Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
HORVU6Hr1G039910	100.0	-	-	9611	18199	Partial-Overlap
HORVU6Hr1G039930	2.7	-	-	255	-9360	Containing

Transcripts from Gene BART1_0-u44413

Transcript	Length(bp)	Description
BART1_0-u44413.001	2788	2788 bp MSTRG.44413.1 MSTRG.44413
BART1_0-u44413.002	2785	2785 bp MSTRG.44413.2 MSTRG.44413
BART1_0-u44413.003	2732	2732 bp MSTRG.44413.3 MSTRG.44413
BART1_0-u44413.004	2648	2648 bp MSTRG.44413.4 MSTRG.44413
BART1_0-u44413.005	2600	2600 bp MSTRG.44413.5 MSTRG.44413
BART1_0-u44413.006	2072	2072 bp MSTRG.44413.6 MSTRG.44413
BART1_0-u44413.007	2244	2244 bp MSTRG.44413.7 MSTRG.44413
BART1_0-u44413.008	2362	2362 bp MSTRG.44413.8 MSTRG.44413
BART1_0-u44413.009	1585	1585 bp MSTRG.44413.9 MSTRG.44413
BART1_0-u44413.010	2031	2031 bp MSTRG.44413.10 MSTRG.44413
BART1_0-u44413.011	1967	1967 bp MSTRG.44413.11 MSTRG.44413
BART1_0-u44413.012	959	959 bp MSTRG.44413.12 MSTRG.44413

Exon Structure of BART1_0-u44413

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os02g13110.1	+2	0.0	856	460/526 (87%)	protein|serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed
TAIR PP10	AT1G17720 @ ARAPORT AT1G17720.1 @ TAIR	+2	0.0	769	387/507 (76%)	Symbols: ATB BETA | Protein phosphatase 2A, regulatory subunit PR55 | chr1:6093949-6098065 REVERSE LENGTH=501
BRACH PP3	Bradi3g08400.3.p	+2	0.0	930	489/516 (95%)	pacid=32816172 transcript=Bradi3g08400.3 locus=Bradi3g08400 ID=Bradi3g08400.3.v3.1 annot-version=v3.1

GO Annotation

Generated by PANNZER

GO ID	GO terms
GO:0004722	protein serine/threonine phosphatase activity
GO:0070262	peptidyl-serine dephosphorylation
GO:0003735	structural constituent of ribosome
GO:0005829	cytosol
GO:0000159	protein phosphatase type 2A complex
GO:0043666	regulation of phosphoprotein phosphatase activity
GO:0005840	ribosome
GO:0000278	mitotic cell cycle
GO:0019888	protein phosphatase regulator activity
GO:0006412	translation

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons