- Transcript BART1_0-u44239.024
- Transcript IDBART1_0-u44239.024
- Gene IDBART1_0-u44239
Barley RTD
Exon Structure of BART1_0-u44239.024
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr6H | 1 | 180783205 | 180781979 | - |
| chr6H | 2 | 180783571 | 180783362 | - |
| chr6H | 3 | 180783770 | 180783666 | - |
| chr6H | 4 | 180786158 | 180785988 | - |
| chr6H | 5 | 180786706 | 180786233 | - |
| chr6H | 6 | 180787333 | 180786860 | - |
| chr6H | 7 | 180787544 | 180787451 | - |
| chr6H | 8 | 180787695 | 180787634 | - |
| chr6H | 9 | 180787865 | 180787778 | - |
| chr6H | 10 | 180788070 | 180788009 | - |
| chr6H | 11 | 180789166 | 180789050 | - |
| chr6H | 12 | 180789415 | 180789288 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.597463 | 9.24046 | 6.32455 |
| morex | ETI | 1.22408 | 0.00880853 | 0.531705 |
| morex | LEA | 4.47524 | 1.84423 | 4.04191 |
| morex | EPI | 0 | 0 | 0.484466 |
| morex | ROO | 1.54713 | 3.00962 | 0 |
| morex | ROO2 | 4.0897 | 0.0000222903 | 3.37125 |
| morex | NOD | 8.5065 | 3.05166 | 0.86649 |
| morex | RAC | 4.31097 | 6.13162 | 6.84325 |
| morex | INF1 | 11.8728 | 9.48096 | 7.09121 |
| morex | INF2 | 9.4817 | 6.54383 | 13.6783 |
| morex | CAR5 | 24.0231 | 16.6984 | 15.7888 |
| morex | CAR15 | 8.44162 | 3.01294 | 3.9571 |
| morex | LEM | 0.051684 | 0.0181313 | 0.466579 |
| morex | LOD | 7.17769 | 1.33581 | 6.68633 |
| morex | PAL | 0.00468626 | 0.714309 | 3.97835 |
| morex | SEN | 0 | 1.60737 | 0.000000206643 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os02g11820.2 | +3 | 0.0 | 668 | 448/674 (66%) | protein|GTPase-activating protein, putative, expressed |
| TAIR PP10 | AT4G13350 @ ARAPORT AT4G13350.2 @ TAIR |
+3 | 3e-88 | 296 | 221/553 (40%) | Symbols: NIG | NSP (nuclear shuttle protein)-interacting GTPase | chr4:7770170-7773321 REVERSE LENGTH=602 |
| BRACH PP3 | Bradi3g07910.1.p | +3 | 0.0 | 824 | 531/644 (82%) | pacid=32814567 transcript=Bradi3g07910.1 locus=Bradi3g07910 ID=Bradi3g07910.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3212 bp)
