- Transcript BART1_0-u43238.007
- Transcript IDBART1_0-u43238.007
- Gene IDBART1_0-u43238
Barley RTD
Exon Structure of BART1_0-u43238.007
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr6H | 1 | 64215270 | 64214466 | - |
| chr6H | 2 | 64216573 | 64215404 | - |
| chr6H | 3 | 64217552 | 64217463 | - |
| chr6H | 4 | 64219227 | 64219027 | - |
| chr6H | 5 | 64219737 | 64219411 | - |
| chr6H | 6 | 64219961 | 64219846 | - |
| chr6H | 7 | 64220925 | 64220808 | - |
| chr6H | 8 | 64221191 | 64221008 | - |
| chr6H | 9 | 64222305 | 64221836 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 1.65955 | 3.95691 | 2.84181 |
| morex | ETI | 1.3812 | 1.3954 | 1.31307 |
| morex | LEA | 2.70696 | 3.11372 | 1.98543 |
| morex | EPI | 1.43032 | 2.78524 | 1.63876 |
| morex | ROO | 0.322301 | 2.35352 | 0.36149 |
| morex | ROO2 | 0.782926 | 1.16992 | 1.12407 |
| morex | NOD | 1.6496 | 1.41584 | 1.65979 |
| morex | RAC | 3.62956 | 2.1623 | 2.84053 |
| morex | INF1 | 4.8009 | 4.51579 | 3.76777 |
| morex | INF2 | 4.08564 | 5.08094 | 7.49497 |
| morex | CAR5 | 9.38383 | 7.98986 | 9.43076 |
| morex | CAR15 | 0.835108 | 1.10791 | 2.49941 |
| morex | LEM | 1.53857 | 2.64902 | 2.26608 |
| morex | LOD | 2.93364 | 2.10772 | 1.75945 |
| morex | PAL | 1.87915 | 1.89009 | 2.95727 |
| morex | SEN | 2.58816 | 3.05649 | 2.07061 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os02g05450.1 | +1 | 0.0 | 608 | 348/518 (67%) | protein|Homeobox domain containing protein, expressed |
| TAIR PP10 | AT4G29940 @ ARAPORT AT4G29940.2 @ TAIR |
+1 | 5e-44 | 172 | 89/186 (48%) | Symbols: PRHA | pathogenesis related homeodomain protein A | chr4:14648346-14652710 REVERSE LENGTH=769 |
| BRACH PP3 | Bradi3g03747.3.p | +1 | 0.0 | 723 | 400/515 (78%) | pacid=32817691 transcript=Bradi3g03747.3 locus=Bradi3g03747 ID=Bradi3g03747.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3481 bp)
