- Gene BART1_0-u44239
- Gene IDBART1_0-u44239
- Location chr6H: 180781695 - 180789777
Matching HORVU genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).HORVU ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
---|---|---|---|---|---|---|
HORVU6Hr1G036640 | 95.1 | - | - | 7689 | -394 | Containing |
Transcripts from Gene BART1_0-u44239
Transcript | Length(bp) | Description |
---|---|---|
BART1_0-u44239.001 | 3363 | 3363 bp MSTRG.44239.1 MSTRG.44239 |
BART1_0-u44239.002 | 3360 | 3360 bp MSTRG.44239.2 MSTRG.44239 |
BART1_0-u44239.003 | 3198 | 3198 bp MSTRG.44239.3 MSTRG.44239 |
BART1_0-u44239.004 | 3216 | 3216 bp MSTRG.44239.4 MSTRG.44239 |
BART1_0-u44239.005 | 3284 | 3284 bp MSTRG.44239.5 MSTRG.44239 |
BART1_0-u44239.006 | 3164 | 3164 bp MSTRG.44239.6 MSTRG.44239 |
BART1_0-u44239.007 | 3071 | 3071 bp MSTRG.44239.7 MSTRG.44239 |
BART1_0-u44239.008 | 3152 | 3152 bp MSTRG.44239.8 MSTRG.44239 |
BART1_0-u44239.009 | 2965 | 2965 bp MSTRG.44239.9 MSTRG.44239 |
BART1_0-u44239.010 | 2452 | 2452 bp MSTRG.44239.10 MSTRG.44239 |
BART1_0-u44239.011 | 2242 | 2242 bp MSTRG.44239.11 MSTRG.44239 |
BART1_0-u44239.012 | 2807 | 2807 bp MSTRG.44239.12 MSTRG.44239 |
BART1_0-u44239.013 | 2839 | 2839 bp MSTRG.44239.13 MSTRG.44239 |
BART1_0-u44239.014 | 2798 | 2798 bp MSTRG.44239.14 MSTRG.44239 |
BART1_0-u44239.015 | 2732 | 2732 bp MSTRG.44239.15 MSTRG.44239 |
BART1_0-u44239.016 | 2967 | 2967 bp MSTRG.44239.16 MSTRG.44239 |
BART1_0-u44239.017 | 2981 | 2981 bp MSTRG.44239.17 MSTRG.44239 |
BART1_0-u44239.018 | 3040 | 3040 bp MSTRG.44239.18 MSTRG.44239 |
BART1_0-u44239.019 | 1870 | 1870 bp MSTRG.44239.19 MSTRG.44239 |
BART1_0-u44239.020 | 2741 | 2741 bp MSTRG.44239.20 MSTRG.44239 |
BART1_0-u44239.021 | 2770 | 2770 bp MSTRG.44239.21 MSTRG.44239 |
BART1_0-u44239.022 | 2624 | 2624 bp MSTRG.44239.22 MSTRG.44239 |
BART1_0-u44239.023 | 1618 | 1618 bp MSTRG.44239.23 MSTRG.44239 |
BART1_0-u44239.024 | 3212 | 3212 bp MSTRG.44239.24 MSTRG.44239 |
Exon Structure of BART1_0-u44239
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os02g11820.2 | +2 | 0.0 | 761 | 517/751 (69%) | protein|GTPase-activating protein, putative, expressed |
TAIR PP10 | AT4G13350 @ ARAPORT AT4G13350.2 @ TAIR |
+2 | 6e-88 | 296 | 221/553 (40%) | Symbols: NIG | NSP (nuclear shuttle protein)-interacting GTPase | chr4:7770170-7773321 REVERSE LENGTH=602 |
BRACH PP3 | Bradi3g07910.1.p | +2 | 0.0 | 932 | 586/722 (81%) | pacid=32814567 transcript=Bradi3g07910.1 locus=Bradi3g07910 ID=Bradi3g07910.1.v3.1 annot-version=v3.1 |
GO Annotation
Generated by PANNZERGO ID | GO terms |
---|---|
GO:0046872 | metal ion binding |
GO:0005096 | GTPase activator activity |
GO:0043547 | positive regulation of GTPase activity |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons