- Transcript BART1_0-u44239.003
- Transcript IDBART1_0-u44239.003
- Gene IDBART1_0-u44239
Barley RTD
Exon Structure of BART1_0-u44239.003
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr6H | 1 | 180782519 | 180781713 | - |
| chr6H | 2 | 180782974 | 180782908 | - |
| chr6H | 3 | 180783205 | 180783085 | - |
| chr6H | 4 | 180783571 | 180783362 | - |
| chr6H | 5 | 180783770 | 180783666 | - |
| chr6H | 6 | 180786158 | 180785988 | - |
| chr6H | 7 | 180786706 | 180786233 | - |
| chr6H | 8 | 180787333 | 180786860 | - |
| chr6H | 9 | 180787544 | 180787451 | - |
| chr6H | 10 | 180787695 | 180787634 | - |
| chr6H | 11 | 180787865 | 180787778 | - |
| chr6H | 12 | 180788070 | 180788009 | - |
| chr6H | 13 | 180789163 | 180789050 | - |
| chr6H | 14 | 180789636 | 180789288 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0 | 0 |
| morex | ETI | 0 | 0 | 0 |
| morex | LEA | 0 | 0 | 0 |
| morex | EPI | 0 | 0 | 0.263328 |
| morex | ROO | 0.0000000012208 | 0 | 0.0000544928 |
| morex | ROO2 | 1.64698 | 0.816135 | 0.00000000154336 |
| morex | NOD | 0 | 0.00000530136 | 0 |
| morex | RAC | 0 | 0 | 0.488778 |
| morex | INF1 | 0 | 0 | 0 |
| morex | INF2 | 0.000164678 | 0 | 0 |
| morex | CAR5 | 0.00061256 | 0.000000000417236 | 0.000000180666 |
| morex | CAR15 | 0.0000535821 | 0.335471 | 1.3122 |
| morex | LEM | 0 | 0 | 0 |
| morex | LOD | 0.562269 | 0 | 0.000000000259184 |
| morex | PAL | 0 | 0.0000013521 | 0.919471 |
| morex | SEN | 0 | 0 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os02g11820.2 | +2 | 0.0 | 757 | 507/751 (68%) | protein|GTPase-activating protein, putative, expressed |
| TAIR PP10 | AT4G13350 @ ARAPORT AT4G13350.2 @ TAIR |
+2 | 2e-88 | 296 | 219/553 (40%) | Symbols: NIG | NSP (nuclear shuttle protein)-interacting GTPase | chr4:7770170-7773321 REVERSE LENGTH=602 |
| BRACH PP3 | Bradi3g07910.1.p | +2 | 0.0 | 937 | 597/721 (83%) | pacid=32814567 transcript=Bradi3g07910.1 locus=Bradi3g07910 ID=Bradi3g07910.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3198 bp)