>BART1_0-u43238.007 3481 150831_barley_pseudomolecules AAAGGACTCAGTCGGATGTGATACTATCAAGTTCTGACAATGAATAATTCAGACAAGAAG TCGGTATGCTCCATTCCTAGAAGATCATCAGAACGTAGGAAACCGTCCTCTTCTGAGTTG GTTTCTTCAGCAAAAAGGCCAACTCGCCACAACACCTCCAGCAGTTATAAGCCAGATCAT TGTTCTCCTCCCAAGAGAACAGTAAGAACAGTCAGGAATGTTAATCTGGCAAAATATGTA AAGAACAAGTATTATCGTAGTCCTCTGAGCAAGCGGCAGGCTTCAAATGTTGCTACTGGA AAAACTGCAACAGGACCAGTCAGGAGGAGGAACCGGAAACGGAGAAGGCACAACACTGAT TGTGACGAGGCAAGTCGCATGGAAAGAAGGGCGAGCTATTTGCTGGTCAAAATAAAAACG GAGCAGAATTTAATAGATGCATACTCTGGAGATGGCTGGAATGGGCACAGGTGTGCTTTT CCAAACAGCCGAGAGAAATTAAAGCCAGATAAGGAGCTACAGCGTGCTAAGAAACAGATC ATTAAATGCAAAATTGCTATCCGTGATATTATCCATCAACTTGATTTGTATAGTTCAAGT GGGAGCATGGAAGATTCCGTGATGCCTCCAGATGAGTCTGTTAACCCTGATAATACCATA TGTTCAAGATGCAAATCTCCTGAATCAGTTCCCAACAATAAATTTATCTTCTGTGAAGGG CCCTGCAAAATGGCGTACCATCAGAAATGTTCAGAACCTCCTCTAGACAAAAGTCTTCCT ACTGGTGGTCCTGGATGGCTTTGTAAATTCTGTTTGTGCAAGATGAAAATTTTAGAAGCT GTTAATGCACATTTGGGAATGAGCCTTACAGTGATGTGTCCCTCTAAAGATATTTTTAAG GAAGCAACTGAACAGATGGACTCTGAGGATGGACTAGGAGAGGATTGGTTATCTGAGTAT TCAGGTGATGAGGACTATGACCCTGAAGAAAATGACTTCACAAGCAGCAGCCTGGATAGT GGTGAAGAAAGGATATCTGATCAGTCCAATTGTTCAGGAAGTCCGCTTTATTCTCCAAAC GATGATATTCCAGGCTTTATATCAGCAGATTTCACTGATGCGGAAGGATTCTACCACACC AATTCAAATTTAGGAATTGATTCTGGGGATGATGATGCTGCCGAGATGCTTACCTACCAA AGGCCAAAGAAAGAGGAAATGTTTGGAAAGCTGACTGACAATGAAAAGCAGAGTGAAGAT GAAGATTGGGGTACTAGTAATAAGAGAAAGAAAAGAAGAGTGGATTCAGCTGGTGTTGGA GTTAAGTCTGCCGAGGGTTTCTCAGATGTAAAATCAAATGAGAAAGTCCAACCGCAGAGG AGAAAACTTTTCAGAATTCCTCCTGAGGCAGTTCAGGTACTACGCAAATCTTTTGCTGAA AGCGAGCTTCCAACCCGGGAGGTGAAAGAGAATCTCTCAACAGAATTGGGTATTTCATTT GAAAAGATTGACAAGTGGTTCAAAAATACAAGGTGTGCTGCTCTCAGAGATCGGAAGGCA TGCATTTCTAACTCATAATTATTCATACTCGGTATTTTCGTTGAGTCTTTAGCATGTGCT GCATTCTCACATGGTCTCCCGTGTTCGATACAATTCTGGATATTGCTTACTTTTCTTATT TCTGTTTGCTATATTGCAAACATTCCAGATGTCACCTAAATGGAAGGTACTAAACAGAGA TATATATTTTTTCCAATTTTTGACCCTGAATAATCACAAAAGTTCAGGGTTGGGAAGGTT CCTGTTCTCAACCTTGGACCGTAGAACTTTTTGAAATGCAACCAAACAGTCCACACTTCT CTCTCAAGTAATTTTGATTTTGGACTGACGACCTCAATGCCATGTTGTTGCCATGCCATC AGATACCATTCTTTTTCTTTGTTTCAGACAATTTTTTCTGTGCAAATTTTCTATTGGGAT GATATAGTTTTTTTAGATTGTTTTTTGGGTGTTTTTTATTGTTCATGGCAGCAACACGAC AGTGTCATCCATGTCATCCACAACTCCTTGTGAAACCAGCCGAAGTCGAAAAGTGGACTA