>BART1_0-u44239.024 3212 150831_barley_pseudomolecules GCTCAGCGGCGACAACAAAAGAGGGGACCCTTTCCGTTGGTCGCCACCGCCAACTCGCCT CGGCCCCCGCTCCTCCGCACGCCCGCGCGGGATCTCGCGCTTGCTCCCCCCCGAGGAGGG CTCTCCCGCAGGGTTTGCGGCGGGCGATGGCGAGCCGGGTGAAGGAGGACGAGAAGAACG AGCGGGTAATACGCGGGCTGCTCAAGCTGCCCGCAAACAAGAGGTGCATCAACTGCAACA ATTTGGGACCACAATATGTATGCACAAATTTCTGGACCTTCGTTTGTACCAATTGCAGTG GAGCACACCGAGAGTTCACGCACCGGGTGAAATCTGTTTCCATGGCTAAATTTACTGCAC AAGAAGTCACTGCTCTACAAGGAGGAGGAAATGAGCGTGCTAGAGAAATATTTTTCAAGG AATGGGATTCTCAGCGCAATCCATACCCTGACAGCAGTAATACGGACAAATTGAGGAATT TCATCAAATATGTTTACGTGGAACGGCGATATACAGGAGAAAGAAGCTCTGATAGACCAC CGAGGGGAAAGGACGATAAGGATGAACATAGCGAAAATAGAAGATCTGATGGAAATCGGG GTGGTTCAAGAAGTCCACCATATAATGAAAGTTACTCTGACCGTCGGAGTTATAGTGGAC GGAGTGATGACAGAAATTCCAGACATTCCTATGGAGAACGTAGTCCTGGCTATGACCAGA ATGATTATAAGAAAAGCCCCCGCCACTTTGAAGTTGTCGACGATAGATCTGGGAAAACAA CTCCAGTTCAAAGGTTCGAGGACCGCAGGTTTTCTGAACCACGAAAGCCAGAGACTGGGT CTCCAAATTACCAGAGAGAAGCCAATGGATCTAGTCCTCCTGTTGTACGGCCAGTGAGGG AGATATTGGGTGATGATGCTCCTCAACTTCGGATTGGTGAACCTCCAAAGCCGAATGTAG CCAGACCGATTGACCCTCCAAAACCAAATGGAGCCAGGACCATTGAACCTCCACCTCAGG CACAGAGGACAGCTACTGCCAGCAGCATTGGTTCTTCCGAGGGGATTTCGGAACAGACGA AGGCAGTAACTCCAGTCAGTTTAATTGATTTTGGTGCAGATCCCGAACCTACTGCATCTG CCCTGCCATCACAGACAGCCCCTACACCCCAGCAGCAGTCAGTTAATGCACAGCCTATTA ACACAACAGCGCCACAACATGTTCTTGAACAAGGCAGAAGTGCTCCATCAGTGAGCGGCG GTGATTGGGCATCTTTTGATGCTTTTGGCCAGCAACAACAAACACCACAATCAGGCAGCA CTGTAAATCCGCTTGAGTCTGTGCTTGCACAACTATCATTCTCTGAAACACCCTCTGCCT CCAGTACATCAGCCTTTTCAACTTCTGTTGATCAGCAAGCAAATGGAGGACAGTCATCCA TGATAGATCCATCACATTCTTCATTATTTGGTCCACCCGTTGGAATCTCAGGCAATCAGG CCTCAACAGGAATGCCCGTCCAAGGATCTGCAGTTCATCAATCTGCTGTGGCTGCCCCTA TGGGTGGTCTTCCATCTCTATTGCCTTCAAATTCTCAAGGAACAAGTGGTATTCAAGAAG CAACGTCTTCTCATGACAGCAAATCCAGTGGGCGGACAGCACTTCCAGTGGATTTCTTTA CTTCACTTTATCCATCAGCAACTCCAGCAATGCCTGGCTGGCAGAGAGCTCCCCAGTCTG GAATGGGATTTGGCATGCAGTATCCTGCCGGAATGTTGCAGGGAATGCAGTCATATCCTC AGGCAGCATTTTCTCAACCTACATATCAACAGCCTACATATCAGCAACCTATGTATCAGC AACCTACATACCAACAACCTACGTATCAACAGCCTGTATATCAGCAAAATGCATATCCCC AACCTGCGAAAGCTTCAAACCCTTTTGACCTCGGAAATGAGGCAGCTCCAATTCAAGCTC ACATGTCCCTATCTGGACCACTGGGAGCATCAGCAGGCGCTGCTAACCCAACATTAGTTG GTAACTCTAGTTTTGGAGTTCCACCTCAGCAGCCTCAGCAGATGTATCAGCCACCTGTAC ATCAAAGTATTTACTTAGTTTCTCATCATCATCTCTACACTCTTGCTCTTTATTATTATT ACTGCTACCAGTACTACTACTTTGACATGCGGTACTAATTTGTGATTCAACTTCAGACCA TTACATGATGCAGCATGTTTCAAACAACATGCCTGAGCAGCTACCTAATGGCATGCTTCC AAGGTGAGCTATACTTGTTATCAGTATATCCTGCAAGTTGAAATGTTAGTGCTATGCTTT GCATATGAGCTGAGATTAATTATTATTTTCAACTATTCTATACCACATCTTAGTCATATA TAGGTAGCAAATAGCACACCCATTAAATACGGAACTGGCACTGACTGAACTGTCAGTTCT GGCCATTGGGTCATTTTGGATGGTTGATATAAACAATTGAATGCTACCAGCTTTCGAAGC AATCCTGTGAATTATGTCATCTTCATCCTACTAGCCGCTGCAGTGGCATGGATAGTCCTT GTTTGCATCTTCACATCTGATAAGAGTGATCAAGGCTGTATGTTTATTGTGATTTTCTGG CAACACCTCCGACTTACTTGTGACATCACAGGCAACAAGGAGGGGCTGGTTCCCTCGGCG TCGGATATGATCAACAAGCTGCCCCTAGGTACTCCCAGCCAAGCACCCCACCTTCATATG GTGCTGTCGGTGGAAATCCTTTTGGGTAAAAAAGGCTTATCAAATGTGGACGTACCATGT TACCTGTTTATGGTATCTTATGTATCTTCAGACCACTGGTGTGTAGTGCCCACTGCCCAG TGAGACCAGAATGCACAAAGCCCTGGAGAAAAATTTGTTTCATATTTACTGGTCATGTGT TCTGTCACTGTAGCTCCGTGTAACTTGGTCTGGGAGGTGGAAGCGACGTGGTGCATAAGC TTCAGGAGCAGTAGTTCGGTGCTTCTAGCCCCTATTTTCTTGTATATTTGTGTTTGGTGT TCTGTATGCGTTGCCTCCGATGTATATTCACAGAGACCCTATGCCTTGTATGGTTTTTGA TTGGGATCTTTCGAGCGGCCCTATCTGATAGTGTACTTAGCTCAGAATGTTACTTTTAGT CATGCTGGGTATTCAATTTTAATGTTTATTGC
Protein Sequence (683 aa)
>BART1_0-u44239.024 683 150831_barley_pseudomolecules MASRVKEDEKNERVIRGLLKLPANKRCINCNNLGPQYVCTNFWTFVCTNCSGAHREFTHR VKSVSMAKFTAQEVTALQGGGNERAREIFFKEWDSQRNPYPDSSNTDKLRNFIKYVYVER RYTGERSSDRPPRGKDDKDEHSENRRSDGNRGGSRSPPYNESYSDRRSYSGRSDDRNSRH SYGERSPGYDQNDYKKSPRHFEVVDDRSGKTTPVQRFEDRRFSEPRKPETGSPNYQREAN GSSPPVVRPVREILGDDAPQLRIGEPPKPNVARPIDPPKPNGARTIEPPPQAQRTATASS IGSSEGISEQTKAVTPVSLIDFGADPEPTASALPSQTAPTPQQQSVNAQPINTTAPQHVL EQGRSAPSVSGGDWASFDAFGQQQQTPQSGSTVNPLESVLAQLSFSETPSASSTSAFSTS VDQQANGGQSSMIDPSHSSLFGPPVGISGNQASTGMPVQGSAVHQSAVAAPMGGLPSLLP SNSQGTSGIQEATSSHDSKSSGRTALPVDFFTSLYPSATPAMPGWQRAPQSGMGFGMQYP AGMLQGMQSYPQAAFSQPTYQQPTYQQPMYQQPTYQQPTYQQPVYQQNAYPQPAKASNPF DLGNEAAPIQAHMSLSGPLGASAGAANPTLVGNSSFGVPPQQPQQMYQPPVHQSIYLVSH HHLYTLALYYYYCYQYYYFDMRY