>BART1_0-u44239.003 3198 150831_barley_pseudomolecules CGGGCCCCATAAATCCCCGGCCACATCGCCCCTCTGGATTCTAGACTAGAAAGACCGCCT CCCTCCCGCGGTCCCGCCGCCCGGCGACCGGCTTCAGCCGGTCCACACCCGCAAGTTGAC CGCCAGCCGTCGCTCTGCCTTCTTCTCCTCTGCCGGTAAATAAAACCCCACGACGAGGGA AAAACTTTTTTTCTACTAACACGCGCAGCCCCAGCGAAGCAGCTCAGCGGCGACAACAAA AGAGGGGACCCTTTCCGTTGGTCGCCACCGCCAACTCGCCTCGGCCCCCGCTCCTCCGCA CGCCCGCGCGGGATCTCGCGCTTGCTCCCCCCCGAGGAGGGCTCTCCCGGGTTTGCGGCG GGCGATGGCGAGCCGGGTGAAGGAGGACGAGAAGAACGAGCGGGTAATACGCGGGCTGCT CAAGCTGCCCGCAAACAAGAGGTGCATCAACTGCAACAATTTGGGACCACAATATGTATG CACAAATTTCTGGACCTTCGTTTGTACCAATTGCAGTGGAGCACACCGAGAGTTCACGCA CCGGGTGAAATCTGTTTCCATGGCTAAATTTACTGCACAAGAAGTCACTGCTCTACAAGG AGGAGGAAATGAGCGTGCTAGAGAAATATTTTTCAAGGAATGGGATTCTCAGCGCAATCC ATACCCTGACAGCAGTAATACGGACAAATTGAGGAATTTCATCAAATATGTTTACGTGGA ACGGCGATATACAGGAGAAAGAAGCTCTGATAGACCACCGAGGGGAAAGGACGATAAGGA TGAACATAGCGAAAATAGAAGATCTGATGGAAATCGGGGTGGTTCAAGAAGTCCACCATA TAATGAAAGTTACTCTGACCGTCGGAGTTATAGTGGACGGAGTGATGACAGAAATTCCAG ACATTCCTATGGAGAACGTAGTCCTGGCTATGACCAGAATGATTATAAGAAAAGCCCCCG CCACTTTGAAGTTGTCGACGATAGATCTGGGAAAACAACTCCAGTTCAAAGGTTCGAGGA CCGCAGGTTTTCTGAACCACGAAAGCCAGAGACTGGGTCTCCAAATTACCAGAGAGAAGC CAATGGATCTAGTCCTCCTGTTGTACGGCCAGTGAGGGAGATATTGGGTGATGATGCTCC TCAACTTCGGATTGGTGAACCTCCAAAGCCGAATGTAGCCAGACCGATTGACCCTCCAAA ACCAAATGGAGCCAGGACCATTGAACCTCCACCTCAGGCACAGAGGACAGCTACTGCCAG CAGCATTGGTTCTTCCGAGGGGATTTCGGAACAGACGAAGGCAGTAACTCCAGTCAGTTT AATTGATTTTGGTGCAGATCCCGAACCTACTGCATCTGCCCTGCCATCACAGACAGCCCC TACACCCCAGCAGCAGTCAGTTAATGCACAGCCTATTAACACAACAGCGCCACAACATGT TCTTGAACAAGGCAGAAGTGCTCCATCAGTGAGCGGCGGTGATTGGGCATCTTTTGATGC TTTTGGCCAGCAACAACAAACACCACAATCAGGCAGCACTGTAAATCCGCTTGAGTCTGT GCTTGCACAACTATCATTCTCTGAAACACCCTCTGCCTCCAGTACATCAGCCTTTTCAAC TTCTGTTGATCAGCAAGCAAATGGAGGACAGTCATCCATGATAGATCCATCACATTCTTC ATTATTTGGTCCACCCGTTGGAATCTCAGGCAATCAGGCCTCAACAGGAATGCCCGTCCA AGGATCTGCAGTTCATCAATCTGCTGTGGCTGCCCCTATGGGTGGTCTTCCATCTCTATT GCCTTCAAATTCTCAAGGAACAAGTGGTATTCAAGAAGCAACGTCTTCTCATGACAGCAA ATCCAGTGGGCGGACAGCACTTCCAGTGGATTTCTTTACTTCACTTTATCCATCAGCAAC TCCAGCAATGCCTGGCTGGCAGAGAGCTCCCCAGTCTGGAATGGGATTTGGCATGCAGTA