Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU IDPercentage overlapBART Gene DirectionHORVU Gene DirectionOverlap LengthGene Length DifferenceOverlapping Status
HORVU6Hr1G03664095.1--7689-394Containing




Transcripts from Gene BART1_0-u44239

TranscriptLength(bp)Description
BART1_0-u44239.00133633363 bp MSTRG.44239.1 MSTRG.44239
BART1_0-u44239.00233603360 bp MSTRG.44239.2 MSTRG.44239
BART1_0-u44239.00331983198 bp MSTRG.44239.3 MSTRG.44239
BART1_0-u44239.00432163216 bp MSTRG.44239.4 MSTRG.44239
BART1_0-u44239.00532843284 bp MSTRG.44239.5 MSTRG.44239
BART1_0-u44239.00631643164 bp MSTRG.44239.6 MSTRG.44239
BART1_0-u44239.00730713071 bp MSTRG.44239.7 MSTRG.44239
BART1_0-u44239.00831523152 bp MSTRG.44239.8 MSTRG.44239
BART1_0-u44239.00929652965 bp MSTRG.44239.9 MSTRG.44239
BART1_0-u44239.01024522452 bp MSTRG.44239.10 MSTRG.44239
BART1_0-u44239.01122422242 bp MSTRG.44239.11 MSTRG.44239
BART1_0-u44239.01228072807 bp MSTRG.44239.12 MSTRG.44239
BART1_0-u44239.01328392839 bp MSTRG.44239.13 MSTRG.44239
BART1_0-u44239.01427982798 bp MSTRG.44239.14 MSTRG.44239
BART1_0-u44239.01527322732 bp MSTRG.44239.15 MSTRG.44239
BART1_0-u44239.01629672967 bp MSTRG.44239.16 MSTRG.44239
BART1_0-u44239.01729812981 bp MSTRG.44239.17 MSTRG.44239
BART1_0-u44239.01830403040 bp MSTRG.44239.18 MSTRG.44239
BART1_0-u44239.01918701870 bp MSTRG.44239.19 MSTRG.44239
BART1_0-u44239.02027412741 bp MSTRG.44239.20 MSTRG.44239
BART1_0-u44239.02127702770 bp MSTRG.44239.21 MSTRG.44239
BART1_0-u44239.02226242624 bp MSTRG.44239.22 MSTRG.44239
BART1_0-u44239.02316181618 bp MSTRG.44239.23 MSTRG.44239
BART1_0-u44239.02432123212 bp MSTRG.44239.24 MSTRG.44239



Exon Structure of BART1_0-u44239


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os02g11820.2 +2 0.0 761 517/751 (69%) protein|GTPase-activating protein, putative, expressed
TAIR PP10 AT4G13350 @ ARAPORT
AT4G13350.2 @ TAIR
+2 6e-88 296 221/553 (40%) Symbols: NIG | NSP (nuclear shuttle protein)-interacting GTPase | chr4:7770170-7773321 REVERSE LENGTH=602
BRACH PP3 Bradi3g07910.1.p +2 0.0 932 586/722 (81%) pacid=32814567 transcript=Bradi3g07910.1 locus=Bradi3g07910 ID=Bradi3g07910.1.v3.1 annot-version=v3.1




GO Annotation

Generated by PANNZER

GO IDGO terms
GO:0046872metal ion binding
GO:0005096GTPase activator activity
GO:0043547positive regulation of GTPase activity



Barley PseudoMolecules GBrowse

Click here to see more tracks within GBrowse -->



grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons