- Transcript BART1_0-u44239.011
- Transcript IDBART1_0-u44239.011
- Gene IDBART1_0-u44239
Barley RTD
Exon Structure of BART1_0-u44239.011
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr6H | 1 | 180782519 | 180781900 | - |
| chr6H | 2 | 180782974 | 180782908 | - |
| chr6H | 3 | 180783208 | 180783085 | - |
| chr6H | 4 | 180783571 | 180783362 | - |
| chr6H | 5 | 180783770 | 180783666 | - |
| chr6H | 6 | 180786148 | 180785988 | - |
| chr6H | 7 | 180786706 | 180786233 | - |
| chr6H | 8 | 180787337 | 180786857 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0 | 0 |
| morex | ETI | 0 | 0 | 0 |
| morex | LEA | 0 | 0.459861 | 0 |
| morex | EPI | 0 | 0 | 0.974245 |
| morex | ROO | 0.000000152727 | 0.275375 | 0.446512 |
| morex | ROO2 | 0 | 0 | 0 |
| morex | NOD | 0 | 0 | 0 |
| morex | RAC | 0 | 0 | 0 |
| morex | INF1 | 0 | 0 | 0 |
| morex | INF2 | 0 | 0 | 0 |
| morex | CAR5 | 0 | 1.19755 | 0.950699 |
| morex | CAR15 | 0 | 0 | 0 |
| morex | LEM | 0 | 0 | 0.166037 |
| morex | LOD | 0 | 0 | 0 |
| morex | PAL | 0 | 0 | 0 |
| morex | SEN | 0 | 0 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os02g11820.2 | +2 | 5e-129 | 251 | 237/353 (67%) | protein|GTPase-activating protein, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi3g07910.1.p | +2 | 6e-179 | 356 | 267/322 (83%) | pacid=32814567 transcript=Bradi3g07910.1 locus=Bradi3g07910 ID=Bradi3g07910.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2242 bp)
>BART1_0-u44239.011 2242 150831_barley_pseudomolecules TCAGGACGATAAGGATGAACATAGCGAAAATAGAAGATCTGATGGAAATCGGGGTGGTTC AAGAAGTCCACCATATAATGAAAGTTACTCTGACCGTCGGAGTTATAGTGGACGGAGTGA TGACAGAAATTCCAGACATTCCTATGGAGAACGTAGTCCTGGCTATGACCAGAATGATTA TAAGAAAAGCCCCCGCCACTTTGAAGTTGTCGACGATAGATCTGGGAAAACAACTCCAGT TCAAAGGTTCGAGGACCGCAGGTTTTCTGAACCACGAAAGCCAGAGACTGGGTCTCCAAA TTACCAGAGAGAAGCCAATGGATCTAGTCCTCCTGTTGTACGGCCAGTGAGGGAGATATT GGGTGATGATGCTCCTCAACTTCGGATTGGTGAACCTCCAAAGCCGAATGTAGCCAGACC GATTGACCCTCCAAAACCAAATGGAGCCAGGACCATTGAACCTCCACCTCAGGCACAGGT TAGGACAGCTACTGCCAGCAGCATTGGTTCTTCCGAGGGGATTTCGGAACAGACGAAGGC AGTAACTCCAGTCAGTTTAATTGATTTTGGTGCAGATCCCGAACCTACTGCATCTGCCCT GCCATCACAGACAGCCCCTACACCCCAGCAGCAGTCAGTTAATGCACAGCCTATTAACAC