TCCTGCCGGAATGTTGCAGGGAATGCAGTCATATCCTCAGGCAGCATTTTCTCAACCTAC ATATCAACAGCCTACATATCAGCAACCTATGTATCAGCAACCTACATACCAACAACCTAC GTATCAACAGCCTGTATATCAGCAAAATGCATATCCCCAACCTGCGAAAGCTTCAAACCC TTTTGACCTCGGAAATGAGGCAGCTCCAATTCAAGCTCACATGTCCCTATCTGGACCACT GGGAGCATCAGCAGGCGCTGCTAACCCAACATTAGTTGGTAACTCTAGTTTTGGAGTTCC ACCTCAGCAGCCTCAGCAGATGTATCAGCCACCTGTACATCAAAACCATTACATGATGCA GCATGTTTCAAACAACATGCCTGAGCAGCTACCTAATGGCATGCTTCCAAGGCAACAAGG AGGGGCTGGTTCCCTCGGCGTCGGATATGATCAACAAGCTGCCCCTAGGTACTCCCAGCC AAGCACCCCACCTTCATATGGTGCTGTCGGTGGAAATCCTTTTGGGTAAAAAAGGCTTAT CAAATGTGGACGTACCATGTTACCTGTTTATGGTATCTTATGTATCTTCAGACCACTGGT GTGTAGTGCCCACTGCCCAGTGAGACCAGAATGCACAAAGCCCTGGAGAAAAATTTGTTT CATATTTACTGGTCATGTGTTCTGTCACTGTAGCTCCGTGTAACTTGGTCTGGGAGGTGG AAGCGACGTGGTGCATAAGCTTCAGGAGCAGTAGTTCGGTGCTTCTAGCCCCTATTTTCT TGTATATTTGTGTTTGGTGTTCTGTATGCGTTGCCTCCGATGTATATTCACAGAGACCCT ATGCCTTGTATGGTTTTTGATTGGGATCTTTCGAGCGGCCCTATCTGATAGTGTACTTAG CTCAGAATGTTACTTTTAGTCATGCTGGGTATTCAATTTTAATGTTTATTGCAATGTCGG ACTGAAGGTTGTATAACTGTGGTTAATCAGTTGTTTTGGTCTCACGCTATTGCATTACGG ATCATTTGGTGGTACGTGTTACCATCTGTTTTTCCTTTCTTCCTGGCATGGTTGTTTTTC TTACTATTCTTAGATTAGAGGAACATTGAGCGACTTATGTGACCTTGCCCGTGACGGGTG GGCTCCCGATGGTGCTGCTTCGTTCTACCGTGCAGCTCGGTGGCGGTGGCCATGTTGTCC ACGCTCGCTTCGGTAACC
Protein Sequence (714 aa)
>BART1_0-u44239.003 714 150831_barley_pseudomolecules MASRVKEDEKNERVIRGLLKLPANKRCINCNNLGPQYVCTNFWTFVCTNCSGAHREFTHR VKSVSMAKFTAQEVTALQGGGNERAREIFFKEWDSQRNPYPDSSNTDKLRNFIKYVYVER RYTGERSSDRPPRGKDDKDEHSENRRSDGNRGGSRSPPYNESYSDRRSYSGRSDDRNSRH SYGERSPGYDQNDYKKSPRHFEVVDDRSGKTTPVQRFEDRRFSEPRKPETGSPNYQREAN GSSPPVVRPVREILGDDAPQLRIGEPPKPNVARPIDPPKPNGARTIEPPPQAQRTATASS IGSSEGISEQTKAVTPVSLIDFGADPEPTASALPSQTAPTPQQQSVNAQPINTTAPQHVL EQGRSAPSVSGGDWASFDAFGQQQQTPQSGSTVNPLESVLAQLSFSETPSASSTSAFSTS VDQQANGGQSSMIDPSHSSLFGPPVGISGNQASTGMPVQGSAVHQSAVAAPMGGLPSLLP SNSQGTSGIQEATSSHDSKSSGRTALPVDFFTSLYPSATPAMPGWQRAPQSGMGFGMQYP AGMLQGMQSYPQAAFSQPTYQQPTYQQPMYQQPTYQQPTYQQPVYQQNAYPQPAKASNPF DLGNEAAPIQAHMSLSGPLGASAGAANPTLVGNSSFGVPPQQPQQMYQPPVHQNHYMMQH VSNNMPEQLPNGMLPRQQGGAGSLGVGYDQQAAPRYSQPSTPPSYGAVGGNPFG