TTTCAATAGTTTGAGGTTACAATTCAAACAGTTTTAGAGTTAAAGGTGGAAATGTAAACT TTCAAGGGTGTTAGGGTTAAAAAGTCAACTTTTTGAAGGTCTCATTCCATACTTGAATCT TTGGTTTTTAAAACTGCACAAATGACAAATTATAACTTTGGATGGATTTACCTACAGAAG TACATATGGGACTGAACTACCTTTCAAGTACTGCGCTCCTTCGTCACAGCATATGTTTTG ATTCCATTCCAGTTTCAGTGTTTTTTCTTTAGGTATATCTTGTGGTCAAATATTTTCAAC ACACAGTTTGCATAACACTAGTGCTGTCTGCAGGCTGAAGGAAATAGCCGTGTTGCTGGC CCCAGCAAAAGATCGAGACGGAGTGCAGGGAAATCTGGAAGTTCAGGCAAGGTTGATTCA GTGGACAATTCATATCTTCTTCCCGCGTCTGAAATCATCAGTGTACCTACACATCCACAA GGGATTCCTGAGAGGAAGCCCGAATCAACCAGTAGAACTGTGAGGGGGCGGGTACACGAT AAAGGAGCTCCCTTGTGCCTGACCGCCAAAGTCAAGGAGAGTACATCACCTACAACCAAG CCTGTCTTGAACACACACCCTACTCATCTAGCAGATCGCATCATCAACACTGAGCATAGA GCTGTCTCTCAGGAGGACACAGGGCCCTCCGATGACCCTTTCTTCGATGCGATCCTATCC TATCCCACCATCAACACAAGCGACAGAGCTGCCTCTCGGGATGATCCGGTGGCCTTCGAG GACGACCCTTTCCTGGACGTGATGCTAGCAAACCGCGACATCTATACCGAGGAGAGAGTC GCTTCTCACGAGGACGTGAGGCGGACTTCCAGCGACCAGCCTTTCCTGGATGTGATCCAG AACGTGTGCGGACTCGAGCATAGGCTGCAGAGACTGAAGGGGGACATGCTATCATCATCA GCAGCACCAGGCGGCGCTGGAACCACAGAGCGCGACCTGCAGAGCCAACTAGTGGTTCTC GTGCCAACCGCCGAGCTGAAGGACAAATCACAGCCTGGCATCTGAAATTCCGGGTGCGGA TGCGACGCTCCGTTTGCGTGTTGTCGATAGGAGTTACTAAAACATATAGAAGAAATAGTG TAGAGAAGGAGAAGAGAAAGAAAAGTAGTGGCTCTAGTCTAGGGTTCTAGCCGACAAGGG GCCTCAACCGTGGTCGTTACTGTGTGTCACATTGAAGTGCGTCTTCGTTGTTACTTAGTA TACAAGGGCAGTTGTTACTGGTTTTAATGGGTTGGAGTTATATACTTTTCGGGGTTCAAA ATGTTTGGTTTGGAACCATGTCGATGTGCAAACTTTGAGTAACCTCAATTCTCATTTTTT T
Protein Sequence (512 aa)
>BART1_0-u43238.007 512 150831_barley_pseudomolecules MNNSDKKSVCSIPRRSSERRKPSSSELVSSAKRPTRHNTSSSYKPDHCSPPKRTVRTVRN VNLAKYVKNKYYRSPLSKRQASNVATGKTATGPVRRRNRKRRRHNTDCDEASRMERRASY LLVKIKTEQNLIDAYSGDGWNGHRCAFPNSREKLKPDKELQRAKKQIIKCKIAIRDIIHQ LDLYSSSGSMEDSVMPPDESVNPDNTICSRCKSPESVPNNKFIFCEGPCKMAYHQKCSEP PLDKSLPTGGPGWLCKFCLCKMKILEAVNAHLGMSLTVMCPSKDIFKEATEQMDSEDGLG EDWLSEYSGDEDYDPEENDFTSSSLDSGEERISDQSNCSGSPLYSPNDDIPGFISADFTD AEGFYHTNSNLGIDSGDDDAAEMLTYQRPKKEEMFGKLTDNEKQSEDEDWGTSNKRKKRR VDSAGVGVKSAEGFSDVKSNEKVQPQRRKLFRIPPEAVQVLRKSFAESELPTREVKENLS TELGISFEKIDKWFKNTRCAALRDRKACISNS