAAATTATGACTTGTAGCCCCCCCCTCCCCCCTCTA TTTGTTGGTGGTCGAAACTTACAATAAGTTTGCAGGTGTGACTCAACTCCTGCTGCATGT GATCGGCTATGACCTAAGTTGTATATGCTACATTTTGCCATGCAAAACTCACAACTAATG ATATGGATTCTTGAGTATTCATGTCTGGCTTTTGCAATATCTATGCATTTTTGCAATCCT CTTTAGATCGTGCATCAATTTTATTACACAGTAATGCCAGGACATACAATTTTATTACAC GGTAATGCCAGGACATTCTGATTAGCTCCCTTGTCAGAAGAATATTTGATTTTTCTTATA TGTACACAGTCACTAGATTTATTGAAATTCTTATAATTTTCCCGTTATGTTTTTTCTCTA TGCATGTTGTAGGATTGGAATCCAT
Protein Sequence (511 aa)
>BART1_0-u44413.002 511 150831_barley_pseudomolecules MDPKSPDDRPEAAAPQPLEWRFAQVFGERGAGEDVQEVDIISAIEFDKSGDHLATGDRGG RVVLFERTDARGNASRTELERQDYSVPRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI KWGQIANNALFILSTNDKTIKYWKVQDKKVKRISVMNLDTSQSADNGTTSSSSTSSSRGL PNGGSSEKSYNYANNDLPFPPGGYASLRLPVVTGQELNPVARCRRVYAHAHDYHINSISN NSDGETFISADDLRINLWNLEINSQSFNIVDVKPVNMEDLTEVITCAEFHPTHCNTLAYS SSKGAIRLIDLRQSALCDNHSKLFEEHEAPGSKSFFTEIIASVSDIKFARDGRHILSRDY MTLKLWDLNMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGHRVATGSYSNL FRVFGCTPGNTEATTLEASRNPMRRQVANPTRPTRTLTSLTRAVRRGGENAGADGNGNSN DFSTKLLHLAWHPTENSIACAAGNSLYMYYA