Transcript Data
Barley RTD
Links



Exon Structure of BART1_0-u44239.014

ChromosomeExonStartStopDirection
chr6H1180782519180781901-
chr6H2180782974180782908-
chr6H3180783208180783085-
chr6H4180783565180783362-
chr6H5180783770180783666-
chr6H6180786158180785988-
chr6H7180786706180786233-
chr6H8180787333180786860-
chr6H9180787544180787451-
chr6H10180787695180787634-
chr6H11180787865180787778-
chr6H12180788070180788009-
chr6H13180789166180789050-
chr6H14180789424180789288-


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Salmon TPM Values: sixteensamplesmorex

These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials


SampleTreatmentRep 1Rep 2Rep 3
morexEMB0.000041970111.17215.2507
morexETI4.878316.0051618.2071
morexLEA3.156943.276881.91758
morexEPI0.2141246.590580.140355
morexROO0.00000010274713.17772.47757
morexROO212.79794.1141612.1492
morexNOD11.79884.222079.65652
morexRAC4.2840619.843822.3504
morexINF114.759917.670.0372105
morexINF211.816919.68117.25871
morexCAR510.618817.969412.3354
morexCAR153.389446.364946.85447
morexLEM11.58417.9927312.4575
morexLOD20.502417.783218.4973
morexPAL25.414922.266617.6087
morexSEN2.624955.369941.29389



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os02g11820.2 +3 0.0 768 517/749 (69%) protein|GTPase-activating protein, putative, expressed
TAIR PP10 AT4G13350 @ ARAPORT
AT4G13350.2 @ TAIR		 +3 3e-89 296 223/566 (39%) Symbols: NIG | NSP (nuclear shuttle protein)-interacting GTPase | chr4:7770170-7773321 REVERSE LENGTH=602
BRACH PP3 Bradi3g07910.1.p +3 0.0 929 583/720 (81%) pacid=32814567 transcript=Bradi3g07910.1 locus=Bradi3g07910 ID=Bradi3g07910.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

Click here to see more tracks within GBrowse -->



grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (2798 bp)