AACAGCGCCACAACATGTTCTTGAACAAGGCAGAAGTGCTCCATCAGTGAGCGGCGGTGA TTGGGCATCTTTTGATGCTTTTGGCCAGCAACAACAAACACCACAATCAGGCAGCACTGT AAATCCGCTTGAGTCTGTGCTTGCACAACTATCATTCTCTGAAACACCCTCTGCCTCCAG TACATCAGCCTTTTCAACTTCTGTTGATCAGCAAGCAAATGGAGGACAGTCATCCATGAT AGATCCATCACATTCTTCATTATTTGGTCCACCCGTTGGAATCTCAGGCAATCAGGAATG CCCGTCCAAGGATCTGCAGTTCATCAATCTGCTGTGGCTGCCCCTATGGGTGGTCTTCCA TCTCTATTGCCTTCAAATTCTCAAGGAACAAGTGGTATTCAAGAAGCAACGTCTTCTCAT GACAGCAAATCCAGTGGGCGGACAGCACTTCCAGTGGATTTCTTTACTTCACTTTATCCA TCAGCAACTCCAGCAATGCCTGGCTGGCAGAGAGCTCCCCAGTCTGGAATGGGATTTGGC ATGCAGTATCCTGCCGGAATGTTGCAGGGAATGCAGTCATATCCTCAGGCAGCATTTTCT CAACCTACATATCAACAGCCTACATATCAGCAACCTATGTATCAGCAACCTACATACCAA CAACCTACGTATCAACAGCCTGTATATCAGCAAAATGCATATCCCCAACCTGCGAAAGCT TCAAACCCTTTTGACCTCGGAAATGAGGCAGCTCCAATTCAAGCTCACATGCAGTCCCTA TCTGGACCACTGGGAGCATCAGCAGGCGCTGCTAACCCAACATTAGTTGGTAACTCTAGT TTTGGAGTTCCACCTCAGCAGCCTCAGCAGATGTATCAGCCACCTGTACATCAAAACCAT TACATGATGCAGCATGTTTCAAACAACATGCCTGAGCAGCTACCTAATGGCATGCTTCCA AGGCAACAAGGAGGGGCTGGTTCCCTCGGCGTCGGATATGATCAACAAGCTGCCCCTAGG TACTCCCAGCCAAGCACCCCACCTTCATATGGTGCTGTCGGTGGAAATCCTTTTGGGTAA AAAAGGCTTATCAAATGTGGACGTACCATGTTACCTGTTTATGGTATCTTATGTATCTTC AGACCACTGGTGTGTAGTGCCCACTGCCCAGTGAGACCAGAATGCACAAAGCCCTGGAGA AAAATTTGTTTCATATTTACTGGTCATGTGTTCTGTCACTGTAGCTCCGTGTAACTTGGT CTGGGAGGTGGAAGCGACGTGGTGCATAAGCTTCAGGAGCAGTAGTTCGGTGCTTCTAGC CCCTATTTTCTTGTATATTTGTGTTTGGTGTTCTGTATGCGTTGCCTCCGATGTATATTC ACAGAGACCCTATGCCTTGTATGGTTTTTGATTGGGATCTTTCGAGCGGCCCTATCTGAT AGTGTACTTAGCTCAGAATGTTACTTTTAGTCATGCTGGGTATTCAATTTTAATGTTTAT TGCAATGTCGGACTGAAGGTTGTATAACTGTGGTTAATCAGTTGTTTTGGTCTCACGCTA TTGCATTACGGATCATTTGGTG
Protein Sequence (494 aa)
>BART1_0-u44239.011 494 150831_barley_pseudomolecules QDDKDEHSENRRSDGNRGGSRSPPYNESYSDRRSYSGRSDDRNSRHSYGERSPGYDQNDY KKSPRHFEVVDDRSGKTTPVQRFEDRRFSEPRKPETGSPNYQREANGSSPPVVRPVREIL GDDAPQLRIGEPPKPNVARPIDPPKPNGARTIEPPPQAQVRTATASSIGSSEGISEQTKA VTPVSLIDFGADPEPTASALPSQTAPTPQQQSVNAQPINTTAPQHVLEQGRSAPSVSGGD WASFDAFGQQQQTPQSGSTVNPLESVLAQLSFSETPSASSTSAFSTSVDQQANGGQSSMI DPSHSSLFGPPVGISGNQECPSKDLQFINLLWLPLWVVFHLYCLQILKEQVVFKKQRLLM TANPVGGQHFQWISLLHFIHQQLQQCLAGRELPSLEWDLACSILPECCRECSHILRQHFL NLHINSLHISNLCISNLHTNNLRINSLYISKMHIPNLRKLQTLLTSEMRQLQFKLTCSPY LDHWEHQQALLTQH