- Transcript BART1_0-u44239.016
- Transcript IDBART1_0-u44239.016
- Gene IDBART1_0-u44239
Barley RTD
Exon Structure of BART1_0-u44239.016
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr6H | 1 | 180782519 | 180781903 | - |
| chr6H | 2 | 180782974 | 180782908 | - |
| chr6H | 3 | 180783205 | 180783085 | - |
| chr6H | 4 | 180783571 | 180783362 | - |
| chr6H | 5 | 180783770 | 180783666 | - |
| chr6H | 6 | 180786158 | 180785988 | - |
| chr6H | 7 | 180786706 | 180786233 | - |
| chr6H | 8 | 180787333 | 180786857 | - |
| chr6H | 9 | 180787544 | 180787451 | - |
| chr6H | 10 | 180787695 | 180787634 | - |
| chr6H | 11 | 180787865 | 180787778 | - |
| chr6H | 12 | 180788070 | 180788009 | - |
| chr6H | 13 | 180789163 | 180789050 | - |
| chr6H | 14 | 180789570 | 180789266 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0 | 0 |
| morex | ETI | 0 | 0 | 0 |
| morex | LEA | 0 | 0 | 0 |
| morex | EPI | 0 | 0 | 0 |
| morex | ROO | 0 | 0 | 0 |
| morex | ROO2 | 0 | 0 | 0 |
| morex | NOD | 0 | 0 | 0 |
| morex | RAC | 0 | 0 | 0 |
| morex | INF1 | 0 | 0 | 0 |
| morex | INF2 | 0 | 0 | 0 |
| morex | CAR5 | 0 | 0 | 0 |
| morex | CAR15 | 0 | 0 | 0 |
| morex | LEM | 0 | 0 | 0 |
| morex | LOD | 0 | 0 | 0 |
| morex | PAL | 0 | 0 | 0 |
| morex | SEN | 0 | 0 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os02g11820.2 | +3 | 0.0 | 753 | 507/752 (67%) | protein|GTPase-activating protein, putative, expressed |
| TAIR PP10 | AT4G13350 @ ARAPORT AT4G13350.2 @ TAIR |
+3 | 8e-88 | 293 | 219/554 (40%) | Symbols: NIG | NSP (nuclear shuttle protein)-interacting GTPase | chr4:7770170-7773321 REVERSE LENGTH=602 |
| BRACH PP3 | Bradi3g07910.1.p | +3 | 0.0 | 932 | 597/722 (83%) | pacid=32814567 transcript=Bradi3g07910.1 locus=Bradi3g07910 ID=Bradi3g07910.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2967 bp)
>BART1_0-u44239.016 2967 150831_barley_pseudomolecules CGCGGTCCCGCCGCCCGGCGACCGGCTTCAGCCGGTCCACACCCGCAAGTTGACCGCCAG CCGTCGCTCTGCCTTCTTCTCCTCTGCCGGTAAATAAAACCCCACGACGAGGGAAAAACT TTTTTTCTACTAACACGCGCAGCCCCAGCGAAGCAGCTCAGCGGCGACAACAAAAGAGGG GACCCTTTCCGTTGGTCGCCACCGCCAACTCGCCTCGGCCCCCGCTCCTCCGCACGCCCG CGCGGGATCTCGCGCTTGCTCCCCCCCGAGGAGGGCTCTCCCGGTGAGGGCTCGTCGATC GACCGGGTTTGCGGCGGGCGATGGCGAGCCGGGTGAAGGAGGACGAGAAGAACGAGCGGG TAATACGCGGGCTGCTCAAGCTGCCCGCAAACAAGAGGTGCATCAACTGCAACAATTTGG GACCACAATATGTATGCACAAATTTCTGGACCTTCGTTTGTACCAATTGCAGTGGAGCAC ACCGAGAGTTCACGCACCGGGTGAAATCTGTTTCCATGGCTAAATTTACTGCACAAGAAG TCACTGCTCTACAAGGAGGAGGAAATGAGCGTGCTAGAGAAATATTTTTCAAGGAATGGG ATTCTCAGCGCAATCCATACCCTGACAGCAGTAATACGGACAAATTGAGGAATTTCATCA AATATGTTTACGTGGAACGGCGATATACAGGAGAAAGAAGCTCTGATAGACCACCGAGGG GAAAGGACGATAAGGATGAACATAGCGAAAATAGAAGATCTGATGGAAATCGGGGTGGTT CAAGAAGTCCACCATATAATGAAAGTTACTCTGACCGTCGGAGTTATAGTGGACGGAGTG ATGACAGAAATTCCAGACATTCCTATGGAGAACGTAGTCCTGGCTATGACCAGAATGATT ATAAGAAAAGCCCCCGCCACTTTGAAGTTGTCGACGATAGATCTGGGAAAACAACTCCAG TTCAAAGGTTCGAGGACCGCAGGTTTTCTGAACCACGAAAGCCAGAGACTGGGTCTCCAA ATTACCAGAGAGAAGCCAATGGATCTAGTCCTCCTGTTGTACGGCCAGTGAGGGAGATAT TGGGTGATGATGCTCCTCAACTTCGGATTGGTGAACCTCCAAAGCCGAATGTAGCCAGAC CGATTGACCCTCCAAAACCAAATGGAGCCAGGACCATTGAACCTCCACCTCAGGCACAGG TTAGGACAGCTACTGCCAGCAGCATTGGTTCTTCCGAGGGGATTTCGGAACAGACGAAGG CAGTAACTCCAGTCAGTTTAATTGATTTTGGTGCAGATCCCGAACCTACTGCATCTGCCC TGCCATCACAGACAGCCCCTACACCCCAGCAGCAGTCAGTTAATGCACAGCCTATTAACA CAACAGCGCCACAACATGTTCTTGAACAAGGCAGAAGTGCTCCATCAGTGAGCGGCGGTG ATTGGGCATCTTTTGATGCTTTTGGCCAGCAACAACAAACACCACAATCAGGCAGCACTG TAAATCCGCTTGAGTCTGTGCTTGCACAACTATCATTCTCTGAAACACCCTCTGCCTCCA GTACATCAGCCTTTTCAACTTCTGTTGATCAGCAAGCAAATGGAGGACAGTCATCCATGA TAGATCCATCACATTCTTCATTATTTGGTCCACCCGTTGGAATCTCAGGCAATCAGGCCT CAACAGGAATGCCCGTCCAAGGATCTGCAGTTCATCAATCTGCTGTGGCTGCCCCTATGG GTGGTCTTCCATCTCTATTGCCTTCAAATTCTCAAGGAACAAGTGGTATTCAAGAAGCAA CGTCTTCTCATGACAGCAAATCCAGTGGGCGGACAGCACTTCCAGTGGATTTCTTTACTT CACTTTATCCATCAGCAACTCCAGCAATGCCTGGCTGGCAGAGAGCTCCCCAGTCTGGAA TGGGATTTGGCATGCAGTATCCTGCCGGAATGTTGCAGGGAATGCAGTCATATCCTCAGG CAGCATTTTCTCAACCTACATATCAACAGCCTACATATCAGCAACCTATGTATCAGCAAC CTACATACCAACAACCTACGTATCAACAGCCTGTATATCAGCAAAATGCATATCCCCAAC CTGCGAAAGCTTCAAACCCTTTTGACCTCGGAAATGAGGCAGCTCCAATTCAAGCTCACA TGTCCCTATCTGGACCACTGGGAGCATCAGCAGGCGCTGCTAACCCAACATTAGTTGGTA ACTCTAGTTTTGGAGTTCCACCTCAGCAGCCTCAGCAGATGTATCAGCCACCTGTACATC AAAACCATTACATGATGCAGCATGTTTCAAACAACATGCCTGAGCAGCTACCTAATGGCA TGCTTCCAAGGCAACAAGGAGGGGCTGGTTCCCTCGGCGTCGGATATGATCAACAAGCTG CCCCTAGGTACTCCCAGCCAAGCACCCCACCTTCATATGGTGCTGTCGGTGGAAATCCTT TTGGGTAAAAAAGGCTTATCAAATGTGGACGTACCATGTTACCTGTTTATGGTATCTTAT GTATCTTCAGACCACTGGTGTGTAGTGCCCACTGCCCAGTGAGACCAGAATGCACAAAGC CCTGGAGAAAAATTTGTTTCATATTTACTGGTCATGTGTTCTGTCACTGTAGCTCCGTGT AACTTGGTCTGGGAGGTGGAAGCGACGTGGTGCATAAGCTTCAGGAGCAGTAGTTCGGTG CTTCTAGCCCCTATTTTCTTGTATATTTGTGTTTGGTGTTCTGTATGCGTTGCCTCCGAT GTATATTCACAGAGACCCTATGCCTTGTATGGTTTTTGATTGGGATCTTTCGAGCGGCCC TATCTGATAGTGTACTTAGCTCAGAATGTTACTTTTAGTCATGCTGGGTATTCAATTTTA ATGTTTATTGCAATGTCGGACTGAAGGTTGTATAACTGTGGTTAATCAGTTGTTTTGGTC TCACGCTATTGCATTACGGATCATTTG
Protein Sequence (715 aa)
>BART1_0-u44239.016 715 150831_barley_pseudomolecules MASRVKEDEKNERVIRGLLKLPANKRCINCNNLGPQYVCTNFWTFVCTNCSGAHREFTHR VKSVSMAKFTAQEVTALQGGGNERAREIFFKEWDSQRNPYPDSSNTDKLRNFIKYVYVER RYTGERSSDRPPRGKDDKDEHSENRRSDGNRGGSRSPPYNESYSDRRSYSGRSDDRNSRH SYGERSPGYDQNDYKKSPRHFEVVDDRSGKTTPVQRFEDRRFSEPRKPETGSPNYQREAN GSSPPVVRPVREILGDDAPQLRIGEPPKPNVARPIDPPKPNGARTIEPPPQAQVRTATAS SIGSSEGISEQTKAVTPVSLIDFGADPEPTASALPSQTAPTPQQQSVNAQPINTTAPQHV LEQGRSAPSVSGGDWASFDAFGQQQQTPQSGSTVNPLESVLAQLSFSETPSASSTSAFST SVDQQANGGQSSMIDPSHSSLFGPPVGISGNQASTGMPVQGSAVHQSAVAAPMGGLPSLL PSNSQGTSGIQEATSSHDSKSSGRTALPVDFFTSLYPSATPAMPGWQRAPQSGMGFGMQY PAGMLQGMQSYPQAAFSQPTYQQPTYQQPMYQQPTYQQPTYQQPVYQQNAYPQPAKASNP FDLGNEAAPIQAHMSLSGPLGASAGAANPTLVGNSSFGVPPQQPQQMYQPPVHQNHYMMQ HVSNNMPEQLPNGMLPRQQGGAGSLGVGYDQQAAPRYSQPSTPPSYGAVGGNPFG