- Transcript BART1_0-u44239.023
- Transcript IDBART1_0-u44239.023
- Gene IDBART1_0-u44239
Barley RTD
Exon Structure of BART1_0-u44239.023
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr6H | 1 | 180783208 | 180781939 | - |
| chr6H | 2 | 180783571 | 180783362 | - |
| chr6H | 3 | 180783770 | 180783666 | - |
| chr6H | 4 | 180785452 | 180785420 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 5.16332 | 0.332739 | 0.555452 |
| morex | ETI | 1.24739 | 1.58656 | 0 |
| morex | LEA | 0.58843 | 0 | 0 |
| morex | EPI | 4.07671 | 5.83232 | 4.92867 |
| morex | ROO | 0 | 0.392688 | 0 |
| morex | ROO2 | 4.35056 | 5.96624 | 4.27703 |
| morex | NOD | 0.026287 | 0.943424 | 8.59971 |
| morex | RAC | 3.83507 | 6.44529 | 4.41052 |
| morex | INF1 | 1.39847 | 0.936809 | 0 |
| morex | INF2 | 0 | 0.943759 | 0 |
| morex | CAR5 | 0.750901 | 1.14734 | 0.77704 |
| morex | CAR15 | 0.211739 | 0 | 0.254026 |
| morex | LEM | 2.90736 | 3.00652 | 2.68554 |
| morex | LOD | 2.26099 | 7.05042 | 0 |
| morex | PAL | 3.77501 | 3.10294 | 2.74627 |
| morex | SEN | 1.95976 | 2.60623 | 3.63893 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | None | - | - | - | - | - |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | None | - | - | - | - | - |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1618 bp)
>BART1_0-u44239.023 1618 150831_barley_pseudomolecules GAAGAATCAAAGATAGTTGTCATCTTAACAAAGGATTTCTTTACTTCACTTTATCCATCA GCAACTCCAGCAATGCCTGGCTGGCAGAGAGCTCCCCAGTCTGGAATGGGATTTGGCATG CAGTATCCTGCCGGAATGTTGCAGGGAATGCAGTCATATCCTCAGGCAGCATTTTCTCAA CCTACATATCAACAGCCTACATATCAGCAACCTATGTATCAGCAACCTACATACCAACAA CCTACGTATCAACAGCCTGTATATCAGCAAAATGCATATCCCCAACCTGCGAAAGCTTCA AACCCTTTTGACCTCGGAAATGAGGCAGCTCCAATTCAAGCTCACATGCAGTCCCTATCT GGACCACTGGGAGCATCAGCAGGCGCTGCTAACCCAACATTAGTTGGTAACTCTAGTTTT GGAGTTCCACCTCAGCAGCCTCAGCAGATGTATCAGCCACCTGTACATCAAAGTATTTAC TTAGTTTCTCATCATCATCTCTACACTCTTGCTCTTTATTATTATTACTGCTACCAGTAC TACTACTTTGACATGCGGTACTAATTTGTGATTCAACTTCAGACCATTACATGATGCAGC ATGTTTCAAACAACATGCCTGAGCAGCTACCTAATGGCATGCTTCCAAGGTGAGCTATAC TTGTTATCAGTATATCCTGCAAGTTGAAATGTTAGTGCTATGCTTTGCATATGAGCTGAG ATTAATTATTATTTTCAACTATTCTATACCACATCTTAGTCATATATAGGTAGCAAATAG CACACCCATTAAATACGGAACTGGCACTGACTGAACTGTCAGTTCTGGCCATTGGGTCAT TTTGGATGGTTGATATAAACAATTGAATGCTACCAGCTTTCGAAGCAATCCTGTGAATTA TGTCATCTTCATCCTACTAGCCGCTGCAGTGGCATGGATAGTCCTTGTTTGCATCTTCAC ATCTGATAAGAGTGATCAAGGCTGTATGTTTATTGTGATTTTCTGGCAACACCTCCGACT TACTTGTGACATCACAGGCAACAAGGAGGGGCTGGTTCCCTCGGCGTCGGATATGATCAA CAAGCTGCCCCTAGGTACTCCCAGCCAAGCACCCCACCTTCATATGGTGCTGTCGGTGGA AATCCTTTTGGGTAAAAAAGGCTTATCAAATGTGGACGTACCATGTTACCTGTTTATGGT ATCTTATGTATCTTCAGACCACTGGTGTGTAGTGCCCACTGCCCAGTGAGACCAGAATGC ACAAAGCCCTGGAGAAAAATTTGTTTCATATTTACTGGTCATGTGTTCTGTCACTGTAGC TCCGTGTAACTTGGTCTGGGAGGTGGAAGCGACGTGGTGCATAAGCTTCAGGAGCAGTAG TTCGGTGCTTCTAGCCCCTATTTTCTTGTATATTTGTGTTTGGTGTTCTGTATGCGTTGC CTCCGATGTATATTCACAGAGACCCTATGCCTTGTATGGTTTTTGATTGGGATCTTTCGA GCGGCCCTATCTGATAGTGTACTTAGCTCAGAATGTTACTTTTAGTCATGCTGGGTATTC AATTTTAATGTTTATTGCAATGTCGGACTGAAGGTTGTATAACTGTGGTTAATCAGTT
Protein Sequence (163 aa)
>BART1_0-u44239.023 163 150831_barley_pseudomolecules MPGWQRAPQSGMGFGMQYPAGMLQGMQSYPQAAFSQPTYQQPTYQQPMYQQPTYQQPTYQ QPVYQQNAYPQPAKASNPFDLGNEAAPIQAHMQSLSGPLGASAGAANPTLVGNSSFGVPP QQPQQMYQPPVHQSIYLVSHHHLYTLALYYYYCYQYYYFDMRY