>BART1_0-u44239.014 2798 150831_barley_pseudomolecules
AGCGAAGCAGCTCAGCGGCGACAACAAAAGAGGGGACCCTTTCCGTTGGTCGCCACCGCC
AACTCGCCTCGGCCCCCGCTCCTCCGCACGCCCGCGCGGGATCTCGCGCTTGCTCCCCCC
CGAGGAGGGCTCTCCCGCAGGGTTTGCGGCGGGCGATGGCGAGCCGGGTGAAGGAGGACG
AGAAGAACGAGCGGGTAATACGCGGGCTGCTCAAGCTGCCCGCAAACAAGAGGTGCATCA
ACTGCAACAATTTGGGACCACAATATGTATGCACAAATTTCTGGACCTTCGTTTGTACCA
ATTGCAGTGGAGCACACCGAGAGTTCACGCACCGGGTGAAATCTGTTTCCATGGCTAAAT
TTACTGCACAAGAAGTCACTGCTCTACAAGGAGGAGGAAATGAGCGTGCTAGAGAAATAT
TTTTCAAGGAATGGGATTCTCAGCGCAATCCATACCCTGACAGCAGTAATACGGACAAAT
TGAGGAATTTCATCAAATATGTTTACGTGGAACGGCGATATACAGGAGAAAGAAGCTCTG
ATAGACCACCGAGGGGAAAGGACGATAAGGATGAACATAGCGAAAATAGAAGATCTGATG
GAAATCGGGGTGGTTCAAGAAGTCCACCATATAATGAAAGTTACTCTGACCGTCGGAGTT
ATAGTGGACGGAGTGATGACAGAAATTCCAGACATTCCTATGGAGAACGTAGTCCTGGCT
ATGACCAGAATGATTATAAGAAAAGCCCCCGCCACTTTGAAGTTGTCGACGATAGATCTG
GGAAAACAACTCCAGTTCAAAGGTTCGAGGACCGCAGGTTTTCTGAACCACGAAAGCCAG
AGACTGGGTCTCCAAATTACCAGAGAGAAGCCAATGGATCTAGTCCTCCTGTTGTACGGC
CAGTGAGGGAGATATTGGGTGATGATGCTCCTCAACTTCGGATTGGTGAACCTCCAAAGC
CGAATGTAGCCAGACCGATTGACCCTCCAAAACCAAATGGAGCCAGGACCATTGAACCTC
CACCTCAGGCACAGAGGACAGCTACTGCCAGCAGCATTGGTTCTTCCGAGGGGATTTCGG
AACAGACGAAGGCAGTAACTCCAGTCAGTTTAATTGATTTTGGTGCAGATCCCGAACCTA
CTGCATCTGCCCTGCCATCACAGACAGCCCCTACACCCCAGCAGCAGTCAGTTAATGCAC
AGCCTATTAACACAACAGCGCCACAACATGTTCTTGAACAAGGCAGAAGTGCTCCATCAG
TGAGCGGCGGTGATTGGGCATCTTTTGATGCTTTTGGCCAGCAACAACAAACACCACAAT
CAGGCAGCACTGTAAATCCGCTTGAGTCTGTGCTTGCACAACTATCATTCTCTGAAACAC
CCTCTGCCTCCAGTACATCAGCCTTTTCAACTTCTGTTGATCAGCAAGCAAATGGAGGAC
AGTCATCCATGATAGATCCATCACATTCTTCATTATTTGGTCCACCCGTTGGAATCTCAG
GCAATCAGGCCTCAACAGGAATGCCCGTCCAAGGATCTGCAGTTCATCAATCTGCTGTGG
CTGCCCCTATGGGTGGTCTTCCATCTCTATTGCCTTCAAATTCTCAAGGAACAAGTGGTA
TTCAAGAAGCAACGTCTTCTCATGACAGCAAATCCAGTGGGCGGACAGCACTTCCAGTGG
ATTTCTTTACTTCACTTTATCCATCAGCAACTCCAGCAATGCCTGGCTGGCAGAGAGCTC
CCCAGTCTGGAATGGGATTTGGCATGCAGTATCCTGCCGGAATGGGAATGCAGTCATATC
CTCAGGCAGCATTTTCTCAACCTACATATCAACAGCCTACATATCAGCAACCTATGTATC
AGCAACCTACATACCAACAACCTACGTATCAACAGCCTGTATATCAGCAAAATGCATATC
CCCAACCTGCGAAAGCTTCAAACCCTTTTGACCTCGGAAATGAGGCAGCTCCAATTCAAG
CTCACATGCAGTCCCTATCTGGACCACTGGGAGCATCAGCAGGCGCTGCTAACCCAACAT
TAGTTGGTAACTCTAGTTTTGGAGTTCCACCTCAGCAGCCTCAGCAGATGTATCAGCCAC
CTGTACATCAAAACCATTACATGATGCAGCATGTTTCAAACAACATGCCTGAGCAGCTAC
CTAATGGCATGCTTCCAAGGCAACAAGGAGGGGCTGGTTCCCTCGGCGTCGGATATGATC
AACAAGCTGCCCCTAGGTACTCCCAGCCAAGCACCCCACCTTCATATGGTGCTGTCGGTG
GAAATCCTTTTGGGTAAAAAAGGCTTATCAAATGTGGACGTACCATGTTACCTGTTTATG
GTATCTTATGTATCTTCAGACCACTGGTGTGTAGTGCCCACTGCCCAGTGAGACCAGAAT
GCACAAAGCCCTGGAGAAAAATTTGTTTCATATTTACTGGTCATGTGTTCTGTCACTGTA
GCTCCGTGTAACTTGGTCTGGGAGGTGGAAGCGACGTGGTGCATAAGCTTCAGGAGCAGT
AGTTCGGTGCTTCTAGCCCCTATTTTCTTGTATATTTGTGTTTGGTGTTCTGTATGCGTT
GCCTCCGATGTATATTCACAGAGACCCTATGCCTTGTATGGTTTTTGATTGGGATCTTTC
GAGCGGCCCTATCTGATAGTGTACTTAGCTCAGAATGTTACTTTTAGTCATGCTGGGTAT
TCAATTTTAATGTTTATTGCAATGTCGGACTGAAGGTTGTATAACTGTGGTTAATCAGTT
GTTTTGGTCTCACGCTATTGCATTACGGATCATTTGGT



Protein Sequence (713 aa)

>BART1_0-u44239.014 713 150831_barley_pseudomolecules
MASRVKEDEKNERVIRGLLKLPANKRCINCNNLGPQYVCTNFWTFVCTNCSGAHREFTHR
VKSVSMAKFTAQEVTALQGGGNERAREIFFKEWDSQRNPYPDSSNTDKLRNFIKYVYVER
RYTGERSSDRPPRGKDDKDEHSENRRSDGNRGGSRSPPYNESYSDRRSYSGRSDDRNSRH
SYGERSPGYDQNDYKKSPRHFEVVDDRSGKTTPVQRFEDRRFSEPRKPETGSPNYQREAN
GSSPPVVRPVREILGDDAPQLRIGEPPKPNVARPIDPPKPNGARTIEPPPQAQRTATASS
IGSSEGISEQTKAVTPVSLIDFGADPEPTASALPSQTAPTPQQQSVNAQPINTTAPQHVL
EQGRSAPSVSGGDWASFDAFGQQQQTPQSGSTVNPLESVLAQLSFSETPSASSTSAFSTS
VDQQANGGQSSMIDPSHSSLFGPPVGISGNQASTGMPVQGSAVHQSAVAAPMGGLPSLLP
SNSQGTSGIQEATSSHDSKSSGRTALPVDFFTSLYPSATPAMPGWQRAPQSGMGFGMQYP
AGMGMQSYPQAAFSQPTYQQPTYQQPMYQQPTYQQPTYQQPVYQQNAYPQPAKASNPFDL
GNEAAPIQAHMQSLSGPLGASAGAANPTLVGNSSFGVPPQQPQQMYQPPVHQNHYMMQHV
SNNMPEQLPNGMLPRQQGGAGSLGVGYDQQAAPRYSQPSTPPSYGAVGGNPFG